These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 843 fasta sequence [GATCGGCCCAGGGTTTTNTTCCGC-TG-GTCGCCCGGCGTGTTTTTCCCAATTTGCTAGAGAAAAGCTAGTTTTTCTTGTTTTGCTTTCAGTGTGCTTTCGGCAAAATGTCCAGCTCCGAGAGTGACGGCATGTCCGACGTGGAGGAGGCAGCAAGGGCTGCAGCAAACGGGGACGATTCCTCCGACCAGGAGGAGAACGGCTCCGGCACGGACGTTGACGAAGAGCAGGACGGACAGGCGGAAAATGGTACCGACGTGAGCAAATCGTGGGAAGACTTGGGTCTCATCGACACGCTCTGCACCGCCTGCCGTGGGCTGAAATGGAAAGCACCGTCGAAAATTCAGCGCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCTGGCGGAGACGGGCTCCGGTAAGACGGGTGCGTTCGCCCTGCCCATCCTGCAGGCCCTGCTCGACAATCCGCAGCGCTACTTTGCCGTCGTGCTGAGGCCGACGCGCGAACTTGCCTACCAGATATCGGAACAGTTCGAGGCGCTGGGCGCTACGATCGGTGTCAAGTGCTGCGTGATTGTCGGCGGCCATGGATCTGGTGACGCAAGCGATACAGCTCGCCCGCAAACCGCACATCATCATAGCCGACGCCGGGCCGGCTGGTCGA-CATCTGGAAAACACGAAGGGCTTCAGCCTGAAGGCCATCCGGTACCTGGTGATGGACGAGGCGGACCGCATCCTCAACATGGACTTCGAGGAGGAGGTAAACAAAATCCTCAAGGTGATGCCGCGCGAACGGCGCACCTTCCTGTTCAGCGCCACCATGACGAAGAAGGTGAAAAAGCTCGAGCGC] [+] EMBL AL934692 [GATCGGCCCAGGGTTTTNTTCCGC TGTGTCGCCCGGCGTGTTTTTCCCAATTTGCTAGAGAAAAGCTAGTTTTTCTTGTTTTGCTTTCAGTGTGCTTTCGGCAAAATGTCCAGCTCCGAGAGTGACGGCATGTCCGACGTGGAGGAGGCAGCAAGGGCTGCAGCAAACGGGGACGATTCCTCCGACCAGGAGGAGAACGGCTCCGGCACGGACGTTGACGAAGAGCAGGACGGACAGGCGGAAAATGGTACCGACGTGAGCAAATCGTGGGAAGACTTGGGTCTCATCGACACGCTCTGCACCGCCTGCCGTGGGCTGAAATGGAAAGCACCGTCGAAAATTCAGCGCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCTGGCGGAGACGGGCTCCGGTAAGACGGGTGCGTTCGCCCTGCCCATCCTGCAGGCCCTGCTCGACAATCCGCAGCGCTACTTTGCCGTCGTGCTGAGGCCGACGCGCGAACTTGCCTACCAGATATCGGAACAGTTCGAGGCGCTGGGCGCTACGATCGGTGTCAAGTGCTGCGTGATTGTCGGCGGCCATGGATCTGGTGACGCAAGCGATACAGCTCGCCCGCAAACCGCACATCATCATAGCCGACGCCGGGCCGGCTGGTCGA CATCTGGA ] [+] EMBL BM593356 [ ccgcggaCGCGTG GGCGCCCGGCGTGTTTTTCCCAATTTGCTAGAGAAAAGCTAGTTTTTCTTGTTTTGCTTTCAGTGTGCTTTCGGCAAAATGTCCAGCTCCGAGATTGACGGCATGTCCGACGTGGAGGAGGCAGCAAGGGCTGCAGCAAACGGGGACGATTCCTCCGACCAGGAGGAGAACGGCTCCGGCACGGACGTTGACGAAGAGCAGGACGGACAGGCGGAAAATGGTACCGACGTGAGCAAATCGTGGGAAGACTTGGGTCTCATCGACACGCTCTGCACCGCCTGCCGTGGGCTGAAATGGAAAGCACCGTCGAAAATTCAGCGCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCTGGCGGAGACGGGCTCCGGTAAGACGGGTGCGTTCGCCCTGCCCATCCTGCAGGCCCTGCTCGACAATCCGCAGCGCTACTTTGCCGTCGTG ] [+] EMBL BM613677 [ cCGATTCCTCCGACCAGGAGGAGAACGGCTCCGGCACGGACGGTGACGAAGAGCAGGACGGACAGGCGGAAAATGGTACCGACGTGAGCAAATCGTGGGAAGACTTGGGTCTCATCGACACGCTCTGCACCGCCTGCCGTGGGCTGAAATGGAAAGCACCGTCGAAAATTCAGCGCGAAGCCATCCCGCTCGCCCTGCAAGGCAAGGACATTATCGGGCTGGCGGAGACTGGCTCCGGTAAGACGGGTGCGTTCGCCCTGCCCATCCTACAGGCCCTGCTCGACAATCCGCAGCGCTACTTTGCCGTCGTGCTGACGCCGACGCGCGAACTTGCCTACCAGATATCGGAACAGTTCGAGGCGCTGGGCGCTACGATCGGTGTCAAGTGCTGCGTGATTGTCGGCGG CATGGATCTGGTGACGCAGGCGATACAGCTCGCCCGCAAACCGCACATCATCATAG CGACGCCGGGCCGGCTGGTCGACCATCTGGAAAACACGAAGGGCTTCAGCCTGAAGGCCATCCGGTACCTGGTGATGGACGAGGCGGACCGCATCCTCAACATGGACTTCGAGGAGGAGGTAAACAAAATCCTCAAGGTGATGCCGCGCGAACGGCGCACCTTCCTGTTCAGCGCCACCATGACGAAGAAGGTGAAAAAGCTCGAGCGC] consensusID : consensus_7614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 736 fasta sequence [CCGNGGTTAAGTGCACGTTGTTTTCGCTGTGTCGCCGGCGTGTTTTTCCCAATTTGCTAGAGAAAAGCTAGTTTTTCTATGTATTTTGCTTTCAGTGTGCTTTCGGCAAAATGTCCAGCTCCGAGAGTGACGGCATGTCCTGACGTGGAGTGAGTGCAGCAAGGGCTGCAGCAAACGGGTGACTGATTCCTCCGACCAGGAGTGAGAACTGGCTCCGGCACTGGACTGTTGACGAAGAGCAGTGACGGACAGGCGGAAAATGGTACCTGACGTGATGCAAATCGTGGGAAGACTTGGGTCTCATCGACACGCTACTGCACCTGCCTGCCGTGGGCTGCAAATGGAAAGCACCGTCGAAAATTCAGCTGCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCTAGGCGGAGACAGGGCTCCGGTAAGACAGGGTGNGTACAGACCCTGACCATCCTGCAGGCCCTGCTCGACAATACCGAGAGCTACTATTAGACGTACNTAGCTAGAAGACNCAGAACNCAGCCAACCTTGACCCTAAACACAGCATATACGGAAACCAGGATTCCGAGGGCNCGGCNNCTGTGNAGCAGGCCTCACAGAATACGAGCTTGTCCACAGNTGNCCTAGAAGCTGAAACTATGGTCCCGAGACGAGGCGAATGGAATNCTTGGTTGAACNGCCACAGCCGNAATCACACGACTACGGCCCCGCCAAACCCGGAACCA] [+] EMBL AL929948 [CCGNGGTTAAGTGCACGTTGTTTTCGCTGTGTCGCCGGCGTGTTTTTCCCAATTTGCTAGAGAAAAGCTAGTTTTTCTATGTATTTTGCTTTCAGTGTGCTTTCGGCAAAATGTCCAGCTCCGAGAGTGACGGCATGTCCTGACGTGGAGTGAGTGCAGCAAGGGCTGCAGCAAACGGGTGACTGATTCCTCCGACCAGGAGTGAGAACTGGCTCCGGCACTGGACTGTTGACGAAGAGCAGTGACGGACAGGCGGAAAATGGTACCTGACGTGATGCAAATCGTGGGAAGACTTGGGTCTCATCGACACGCTACTGCACCTGCCTGCCGTGGGCTGCAAATGGAAAGCACCGTCGAAAATTCAGCTGCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCTAGGCGGAGACAGGGCTCCGGTAAGACAGGGTGNGTACAGACCCTGACCATCCTGCAGGCCCTGCTCGACAATACCGAGAGCTACTATTAGACGTACNTAGCTAGAAGACNCAGAACNCAGCCAACCTTGACCCTAAACACAGCATATACGGAAACCAGGATTCCGAGGGCNCGGCNNCTGTGNAGCAGGCCTCACAGAATACGAGCTTGTCCACAGNTGNCCTAGAAGCTGAAACTATGGTCCCGAGACGAGGCGAATGGAATNCTTGGTTGAACNGCCACAGCCGNAATCACACGACTACGGCCCCGCCAAACCCGGAACCA] consensusID : consensus_7614#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 681 fasta sequence [CCGATCAAAGTGCACGTTGTTTTCCGCCCGTCCGGCGTG-TTTTCCCAATTTGCTGGAGAAAAGCTAGTTTTTCTTGTTTTGCTTTCAGTGTGCTTCCGGCAAAATGTCCAGCTCCGAGAGTGACGGCATGTCCGACGTGGAGGAGGCAGCAAGGGCTGCTGCAAACGGGGACGATTCCTCCGACCAGGAGGAGAACGGCTCCGGCACGGACGGTGACGAAGAGCAGGACGGACAGGCGGAAAATGGTACCGACGTGAGCAAATCGTGGGAAGACTTGGGTCTCATCGACACGCTCTGCACCGCCTGCCGTGGGCTGAAATGGAAAGCACCGTCGAAAATTCAGCGCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCTGGCGGAGACTGGCTCCGGTAAGACGGGTGCGTTCGCCCTGCCCATCCTACAGGCCCTGCTCGACAATCCGCAGCGCTACTTTGCCGTCGTGCTGACGCCGACGCGCGAACTTGCCTACCAGATATCGGAACAGTTCGAGGCGCTGGGCGCTACGATCGGTGTCAAGTGCTGCGTGATTGTCGGCGGCATGGATCT-GGTGACGCAGGCGATACAGCTCGCCCGCAAACCGCACATCATCATAGCGACGCCGGGCCGGCTGGTCGACCATCTGGAAAACACGAAGGGCTTCAG] [+] EMBL BM602176 [CCGATCAAAGTGCACGTTGTTTTCCGCCCGTCCGGCGTGTTTTTCCCAATTTGCTGGAGAAAAGCTAGTTTTTCTTGTTTTGCTTTCTGTGTGCTTTCGGTAAAATGTCCAGCTCCGAGAGTGACGGCATGTCCGACGTGGAGGAGGCAGCAAGGGCTGCTGCAAACGGGGACGATTCCTCCAACCAGGAGGAGAACGGCTCCGGCACGGACGTTGACGAAGAGCAGGATGGACAGGCGGAAAACGGTACCGACGTGAGCAAATCGTGGGAAGACTTGGGTCTGATCGACACGCTCTGCACCGCCTGCCGTGGGCTGAAATGGAAAGCACCGTCGAAAATTCAGCGCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCTGGCGGAGACTGGCTCCGGTAAGACGGGTGCGTTCGCCCTGCCCATCCTACAGGCCCTGCTCGACAATCCGCAGCGCTACTTTGCCGTCGTGCTGACGCCGACGCGCGAACTTGCCTACCAGATATCGGAACAGTTCGAGGCGCTGGGCGCTACGATCGGTGTCAAGTGCTGCGTGATTGTCGGCGGCATGGATCT GGTGACGCAGGCGATACAGCTCGCCCGCAAACCGCACATCATCATAGCGACGCCGGGCCGGCTGGTCGACCATCTGGAAAACACGAAGGGCTTCAG] [+] EMBL BM584372 [CCGATCAAAGTGCACGTTGTTTTCCGCCCGTCCGGCGTG TTCTCCCAATTTGCTGGAGAAAAGCTAGTTTTTCTTGTTTTGCTTTCAGTGTGCTTCCGGCAAAATGTCCAGCTCCGAGAGTGACGGCATGTCTGATGTGGAGGAGGCAGCAAGGGCTGCTGCAAACGGGGACGATTCCTCCGACCAGGAGAAGAACGGCTCCGGCACAGACGGTGACGAAGAGCAGGACGGACAGGCGGAAAATGGTACCGACGTGAGCAAATCGTGGGAAGACTTGGGTCTCATCGACACGCTCTGCACCGCCTGCCGTGGGCTGAAATGGAAAGCACCGTCGAAAATTCAGCGCGAAGCCATCCCGCTCGCCCTGCAGGGCATGGACATTATCGGGCTGGCGGAGACGGGCTCCGGTAAGACGGGTGCGTTCGCCCTGCCCATCCTGCAGGCCCTGCTCGACAATCCGCAGCGCTACTTTGCCGTCGTGCTGACGCCGACGCGCGAACTTGCCTACCAGATATCGGAACAGTTCGAGGCGCTGGGCGCTACGATCGGTGTCAAGTGCTGCGTGATTGTCGGCGGCATGGATCTGGGTGACGCAGGCGATACAGCTCGCCCGCAAACCGCACATCATCATAGCGACGCCGGGCCGG ] [+] EMBL BM644406 [ ccgGTTGTTTTCCGCCCGTCCGGCGTG TTTTCCCAATTTGCTGGAGAAAAGCTAGTTTTTCTTGTTTTGTTTTCAGTGTGCTTCCTGCAAAATGTCCAGCTCCGAGAGTGACGGCATGTCCGACGTGGAGGAGGCAGCAAGGGCTGCTGCAAACGGGGACGATTCCTCCGACCAGGAGGAGAACGGCTCCGGCACGGACGGTGACGAAGAGCAGGACGGACAGGCGGAAAATGGTACCGACGTGAGCAAATCGTGGGAAGACTTGGGTCTCATCGACACGCTCTGCACCGCCTGCCGTGGGCTGAAATGGAAAGCACCGTCGAAAATTCAGCGCGAAGCCATCCCGCTCGCCCTGCAAGGCAAGGACATTATCGGGCTGGCGGAGACTGGCTCCGGTAAGACGGGTGCGTTCGCCCTGCCCATCCTACAGGCCCTGCTCGACAATCCGCAGCGCTACTTTGCCGTCGTGCTGACGCCGACGCGCGAACTTGCCTACCAGATATCGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7614#0 ---GATCGGCCCAGG-GTTTTNTTCCGCTGGTCGCCCGGCGTGTTTTTCCCAATTTGCTA 56 consensus_7614#2 -CCGATCAAAGTGCACGTTGTTTTCCGCC---CGTCCGGCGTGTTTT-CCCAATTTGCTG 55 consensus_7614#1 CCGNGGTTAAGTGCACGTTGTTTTC-GCTGTGTCGCCGGCGTGTTTTTCCCAATTTGCTA 59 *** * *** ** ************ *********** consensus_7614#0 GAGAAAAGCTAGTTTTTCT---TGTTTTGCTTTCAGTGTGCTTTCGGCAAAATGTCCAGC 113 consensus_7614#2 GAGAAAAGCTAGTTTTTCT---TGTTTTGCTTTCAGTGTGCTTCCGGCAAAATGTCCAGC 112 consensus_7614#1 GAGAAAAGCTAGTTTTTCTATGTATTTTGCTTTCAGTGTGCTTTCGGCAAAATGTCCAGC 119 ******************* * ******************* **************** consensus_7614#0 TCCGAGAGTGACGGCATGTCC-GACGTGGAG-GAG-GCAGCAAGGGCTGCAGCAAACGGG 170 consensus_7614#2 TCCGAGAGTGACGGCATGTCC-GACGTGGAG-GAG-GCAGCAAGGGCTGCTGCAAACGGG 169 consensus_7614#1 TCCGAGAGTGACGGCATGTCCTGACGTGGAGTGAGTGCAGCAAGGGCTGCAGCAAACGGG 179 ********************* ********* *** ************** ********* consensus_7614#0 -GAC-GATTCCTCCGACCAGGAG-GAGAAC-GGCTCCGGCAC-GGAC-GTTGACGAAGAG 224 consensus_7614#2 -GAC-GATTCCTCCGACCAGGAG-GAGAAC-GGCTCCGGCAC-GGAC-GGTGACGAAGAG 223 consensus_7614#1 TGACTGATTCCTCCGACCAGGAGTGAGAACTGGCTCCGGCACTGGACTGTTGACGAAGAG 239 *** ****************** ****** *********** **** * ********** consensus_7614#0 CAG-GACGGACAGGCGGAAAATGGTACC-GACGTGA-GCAAATCGTGGGAAGACTTGGGT 281 consensus_7614#2 CAG-GACGGACAGGCGGAAAATGGTACC-GACGTGA-GCAAATCGTGGGAAGACTTGGGT 280 consensus_7614#1 CAGTGACGGACAGGCGGAAAATGGTACCTGACGTGATGCAAATCGTGGGAAGACTTGGGT 299 *** ************************ ******* *********************** consensus_7614#0 CTCATCGACACGCT-CTGCACC-GCCTGCCGTGGGCTG-AAATGGAAAGCACCGTCGAAA 338 consensus_7614#2 CTCATCGACACGCT-CTGCACC-GCCTGCCGTGGGCTG-AAATGGAAAGCACCGTCGAAA 337 consensus_7614#1 CTCATCGACACGCTACTGCACCTGCCTGCCGTGGGCTGCAAATGGAAAGCACCGTCGAAA 359 ************** ******* *************** ********************* consensus_7614#0 ATTCAGC-GCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCT-GGCGG 396 consensus_7614#2 ATTCAGC-GCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCT-GGCGG 395 consensus_7614#1 ATTCAGCTGCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCTAGGCGG 419 ******* ********************************************** ***** consensus_7614#0 AGAC-GGGCTCCGGTAAGAC-GGGTGCGTTCG--CCCTGCCCATCCTGCAGGCCCTGCTC 452 consensus_7614#2 AGAC-TGGCTCCGGTAAGAC-GGGTGCGTTCG--CCCTGCCCATCCTACAGGCCCTGCTC 451 consensus_7614#1 AGACAGGGCTCCGGTAAGACAGGGTGNGTACAGACCCTGACCATCCTGCAGGCCCTGCTC 479 **** ************** ***** ** * ***** ******* ************ consensus_7614#0 GACAATCCGCAGCGCTACTTTGCCGTCGTGCTGAGGCCGACGCGCGAACTTGCCTACCAG 512 consensus_7614#2 GACAATCCGCAGCGCTACTTTGCCGTCGTGCTGACGCCGACGCGCGAACTTGCCTACCAG 511 consensus_7614#1 GACAATACCGAGAGCTACTAT-TAGACGTACNTAGCTAGAAG-----ACN-------CAG 526 ****** * ** ****** * * *** * * ** * ** *** consensus_7614#0 ATATCGGAACAGTTCGAGGCGCTGGGCGCTACGATCGGTGTCAAGTGCTGCGTGATTGTC 572 consensus_7614#2 ATATCGGAACAGTTCGAGGCGCTGGGCGCTACGATCGGTGTCAAGTGCTGCGTGATTGTC 571 consensus_7614#1 AACNCAGCCAACCTTGACCCTAAACACAGCATATACGGAAACCAGGATTCCGAGGGCN-C 585 * * * * * ** * * * *** * ** * ** * * consensus_7614#0 GGCGGCCATGGATCTGGTGACGCAAGCGATACAGCTCGCCCGCAAACCGCACATCATCAT 632 consensus_7614#2 GGCGGC-ATGGATCTGGTGACGCAGGCGATACAGCTCGCCCGCAAACCGCACATCATCAT 630 consensus_7614#1 GGCNNCTGTGNAGCAGGCCTCACAGAATACG-AGCTTGTCCACAGNTGNCCTAGAAGCTG 644 *** * ** * * ** * ** * **** * ** ** * * * * consensus_7614#0 AGCCGACG---CCGGGCCG--GCTGGTCGAC-ATCTGGA-AAACACGAAGGGCTTCAGCC 685 consensus_7614#2 AGC-GACG---CCGGGCCG--GCTGGTCGACCATCTGGA-AAACACGAAGGGCTTCAG-- 681 consensus_7614#1 AAACTATGGTCCCGAGACGAGGCGAATGGAATNCTTGGTTGAACNGCCACAGCCGNAATC 704 * * * *** * ** ** * ** *** *** * ** * consensus_7614#0 TGAAGGCCATCCGGTACCTGGTGATGGACGAGGCGGACCGCATCCTCAACATGGACTTCG 745 consensus_7614#2 ------------------------------------------------------------ consensus_7614#1 ACACGACTACGGCCCCGCCAAACCCGGAACCA---------------------------- 736 consensus_7614#0 AGGAGGAGGTAAACAAAATCCTCAAGGTGATGCCGCGCGAACGGCGCACCTTCCTGTTCA 805 consensus_7614#2 ------------------------------------------------------------ consensus_7614#1 ------------------------------------------------------------ consensus_7614#0 GCGCCACCATGACGAAGAAGGTGAAAAAGCTCGAGCGC 843 consensus_7614#2 -------------------------------------- consensus_7614#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||