These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 701 fasta sequence [AAGGATCTGATTCTGCTCTAAAACAACCTGCGACTATATTCGATTTGGTTTCACAGTTTGCCGTTCTTGCCGCGTTCGTCGCTACCGCCAGTGCCGTCGCCATTGGATATCCGGCTCCCTACGGGGCATACCCGGCGGTGGCCAAGGTTGCTGCTCCGTTGGCCGACTACGACCCCAACCCGCAGTACAGCTACAGTTACGCGGTATCGGTAAGTATGCACGTCCAGCAACACCAGCGATCCATCATGGAATCACTGTTTACATTTTCCACCTGTCCCTCCGAAATTGCTAGGATGCTCTGACCGGTGATAACAAGAGCCAGCAGGAATCCCGCTCGGGAGATGTCGTCAGCGGATCGTACTCGCTCATCGAGCCCGATGGCACCCAGCGTGTCGTTGAGTACACTGCCGACCCGGTCAACGGATTCAACGCCGTCGTCCACCGTGGAGCTGGTGTGGTAAAGGCTGTGGCCCCAGTAGCCAAGTTCGCTGCTCCGCTGGCCTACCCCGCCGTCGCCAAGGTTGCGGCTCCGCTGTACGGTTAAATCATGCCTCACGGATATCCCCCACCCTGTCTAGATATTTATTAGTCGTCCCATGTTTACCCCAAAATACTCCCATCCCTTCACATCCTTTGCAAATGAGAGCTTCACGAAAATGTAGTTATTTTTGTTTGACTGTGTGACTGAAATAAAGTGCAAG] [+] EMBL BX622444 [AAGGATCTGATTCTGCTCTAAAACAACCTGCGACTATATTCGATTTGGTTTCACAGTTTGCCGTTCTTGCCGCGTTCGTCGCTACCGCCAGTGCCGTCGCCATTGGATATCCGGCTCCCTACGGGGCATACCCGGCGGTGGCCAAGGTTGCTGCTCCGTTGGCCGACTACGACCCCAACCCGCAGTACAGCTACAGTTACGCGGTATCGGTAAGTATGCACGTCCAGCAACACCAGCGATCCATCATGGAATCACTGTTTACATTTTCCACCTGTCCCTCCGAAATTGCTAGGATGCTCTGACCGGTGATAACAAGAGCCAGCAGGAATCCCGCTCGGGAGATGTCGTCAGCGGATCGTACTCGCTCATCGAGCCCGATGGCACCCAGCGTGTCGTTGAGTACACTGCCGACCCGGTCAACGGATTCAACGCCGTCGTCCACCGTGGAGCTGGTGTGGTAAAGGCTGTGGCCCCAGTAGCCAAGTTCGCTGCTCCGCTGGCCTACCCCGCCGTCGCCAAGGTTGCGGCTCCGCTGTACGGTTAAATCATGCCTCACGGATATCCCCCACCCTGTCTAGATATTTATTAGTCGTCCCATGTTTACCCCAAAATACTCCCATCCCTTCACATCCTTTGCAAATGAGAGCTTCACGAAAATGTAGTTATTTTTGTTTGACTGTGTGACTGAAATAAAGTGCAAG] consensusID : consensus_7607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [AATNGCCCGAGTTNCCTCCGGTTTGCGTTCTTGCCGCGTCGTCGCTACCGCCAGTGCCGTCGCCATTGGATATCCGGCTCCCTACGGGGCATACCCGGCGGTGGCCAAGGTTGCTGCTCCGTTGGCCGACTACGACCCTAACCCACAGTACAGCTACAGTTACGCAGTATCGGATGCTCTCACCGGTGACAACAAGAGCCAGCAGGAGTCCCGCTCGGGAGATGTCGTCAGCGGATCGTACTCGCTCATCGAGCCCGATGGTACCCAGCGTGTCGTTGAATACACTGCCGACCCGGTCAACGGATTCAACGCCGTCGTCCACCGTGGAGCTGGTGTGGTAAAGGCTGTGGCCCCAGTAGCCAAGTTCGCTGCTCCGCTGGCCTATCCCGCCGTCGCCAAGGTTGCGGCTCCGCTGTACGGTTAAATCATGCCTCACGGATATCCCCCACCTGTCTAGATATTTATTAGTCGTCCCATGTTTACCCCAAAATCCTCCCATCCCTTCACATCCTTTGCAAATGAAGCTTCACGAAACATGTAGTTATAGTACAGACCTGTGTGACTGAATAAAGTGCAAGATGGTTATAAAAATCATAAACAAACAAAGACAAAA] [+] EMBL AL932537 [AATNGCCCGAGTTNCCTCCGGTTTGCGTTCTTGCCGCGTCGTCGCTACCGCCAGTGCCGTCGCCATTGGATATCCGGCTCCCTACGGGGCATACCCGGCGGTGGCCAAGGTTGCTGCTCCGTTGGCCGACTACGACCCTAACCCACAGTACAGCTACAGTTACGCAGTATCGGATGCTCTCACCGGTGACAACAAGAGCCAGCAGGAGTCCCGCTCGGGAGATGTCGTCAGCGGATCGTACTCGCTCATCGAGCCCGATGGTACCCAGCGTGTCGTTGAATACACTGCCGACCCGGTCAACGGATTCAACGCCGTCGTCCACCGTGGAGCTGGTGTGGTAAAGGCTGTGGCCCCAGTAGCCAAGTTCGCTGCTCCGCTGGCCTATCCCGCCGTCGCCAAGGTTGCGGCTCCGCTGTACGGTTAAATCATGCCTCACGGATATCCCCCACCTGTCTAGATATTTATTAGTCGTCCCATGTTTACCCCAAAATCCTCCCATCCCTTCACATCCTTTGCAAATGAAGCTTCACGAAACATGTAGTTATAGTACAGACCTGTGTGACTGAATAAAGTGCAAGATGGTTATAAAAATCATAAACAAACAAAGACAAAA] consensusID : consensus_7607#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 607 fasta sequence [AGGACCCAACACAGCACAAGAGAAAATGGCCCTCCGGTTTGCCGTTCTTGCCGCGTTCGTCGCTACCGCCAGTGCCGTCGCCATTGGATATCCGGCTCCCTACGGGGCATACCCGGCGGTGGCCAAGGTTGCTGCTCCGTTGGCCGACTACGACCCTAACCCACAGTACAGCTACAGTTACGCAGTATCGGATGCTCTCACCGGTGACAACAAGAGCCAGCAGGAGTCCCGCTCGGGAGATGTCGTCAGCGGATCGTACTCGCTCATCGAGCCCGATGGTACCCAGCGTGTCGTTGAATACACTGCCGACCCGGTCAACGGATTCAACGCCGTCGTCCACCGTGGAGCTGGTGTGGTAAAGGCTGTGGCCCCAGTAGCCAAGTTCGCTGCTCCGCTGGCCTATCCCGCCGTCGCCAAGGTTGCGGCTCCGCTGTACGGTTAAATCATGCCTCACGGATATCCCCCACCCTGTCTAGATATTTATTAGTCGTCCCATGTTTACCCCAAAATCCTCCCATCCCTTCACATCCTTTGCAAATGAGAGCTTCACGAAAATGTAGTTATTTTTGTTTGACTGTGTGACTGAATAAAGTGCAAGATGGTTATA] [+] EMBL BX622702 [AGGACCCAACACAGCACAAGAGAAAATGGCCCTCCGGTTTGCCGTTCTTGCCGCGTTCGTCGCTACCGCCAGTGCCGTCGCCATTGGATATCCGGCTCCCTACGGGGCATACCCGGCGGTGGCCAAGGTTGCTGCTCCGTTGGCCGACTACGACCCTAACCCACAGTACAGCTACAGTTACGCAGTATCGGATGCTCTCACCGGTGACAACAAGAGCCAGCAGGAGTCCCGCTCGGGAGATGTCGTCAGCGGATCGTACTCGCTCATCGAGCCCGATGGTACCCAGCGTGTCGTTGAATACACTGCCGACCCGGTCAACGGATTCAACGCCGTCGTCCACCGTGGAGCTGGTGTGGTAAAGGCTGTGGCCCCAGTAGCCAAGTTCGCTGCTCCGCTGGCCTATCCCGCCGTCGCCAAGGTTGCGGCTCCGCTGTACGGTTAAATCATGCCTCACGGATATCCCCCACCCTGTCTAGATATTTATTAGTCGTCCCATGTTTACCCCAAAATCCTCCCATCCCTTCACATCCTTTGCAAATGAGAGCTTCACGAAAATGTAGTTATTTTTGTTTGACTGTGTGACTGAATAAAGTGCAAGATGGTTATA] [+] EMBL BX626143 [ ACAAGAGAAAATGGCCCTCCGGTTTGCCGTTCTTGCCGCGTTCGTCGCTACCGCCAGTGCCGTCGCCATTGGATATCCGGCTCCCTACGGGGCATACCCGGCGGTGGCCAAGGTTGCTGCTCCGTTGGCCGACTACGACCCTAACCCACAGTACAGCTACAGTTACGCAGTATCGGATGCTCTCACCGGTGACAACAAGAGCCAGCAGGAGTCCCGCTCGGGAGATGTCGTCAGCGGATCGTACTCGCTCATCGAGCCCGATGGTACCCAGCGTGTCGTTGAATACACTGCCGACCCGGTCAACGGATTCAACGCCGTCGTCCACCGTGGAGCTGGTGTGGTAAAGGCTGTGGCCCCAGTAGCCAAGTTCGCTGCTCCGCTGGCCTATCCCGCCGTCGCCAAGGTTGCGGCTCCGCTGTACGGTTAAATCATGCCTCACGGATATCCCCCACCCTGTCTAGATATTTATTAGTCGTCCCATGTTTACCCCAAAATCCTCCCATCCCTTCACATCCTTTGCAAATGAGAGCTTCACGAAAATGTAGTTATTTTTGTTTGACTGTGTGACTGAATAAAGTGCAAGATG ] [+] EMBL BX626727 [ ATGGCCCTCCGGTTTGCCGTTCTTGCCGCGTTCGTCGCTACCGCCAGTGCCGTCGCCATTGGATATCCGGCTCCCTACGGGGCATACCCGGCGGTGGCCAAGGTTGCTGCTCCGTTGGCCGACTACGACCCTAACCCACAGTACAGCTACAGTTACGCAGTATCGGATGCTCTCACCGGTGACAACAAGAGCCAGCAGGAGTCCCGCTCGGGAGATGTCGTCAGCGGATCGTACTCGCTCATCGAGCCCGATGGTACCCAGCGTGTCGTTGAATACACTGCCGACCCGGTCAACGGATTCAACGCCGTCGTCCACCGTGGAGCTGGTGTGGTAAAGGCTGTGGCCCCAGTAGCCAAGTTCGCTGCTCCGCTGGCCTATCCCGCCGTCGCCAAGGTTGCGGCTCCGCTGTACGGTTAAATCATGCCTCACGGATATCCCCCACCCTGTCTAGATATTTATTAGTCGTCCCATGTTTACCCCAAAATCCTCCCATCCCTTCACATCCTTTGCAAATGAGAGCTTCACGAAAATGTAGTTATTTTTGTTTGACTGTGTGACTGAATAAAGTGCAAGATGGTTA ] [+] EMBL BX621845 [ TGGCCCTCCGGTTTGCCGTTCTTGCCGCGTTCGTCGCTACCGCCAGTGCCGTCGCCATTGGATATCCGGCTCCCTACGGGGCATACCCGGCGGTGGCCAAGGTTGCTGCTCCGTTGGCCGACTACGACCCCAACCCGCAGTACAGCTAC GTTACGCGGTATCGGATGCTCTGACCGGTGATAACAAGAGCCAGCAGGAATCCCGCTCGGGAGATGTCGTCAGCGGATCGTACTCGCTCATCGAGCCCGATGGCACCCAGCGTGTCGTTGAGTACACTGCCGACCCGGTCAACGGATTCAACGCCGTCGTCCACCGTGGAGCTGGTGTGGTAAAGGCTGTGGCCCCAGTAGCCAAGTTCGCTGCTCCGCTGGCCTACCCCGCCGTCGCCAAGGTTGCGGCTCCGCTGTACGGTTAAATCATGCCTCACGGATATCCCCCACCCTGTCTAGATATTTATTAGTCGTCCCATGTTTACCCCAAAATACTCCCATCCCTTCACATCCTTTGCAAATGAGAGCTTCACGAAAATGTAGTTATTTTTGTTTGACTGTGTGACTGAATAAAGTGCAAGATGGTTAT ] [+] EMBL BX627660 [ ACCGCCAGTGCCGTCGCCATTGGATATCCGGCTCCCTACGGGGCATACCCGGCGGTGGCCAAGGTTGCTGCTCCGTTGGCCGACTACGACCCCAACCCGCAGTACAGCTACAGTTACGCGGTATCGGATGCTCTGACCGGTGATAACAAGAGCCAGCAGGAATCCCGCTCGGGAGATGTCGTCAGCGGATCGTACTCGCTCATCGAGCCCGATGGCACCCAGCGTGTCGTTGAGTACACTGCCGACCCGGTCAATGGATTCAACGCCGTCGTCCACCGTGGAGCTGGTGTGGTAAAGGCTGTGGCCCCAGTAGCCAAGTTCGCTGCTCCGCTGGCCTACCCCGCCGTCGCCAAGGTTGCGGCTCCGCTGTACGGTTAAATCATGCCTCACGGATATCCCCCACCCTGTCTAGATATTTATTAGTCGTCCCATGTTTACCCCAAAATACTCCCATCCCTTCACATCCTTTGCAAATGAGAGCTTCACGAAAATGTAGTTATTTTTGTTTGACTGTGTGACTGAATAAAGTGCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7607#1 ----------------------------------AATNGCCCGAGTTNCC-TCCGGTTTG 25 consensus_7607#2 -------------------AGGACCCAACACAGCACAAGAGAAAATGGCCCTCCGGTTTG 41 consensus_7607#0 AAGGATCTGATTCTGCTCTAAAACAACCTGCGACTATATTCGATTTGGTTTCACAGTTTG 60 * * ***** consensus_7607#1 C-GTTCTTGCCGCGT-CGTCGCTACCGCCAGTGCCGTCGCCATTGGATATCCGGCTCCCT 83 consensus_7607#2 CCGTTCTTGCCGCGTTCGTCGCTACCGCCAGTGCCGTCGCCATTGGATATCCGGCTCCCT 101 consensus_7607#0 CCGTTCTTGCCGCGTTCGTCGCTACCGCCAGTGCCGTCGCCATTGGATATCCGGCTCCCT 120 * ************* ******************************************** consensus_7607#1 ACGGGGCATACCCGGCGGTGGCCAAGGTTGCTGCTCCGTTGGCCGACTACGACCCTAACC 143 consensus_7607#2 ACGGGGCATACCCGGCGGTGGCCAAGGTTGCTGCTCCGTTGGCCGACTACGACCCTAACC 161 consensus_7607#0 ACGGGGCATACCCGGCGGTGGCCAAGGTTGCTGCTCCGTTGGCCGACTACGACCCCAACC 180 ******************************************************* **** consensus_7607#1 CACAGTACAGCTACAGTTACGCAGTATCGG------------------------------ 173 consensus_7607#2 CACAGTACAGCTACAGTTACGCAGTATCGG------------------------------ 191 consensus_7607#0 CGCAGTACAGCTACAGTTACGCGGTATCGGTAAGTATGCACGTCCAGCAACACCAGCGAT 240 * ******************** ******* consensus_7607#1 -----------------------------------------------------ATGCTCT 180 consensus_7607#2 -----------------------------------------------------ATGCTCT 198 consensus_7607#0 CCATCATGGAATCACTGTTTACATTTTCCACCTGTCCCTCCGAAATTGCTAGGATGCTCT 300 ******* consensus_7607#1 CACCGGTGACAACAAGAGCCAGCAGGAGTCCCGCTCGGGAGATGTCGTCAGCGGATCGTA 240 consensus_7607#2 CACCGGTGACAACAAGAGCCAGCAGGAGTCCCGCTCGGGAGATGTCGTCAGCGGATCGTA 258 consensus_7607#0 GACCGGTGATAACAAGAGCCAGCAGGAATCCCGCTCGGGAGATGTCGTCAGCGGATCGTA 360 ******** ***************** ******************************** consensus_7607#1 CTCGCTCATCGAGCCCGATGGTACCCAGCGTGTCGTTGAATACACTGCCGACCCGGTCAA 300 consensus_7607#2 CTCGCTCATCGAGCCCGATGGTACCCAGCGTGTCGTTGAATACACTGCCGACCCGGTCAA 318 consensus_7607#0 CTCGCTCATCGAGCCCGATGGCACCCAGCGTGTCGTTGAGTACACTGCCGACCCGGTCAA 420 ********************* ***************** ******************** consensus_7607#1 CGGATTCAACGCCGTCGTCCACCGTGGAGCTGGTGTGGTAAAGGCTGTGGCCCCAGTAGC 360 consensus_7607#2 CGGATTCAACGCCGTCGTCCACCGTGGAGCTGGTGTGGTAAAGGCTGTGGCCCCAGTAGC 378 consensus_7607#0 CGGATTCAACGCCGTCGTCCACCGTGGAGCTGGTGTGGTAAAGGCTGTGGCCCCAGTAGC 480 ************************************************************ consensus_7607#1 CAAGTTCGCTGCTCCGCTGGCCTATCCCGCCGTCGCCAAGGTTGCGGCTCCGCTGTACGG 420 consensus_7607#2 CAAGTTCGCTGCTCCGCTGGCCTATCCCGCCGTCGCCAAGGTTGCGGCTCCGCTGTACGG 438 consensus_7607#0 CAAGTTCGCTGCTCCGCTGGCCTACCCCGCCGTCGCCAAGGTTGCGGCTCCGCTGTACGG 540 ************************ *********************************** consensus_7607#1 TTAAATCATGCCTCACGGATATCCCCCACC-TGTCTAGATATTTATTAGTCGTCCCATGT 479 consensus_7607#2 TTAAATCATGCCTCACGGATATCCCCCACCCTGTCTAGATATTTATTAGTCGTCCCATGT 498 consensus_7607#0 TTAAATCATGCCTCACGGATATCCCCCACCCTGTCTAGATATTTATTAGTCGTCCCATGT 600 ****************************** ***************************** consensus_7607#1 TTACCCCAAAATCCTCCCATCCCTTCACATCCTTTGCAAATGA-AGCTTCACGAAACATG 538 consensus_7607#2 TTACCCCAAAATCCTCCCATCCCTTCACATCCTTTGCAAATGAGAGCTTCACGAAA-ATG 557 consensus_7607#0 TTACCCCAAAATACTCCCATCCCTTCACATCCTTTGCAAATGAGAGCTTCACGAAA-ATG 659 ************ ****************************** ************ *** consensus_7607#1 TAGTTATAGT-ACAGACCTGTGTGACTGAA-TAAAGTGCAAGATGGTTATAAAAATCATA 596 consensus_7607#2 TAGTTATTTTTGTTTGACTGTGTGACTGAA-TAAAGTGCAAGATGGTTATA--------- 607 consensus_7607#0 TAGTTATTTTTGTTTGACTGTGTGACTGAAATAAAGTGCAAG------------------ 701 ******* * ************* *********** consensus_7607#1 AACAAACAAAGACAAAA 613 consensus_7607#2 ----------------- consensus_7607#0 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||