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Anopheles gambiae
cluster # 7594 cluster # 7594       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7594#0 length = 960 sequences # 6  
consensus_7594#1 length = 685 sequences # 1  

consensusID : consensus_7594#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 960
fasta sequence
                              [CCGCCCGCTTCGAGTAAAAATCGATCGACCGCACTGTGGCGTAGTTAGTTTAAATTTTTATCGATTAGCTTTACTTTCTTGAGCAATGTACACCAAAGCAAGCGTATATTCTGCATTAGTGCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAGCTGCTAACCACTCCAGCGCAGTTTCGTTGTGTGTGCTTGCTTGCAATCACAGCAATCGGAGCATCGCAAACTGTACCGCCCGGAAGAACTGCTTGAAGGAGGAGCAGGAAGCAACATGGAGTACTCCAGTTTCGTTCGCGAGCTGCGCAGGGAATCCCAC-AGCCCGTACGTCAA-TTCCTCCGACT-CGCAGTACGCCAGGGAGTTCGAGGAG-CAGATGCAAGCGCTGGTTATTAA-CTACGACA-TTGAGGAACCGTGCGCC-GAGGAGCAACATTCA--GCGCGCTAC-TCTTTCACGAGCACGCCCCAGCCTTCCGGAAGTGGACTGAGGCTGGCGCGTACGAAGCCAACCACCACTGTATCGGCTGACGAAGCGGCACGAGGGGCAGAAGAAGAGGTGCCGAAGAAGAAAATAGCTATGAATTTTGACCAGTGCGGTCCCGAATCGTCCCAGGGTTCGTTCGAGTCGAGCGAAGGTATTTCGATGCGGTACGATTCCTGCAACTCGATCGACGACATACCGCATCTGGTTTCGTGTGATGAATTTGCCTGTGATGCGCCCACGATTCGCGGAGAGAAACGGAAGCTCGGCAGTCCCGTTCCGTTCGATGCACTGCAGGGAGAGGAAGATTCGATGCTGGAACCGGCCAAATATGATCTGTACCCGAGCGTATCGACGCCTGCTACGACCAAACTGCTTACTGTTCCTGCGAAACGAACGTATGACGAGGCTAATAGGTAGAAGTTAGGTTATGAAGTTTAAGCTTTATCTTAATAGCGTAGAATTTGCTGTGCACGTGAACTCCAGCTC]

[+] EMBL BM580642             [CCGCCCGCTTCGAGTAAAAATCGATCGACCGCACTGTGGCGTAGTTAGTTTAAGTTTTTATCGATAAGCTTTACTTTCTTGAGCAATGTACACCAAAGCAAGCGTATATTCTGCATTAGTGCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAGCTGCTAACCACTCCAGCGCAGTTTCGTTGTGTGTGCTTGCTTGCAATCACAGCAATCGGAGCATCGCAAACTGTACCGCCCGGAAGAACTGCTTGAAAGTGGAGTAGGAAGCAACATGGAGTACTCCAGTTTCGTTCGCGAGCTGCGCAGGGAATCCCAC AGCCCGTACGTCAA TTCCTCCGACT CGCAGTACGCCAGGGAGTTCGAGGAG CAGATGCAAGCGCTGGTTATTAA CTACGACA TTGAGGAACCGTGCGCT GAGGAGCAACATTCA  GCGCGCTAC TCTTTCACGAGTACGCCCCAGCCTTCCGGAAGTGAGCTGAGGCTGGCGCGTACGAAGCCAACCACCACTGTATCGGCTGACGAAGCGGCACGAGGGGCAGAAGAAGAGGTGCCGAAGAAGAAAATAGCTATGAATTTTGACCAGTGCGGTCCCGAATCGTCCCAGGGTTCGTTCGAGTCGAGCGAAG                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX621350             [               AAAAATCGATCGACCGCACTGTGGCGTAGTTAGTTTAAATTTTTATCGATTAGCTTTACTTTCTTGAGCAATGTACACCAAAGCAAGCGTATATTCTGCATTAGTGCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAGCTGCTAACCACTCCAGCGCAGTTTCGTTGTGTGTGCTTGCTTGCAATCACAGCAATCGGAGCATCGCAAACTGTACCGCCCGGAAGAACTGCTTGAAGGAGGAGCAGGAAGCAACATGGAGTACTCCAGTTTCGTTCGCGAGCTGCGCAGGGAATCCCAC AGCCCGTACGTCAA TTCCTCCGACT CGCAGTACGCCAGGGAGTTCGAGGAG CAGATGCAAGCGCTGGTTATTAA CTACGACA TTGAGGAACCGTGCGCC GAGGAGCAACATTCA  GCGCGCTAC TCTTTCACGAGCACGCCCCAGCCTTCCGGAAGTGGACTGAGGCTGGCGCGTACGAAGCCAACCACCACTGTATCGGCTGACGAAGCGGCACGAGGGGCAGAAGAAGAGGTGCCGAAGAAGAAAATAGCTATGAATTTTGACCAGTGCGGTCCCGAATCGTCCCAGGGTTCGTTCGAGTCGAGCGAAGGTATTTCGATGCGGTACGATTCCTGCAACTCGATCGACGACATACCGCATCTGGTTTCGTGTGATGAATTTGCCTGTGATGCGCCCACGATTCGCGGAGAGAAACGGAAGCTCGGCAGTCCCGTTCCGTTCG                                                                                                                                                                                                           ]
[+] EMBL AL695998             [                                              gcccnggaaTTTTATCGATTAGCTTTACTTTCTTGAGCAATGTACACCAAAGCAAGCGTATATTCTGCATTAGTGCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAGCTGCTAACCACTCCAGCGCAGTTTCGTTGTGTGTGCTTGCTTGCAATCACAGCAATCGGAGCATCGCAAACTGTACCGCCCGGAAGAACTGCTTGAAGGAGGAGCAGGAAGCAACATGGAGTACTCCAGTTTCGTTCGCGAGCTGCGCAGGGAATCCCACTAGCCCGTACGTCAAGTTCCTCCGACTCCGCAGTACGCCAGGGAGTTCGNCGAGCCAGATGCAAGCGCTGGTTATTAAGCTACGANACTTGAGGAACCGTGCGCCTGAGGAGCAACATTCACGGGGCGCTACATCTTTCACGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CNS09MIY             [                                                                                            CCAAAGCAAGCGTATATTCTGCATTAGTGCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAG TGCTAACCACTCCAGCGCAGTTTCGTTGTGTGTGCTTGCTTGCAATCACAGCAATCGGAGCATCGCAAACTGTACCGCCCGGAAGAACTGCTTGAAGGAGGAGCAGGAAGCAACATGGAGTACTCCAGTTTCGTTCGCGAGCTGCGCAGGGAATCCCAC AGCCCGTACGTCAA TTCCTCCGACT CGCAGTACGCCAGGGAGTTCGAGGAG CAGATGCAAGCGCTGGTTATTAA CTACGACA TTGAGGAACCGTGCGCC GAGGAGCAACATTCA  GCGCGCTAC TCTTTCACGAGCACGCCCCAGCCTTCCGGAAGTGGACTGAGGCTGGCGCGTACGAAGCCAACCACCACTGTATCGGCTGACGAAGCGGCACGAGGGGCAGAAGAAGAGGTGCCGAAGAAGAAAATAGCTATGAATTTTGACCAGTGCGGTCCCGAATCGTCCCAGGGTTCGTTCGAGTCGAGCGAAGGTATTTCGATGCGGTACGATTCCTGCAACTCGATCGACGACATACCGCATCTGGTTTCGTGTGATGAATTTGCCTGTGATGCGCCCACGATTCGCGGAGAGAAACGGAAGCTCGGCAGTCCCGTTCCGTTCGATGCACTGCAGGGAGAGGAAGATTCGATGCTGGAACCGGCCAAATATGATCTGTACCCGAGCGTATCGACGCCTGCTACGACCAAACTGCTTACTGTTCCTGCGAAACGAACGTATGACGAGGCTAATAGGTAGAAGTTAGGTTATGAAGTTTAAGCTTTATCTTAATAGCGTAGAATTTGCTGTGCACGTGAACTCCAGCTC]
[+] EMBL BX613952             [                                                                                                                                                                                                                                                                                                                                                                                                                                      AGGAGCAACATTCA  CCGCGCTAC TCTTTCACGAGCACGCCCCAGCCTTCCGGAAGTGGACTGGGGCTGGCGCGTACGAAGCCAACCACCACTGTATCGGCTGACGAAGCGGTACGAGGGGCAGAAGAAGAGGTGCCGAAGAAGAAAATAGCTATGAATTTTGACCAGTGCGGTCCCGAATCGTCCCAGGGTTCGTTCGAGTCGAGCGAAGGTATTTCGATGCGGTACGATTCCTGCAACTCGATCGACGACATACCGCATCTGGTTTCGTGTGATGAATTTG                                                                                                                                                                                                                                                                       ]
[+] EMBL BX613953             [                                                                                                                                                                                                                                                                                                                                                                                                                                             ACATTCA  CCGCGCTAC TCTTTCACGAGCACGCCCCAGCCTTCCGGAAGTGGACTGGGGCTGGCGCGTACGAAGCCAACCACCACTGTATCGGCTGACGAAGCGGTACGAGGGGCAGAAGAAGAGGTGCCGAAGAAGAAAATAGCTATGAATTTTGACCAGTGCGGTCCCGAATCGTCCCAGGGTTCGTTCGAGTCGAGCGAAGGTATTTCGATGCGGTACGATTCCTGCAACTCGATCGACGACATACCGCATCTGGTTTCGTGTGATGAATTTGCCTGTGATGCGCCCACGATTCGCGGAGAGAAACGGAAGCTCGGCAGTCCCGTTCCGTTCGATGCACTGCAGGGAGAGGAATATTCGATGCTGGAACCGGCCAAATATGATCTGTACCCGAGCGTATCGACGCCTGCTACGACCAAACTGCTTACTGTTCCTGCGAAACGAACGTATGACGAGGCTAATAGGTAGAAGTTAGGTT                                                           ]


>consensus_7594#0 CCGCCCGCTTCGAGTAAAAATCGATCGACCGCACTGTGGCGTAGTTAGTTTAAATTTTTA TCGATTAGCTTTACTTTCTTGAGCAATGTACACCAAAGCAAGCGTATATTCTGCATTAGT GCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAGCTGCTAACCACTCCAGCGCAGTTTC GTTGTGTGTGCTTGCTTGCAATCACAGCAATCGGAGCATCGCAAACTGTACCGCCCGGAA GAACTGCTTGAAGGAGGAGCAGGAAGCAACATGGAGTACTCCAGTTTCGTTCGCGAGCTG CGCAGGGAATCCCACAGCCCGTACGTCAATTCCTCCGACTCGCAGTACGCCAGGGAGTTC GAGGAGCAGATGCAAGCGCTGGTTATTAACTACGACATTGAGGAACCGTGCGCCGAGGAG CAACATTCAGCGCGCTACTCTTTCACGAGCACGCCCCAGCCTTCCGGAAGTGGACTGAGG CTGGCGCGTACGAAGCCAACCACCACTGTATCGGCTGACGAAGCGGCACGAGGGGCAGAA GAAGAGGTGCCGAAGAAGAAAATAGCTATGAATTTTGACCAGTGCGGTCCCGAATCGTCC CAGGGTTCGTTCGAGTCGAGCGAAGGTATTTCGATGCGGTACGATTCCTGCAACTCGATC GACGACATACCGCATCTGGTTTCGTGTGATGAATTTGCCTGTGATGCGCCCACGATTCGC GGAGAGAAACGGAAGCTCGGCAGTCCCGTTCCGTTCGATGCACTGCAGGGAGAGGAAGAT TCGATGCTGGAACCGGCCAAATATGATCTGTACCCGAGCGTATCGACGCCTGCTACGACC AAACTGCTTACTGTTCCTGCGAAACGAACGTATGACGAGGCTAATAGGTAGAAGTTAGGT TATGAAGTTTAAGCTTTATCTTAATAGCGTAGAATTTGCTGTGCACGTGAACTCCAGCTC



consensusID : consensus_7594#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence
                              [AATNGCCCGAGGTTAACAAATATCCCGCTTCGAGGTAAAATCGATCGACCGCACTGTGGCGTAGTTAGTTTAAGTTATTATCGATTAGCTTTACTTTCTTGAGCAATGTACACCAAAGCAAGTGTATATTCTGCATTAGTGCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAGCTGCTAACCACTCCAGCACAGTTTCGTTGTGTGTGCTATGCTTGCAATCACAGCAATCGGAGCATCTGCAAACTGTACCTGCCCGGAAGAACTGCTTGAAAGTGGAGTAGGAAGCAACATGGAGTACTCCAGTTTCGTTCGCGAGCTGCGCAGGGAATCCCAGAGCCCGTACGTCAATTCCTCCGACTCGCAGTACGCCAGGGAGTTCGAGGAGCAGATGCAAGCGCTGGTTATTAACTACGACATTGAGGAACCGTGCGCTGAGTGAGCAACATTCAGCGCGCTACTCTTTCACGAGCACGCCCCAGNCTTCCGGAAGTGGGCTGAGGCTGGCGCGTACGAAGCCAACCAACACTGTAACGGCTGACGAGTGGCGGCAACGATGTGGCAGTACNGCAAGAGGTTGCCGCACGAAGNNAACAATAGCTATGAATTTNTGAGCCAGTGCNCGGTCCCGNAATCGGTCCCAGNGGTTCCGNCTCGCAGTCNNGCGCCGAGGTATTTCCGAAT]

[+] EMBL AL930087             [AATNGCCCGAGGTTAACAAATATCCCGCTTCGAGGTAAAATCGATCGACCGCACTGTGGCGTAGTTAGTTTAAGTTATTATCGATTAGCTTTACTTTCTTGAGCAATGTACACCAAAGCAAGTGTATATTCTGCATTAGTGCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAGCTGCTAACCACTCCAGCACAGTTTCGTTGTGTGTGCTATGCTTGCAATCACAGCAATCGGAGCATCTGCAAACTGTACCTGCCCGGAAGAACTGCTTGAAAGTGGAGTAGGAAGCAACATGGAGTACTCCAGTTTCGTTCGCGAGCTGCGCAGGGAATCCCAGAGCCCGTACGTCAATTCCTCCGACTCGCAGTACGCCAGGGAGTTCGAGGAGCAGATGCAAGCGCTGGTTATTAACTACGACATTGAGGAACCGTGCGCTGAGTGAGCAACATTCAGCGCGCTACTCTTTCACGAGCACGCCCCAGNCTTCCGGAAGTGGGCTGAGGCTGGCGCGTACGAAGCCAACCAACACTGTAACGGCTGACGAGTGGCGGCAACGATGTGGCAGTACNGCAAGAGGTTGCCGCACGAAGNNAACAATAGCTATGAATTTNTGAGCCAGTGCNCGGTCCCGNAATCGGTCCCAGNGGTTCCGNCTCGCAGTCNNGCGCCGAGGTATTTCCGAAT]


>consensus_7594#1 AATNGCCCGAGGTTAACAAATATCCCGCTTCGAGGTAAAATCGATCGACCGCACTGTGGC GTAGTTAGTTTAAGTTATTATCGATTAGCTTTACTTTCTTGAGCAATGTACACCAAAGCA AGTGTATATTCTGCATTAGTGCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAGCTGCT AACCACTCCAGCACAGTTTCGTTGTGTGTGCTATGCTTGCAATCACAGCAATCGGAGCAT CTGCAAACTGTACCTGCCCGGAAGAACTGCTTGAAAGTGGAGTAGGAAGCAACATGGAGT ACTCCAGTTTCGTTCGCGAGCTGCGCAGGGAATCCCAGAGCCCGTACGTCAATTCCTCCG ACTCGCAGTACGCCAGGGAGTTCGAGGAGCAGATGCAAGCGCTGGTTATTAACTACGACA TTGAGGAACCGTGCGCTGAGTGAGCAACATTCAGCGCGCTACTCTTTCACGAGCACGCCC CAGNCTTCCGGAAGTGGGCTGAGGCTGGCGCGTACGAAGCCAACCAACACTGTAACGGCT GACGAGTGGCGGCAACGATGTGGCAGTACNGCAAGAGGTTGCCGCACGAAGNNAACAATA GCTATGAATTTNTGAGCCAGTGCNCGGTCCCGNAATCGGTCCCAGNGGTTCCGNCTCGCA GTCNNGCGCCGAGGTATTTCCGAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7594#0      --------------------CCGCCCGCTTCGAGTAAAAATCGATCGACCGCACTGTGGC 40
consensus_7594#1      AATNGCCCGAGGTTAACAAATATCCCGCTTCGAGGTAAAATCGATCGACCGCACTGTGGC 60
                                             ***********  ************************

consensus_7594#0      GTAGTTAGTTTAAATTTTTATCGATTAGCTTTACTTTCTTGAGCAATGTACACCAAAGCA 100
consensus_7594#1      GTAGTTAGTTTAAGTTATTATCGATTAGCTTTACTTTCTTGAGCAATGTACACCAAAGCA 120
                      ************* ** *******************************************

consensus_7594#0      AGCGTATATTCTGCATTAGTGCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAGCTGCT 160
consensus_7594#1      AGTGTATATTCTGCATTAGTGCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAGCTGCT 180
                      ** *********************************************************

consensus_7594#0      AACCACTCCAGCGCAGTTTCGTTGTGTGTGCT-TGCTTGCAATCACAGCAATCGGAGCAT 219
consensus_7594#1      AACCACTCCAGCACAGTTTCGTTGTGTGTGCTATGCTTGCAATCACAGCAATCGGAGCAT 240
                      ************ ******************* ***************************

consensus_7594#0      C-GCAAACTGTACC-GCCCGGAAGAACTGCTTGAAGGAGGAGCAGGAAGCAACATGGAGT 277
consensus_7594#1      CTGCAAACTGTACCTGCCCGGAAGAACTGCTTGAAAGTGGAGTAGGAAGCAACATGGAGT 300
                      * ************ ******************** * **** *****************

consensus_7594#0      ACTCCAGTTTCGTTCGCGAGCTGCGCAGGGAATCCCACAGCCCGTACGTCAATTCCTCCG 337
consensus_7594#1      ACTCCAGTTTCGTTCGCGAGCTGCGCAGGGAATCCCAGAGCCCGTACGTCAATTCCTCCG 360
                      ************************************* **********************

consensus_7594#0      ACTCGCAGTACGCCAGGGAGTTCGAGGAGCAGATGCAAGCGCTGGTTATTAACTACGACA 397
consensus_7594#1      ACTCGCAGTACGCCAGGGAGTTCGAGGAGCAGATGCAAGCGCTGGTTATTAACTACGACA 420
                      ************************************************************

consensus_7594#0      TTGAGGAACCGTGCGCCGAG-GAGCAACATTCAGCGCGCTACTCTTTCACGAGCACGCCC 456
consensus_7594#1      TTGAGGAACCGTGCGCTGAGTGAGCAACATTCAGCGCGCTACTCTTTCACGAGCACGCCC 480
                      **************** *** ***************************************

consensus_7594#0      CAGCCTTCCGGAAGTGGACTGAGGCTGGCGCGTACGAAGCCAACCACCACTGTATCGGCT 516
consensus_7594#1      CAGNCTTCCGGAAGTGGGCTGAGGCTGGCGCGTACGAAGCCAACCAACACTGTAACGGCT 540
                      *** ************* **************************** ******* *****

consensus_7594#0      GACGAA--GCGGCA-CGAGG-GGCAG---AAGAAGAGGT-GCCG----AAGAAGAAAATA 564
consensus_7594#1      GACGAGTGGCGGCAACGATGTGGCAGTACNGCAAGAGGTTGCCGCACGAAGNNAACAATA 600
                      *****   ****** *** * *****      ******* ****    ***   * ****

consensus_7594#0      GCTATGAATTTT--GACCAGTGCG--GTCCCGAATC--GTCCCAGGGTTC---GTTCG-A 614
consensus_7594#1      GCTATGAATTTNTGAGCCAGTGCNCGGTCCCGNAATCGGTCCCAGNGGTTCCGNCTCGCA 660
                      ***********     *******   ****** *    ******* * *      *** *

consensus_7594#0      GTCGAGCG--AAGGTATTTCGATGCGGTACGATTCCTGCAACTCGATCGACGACATACCG 672
consensus_7594#1      GTCNNGCGCCGAGGTATTTCCGAAT----------------------------------- 685
                      ***  ***   *********                                        

consensus_7594#0      CATCTGGTTTCGTGTGATGAATTTGCCTGTGATGCGCCCACGATTCGCGGAGAGAAACGG 732
consensus_7594#1      ------------------------------------------------------------
                                                                                  

consensus_7594#0      AAGCTCGGCAGTCCCGTTCCGTTCGATGCACTGCAGGGAGAGGAAGATTCGATGCTGGAA 792
consensus_7594#1      ------------------------------------------------------------
                                                                                  

consensus_7594#0      CCGGCCAAATATGATCTGTACCCGAGCGTATCGACGCCTGCTACGACCAAACTGCTTACT 852
consensus_7594#1      ------------------------------------------------------------
                                                                                  

consensus_7594#0      GTTCCTGCGAAACGAACGTATGACGAGGCTAATAGGTAGAAGTTAGGTTATGAAGTTTAA 912
consensus_7594#1      ------------------------------------------------------------
                                                                                  

consensus_7594#0      GCTTTATCTTAATAGCGTAGAATTTGCTGTGCACGTGAACTCCAGCTC 960
consensus_7594#1      ------------------------------------------------
                                                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)