These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7637#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 940 fasta sequence [AATTCTCTCTGCCAACGCAATGGCTTTTACGGTTTAGTGCGGTTTAGTTTAGTAAATCAAATCAAATCAACTCGAATACAGTTTATCCATCGCTTCGTCAGCAGGCCAGCGGGCGGATAGCTCACGCGTTTAGTTTCGCCCCAGAACCGCACCAAGACGGTCACCCTTATTGAGCAGAAACCGCAGAACGTACGAAGCAGCAGATGGCCCCATCGGCAGTAAGCATGGTATTTACGGTGGAGAACGCCAAAACGGTTGGTGCGTTGGAAAAGGGACAGAAACCGCCTGGCGGGCATAGCTTCGACGAGGCGCTGGAGATGGCCGGATTCGGGCGGGTACAGATCGTCCTCTCGATTCTAGCCGGACTCGGCATGATGGCATCGATCAACGAAGCGATGGGCATGAGCATCATTCTCCCCGCCTCCCAGTGCGATCTCGATCTGGACGCTGGCGAGAAGGGTATAGTTGGAGGTGCTGTGTTTCTGGGTACAATGTGTTCGTCCTACTTCTGGGGCTATCTGGCTGATACGAGGGGCCGACAGCTGATCTTGAAGTACGCACTGTTTGCGACCTCGTTCTTCGGTGCGATCTCCTGTCTAGCGACTGGATTCACGTCGCTGCTGGTGCTCCGGTTTCTAACAGGTGTCTGTGTTGCTGCGCCTGCCTCTACGGTGTACGCTTATCTGGGCGAGTTCACCACCCCGAGCAGACGGAGTCAGATGCTGTCGTTTGCTTCCGTTTGGGGAGGTGTCGGAATCGTTTACGTATCATTGGTCGGTTGGTGGATACTCTCGTACGATTGGGTGTTGACTTTCTCCGACTCGTTTGAGTTTAAGCCATGGCGTTTGCTGTTTATCATCAACACGATGCCCGGCTTCTTGAATGGCATCGCATTCTGCTTCTGTCCCGAAAGTCCCAAATTTCTCGTCTCGCAAGGCCG] [+] EMBL CNS08FR7 [AATTCTCTCTGCCAACGCAATGGCTTTTACGGTTTAGTGCGGTTTAGTTTAGTAAATCAAATCAAATCAACTCGAATACAGTTTATCCATCGCTTCGTCAGCAGGCCAGCGGGCGGATAGCTCACGCGTTTAGTTTCGCCCCAGAACCGCACCAAGACGGTCACCCTTATTGAGCAGAAACCGCAGAACGTACGAAGCAGCAGATGGCCCCATCGGCAGTAAGCATGGTATTTACGGTGGAGAACGCCAAAACGGTTGGTGCGTTGGAAAAGGGACAGAAACCGCCTGGCGGGCATAGCTTCGACGAGGCGCTGGAGATGGCCGGATTCGGGCGGGTACAGATCGTCCTCTCGATTCTAGCCGGACTCGGCATGATGGCATCGATCAACGAAGCGATGGGCATGAGCATCATTCTCCCCGCCTCCCAGTGCGATCTCGATCTGGACGCTGGCGAGAAGGGTATAGTTGGAGGTGCTGTGTTTCTGGGTACAATGTGTTCGTCCTACTTCTGGGGCTATCTGGCTGATACGAGGGGCCGACAGCTGATCTTGAAGTACGCACTGTTTGCGACCTCGTTCTTCGGTGCGATCTCCTGTCTAGCGACTGGATTCACGTCGCTGCTGGTGCTCCGGTTTCTAACAGGTGTCTGTGTTGCTGCGCCTGCCTCTACGGTGTACGCTTATCTGGGCGAGTTCACCACCCCGAGCAGACGGAGTCAGATGCTGTCGTTTGCTTCCGTTTGGGGAGGTGTCGGAATCGTTTACGTATCATTGGTCGGTTGGTGGATACTCTCGTACGATTGGGTGTTGACTTTCTCCGACTCGTTTGAGTTTAAGCCATGGCGTTTGCTGTTTATCATCAACATGATGCCCGGCTTCTTGAATGGCATCGCATTCTGCTTCTGTCCCGAAAGTCCCAAATTTCTCGTCTCGCAAGGCCG] [+] EMBL BM630658 [ ccgCAAGACGGTCACCCTTATTGAGCAGAAACCGCAAAACGTCCGAAGTAGCAGATGGCCCCATCGGCAGTAAGCATGGTATTTACGGTGGAG AAAACGGTTGGTGCGTTGGAAAAGGGACAGAAACCGACGGGCGGGCATAGCTTTGACGAGGCGCTGGAGCTGGCCGGATTCGGGCGTGTACAGATCGTCCTCTCGATTCTAGCCGGACTCGGCATGATGGCATCGATCAACGAAGCGATGGGCATGAGCATCATTCTCCCCGCCTCTCAGTGCGATCTCGATCTGGACGCTGGCGAGAAGGGTATAGTTGGAGGTGCTGTGTTTCTAGGTACAATGTGTTCGTCCTACTTCTGGGGCTATCTGGCTGATACGAGGGGCCGACAGCTGATCTTGAAGTACGCACTGTTTGCGACCTCGTTCTTCGGTGCGATCTCCTGTCTGGCGACTGGATTCACGTCGCTGCTGGTGCTCCGGTTTCTAACAGGTGTCTGTGTTGCTGCGC ] [+] EMBL BM646762 [ TACGAAGCAGCAGATGGCCCCATCGGCAGTAAGCATGGTATTTACGGTGGAGAACGCCAAAACGGTTGGTGCGTTGGAAAAGGGACAGAAACCGCCTGGCGGGCATAGCTTCGACGAGGCGCTGGAGATGGCCGGATTCGGGCGGGTACAGATCGTACTCTCGATTCTAGCCGGACTCGGCATGATGGCATCGATCAACGAAGCGATGGGCATGAGCATCATTCTCCCCGCCTCCCAGTGCGATCTCGATCTGGACGCTGGCGAGAAGGGTATAGTTGGAGGTGCTGTGTTTCTGGGTACAATGTGTTCGTCCTACTTCTGGGGCTATCTGG ] [+] EMBL BM646739 [ ccgATTTACGGTGGAGAACGCCAAAACGGTTGGTGCGTTGGAAAAGGGACAGAAACCGCCTGGCGGGCATAGCTTCGACGAGGCGCTGGAGATGGCCGGATTCGGGCGGGTACAGATCGTACTCTCGATTCTAGCCGGACTCGGCATGATGGCATCGATCAACGAAGCGATGGGCATGAGCATCATTCTCCCCGCCTCCCAGTGCGATCTCGATCTGGACGCTGGCGAGAAGGGTATAGTTGGAGGTGCTGTGTTTCTGGGTACAATGTGTTCGTCCTACTTCTGGGGCTATCTGGCTGATACGAGGGGCCGACAGCTGATCTTGAAGTACGCACTGTTTGCGACCTCGTTCTTCGGTGCGATCTCCTGTCTAGCGACTGGATTCACGTCGCTGCTGGTGCTCCGGTTTCTAACAGGTGTCTGTGTTGCTGCGCCTGCCTCTACGGTGTACGCTTATCTGGGCGAGTTCACCACCCCGAGCAGACGGAGTCAGATGCTGTCGTTTGCTTCCGTTTGGGGAGGTGTCGGAATCGTTTACGTATCATTGGTCGGTTGGTGGATACTCTCGTACGATTGGGTGTTGACTTTCTCCGACTCGTTTGAGTTTAAGCCATGGCGTTTGCTGTTTATCATCAACACGATGCCCGGCTTCTTGAATGGCATCGCATTCTGCTTCTGTCCCGA ] [+] EMBL CNS08FTQ [ GGAGGTTTCGGAATCGTTTACGTATCATTGGTCGGTTGGTGGATACTCTCGTACGATTGGGTGTTGACTTTCTCCGACTCTTTTTAGTTTAA ] [+] EMBL BX606812 [ GACTTTCTCCGACTCGTTTGAGTTTAAGCCATGGCGTTTGCTGTTTATCATCAACACGATGCCCGGCTTCTTGAATGGCATCACATTCTGCTTCTGTCACGAAAGTCCCA ] consensusID : consensus_7637#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCTCTCTGCCAACGCAATGGCTTTTACGGTTTAGTGCGGTTTAGTTTAGTAAATCAAATCAAATCAACTCGAATACAGTTTATCCATCGCTTCGTGTGTGTCCCGTATCCGTATGCAGTCGTTTGCAGTGTGCTTTTGTTGTGTTTCCTTCTCTTTCCTGATGCGACTTCGTTTCCAATTTTGCGATTTGGTGTGTTTTTTTTAAGCCACAGATGATCCTCGCTGTCTCTTCTGGGCTGATGGAAGGAACGGCAGGCCAGCGGGCGGATAGCTCACGCGTTCAGTTTCGCCCCAGAACCGCACCAAGACGGTCACCCTCATTGAGCAGAAACCGCAGAACGTACGAAGCAGCAGATGGCCCCATCGGCAGTAAGCATGGTATTTACGGTGGAGAACGCCAAAACGGTTGGTGCGTTGGAAAAGGGACAGAAACCGCCTGGCGGGCATAGCTTCGACGAGGCGCTGGAGATGGCCGGATTCGGGCGGGTACAGATCGTACTCTCGATTCTAGCCGGACTCGGCATGATGGCATCGATCAACGAAGCGATGGGCATGAGCATCATTCTCCCCGCCTCCCAGTGCGATCTCGATCTGGACGCTGGCGAGAAAGGTATAGTTGGAGGTGCTGTGTTTCTGGGGTACAATGTGTTCGTCCTACTTCTGGGGCTATCTGGCTGA] [+] EMBL BM605001 [CCGCCCACGCGTCCGCCCACGCGTCCGCTCTCTGCCAACGCAATGGCTTTTACGGTTTAGTGCGGTTTAGTTTAGTAAATCAAATCAAATCAACTCGAATACAGTTTATCCATCGCTTCGTGTGTGTCCCGTATCCGTATGCAGTCGTTTGCAGTGTGCTTTTGTTGTGTTTCCTTCTCTTTCCTGATGCGACTTCGTTTCCAATTTTGCGATTTGGTGTGTTTTTTTTAAGCCACAGATGATCCTCGCTGTCTCTTCTGGGCTGATGGAAGGAACGGCAGGCCAGCGGGCGGATAGCTCACGCGTTCAGTTTCGCCCCAGAACCGCACCAAGACGGTCACCCTCATTGAGCAGAAACCGCAGAACGTACGAAGCAGCAGATGGCCCCATCGGCAGTAAGCATGGTATTTACGGTGGAGAACGCCAAAACGGTTGGTGCGTTGGAAAAGGGACAGAAACCGCCTGGCGGGCATAGCTTCGACGAGGCGCTGGAGATGGCCGGATTCGGGCGGGTACAGATCGTACTCTCGATTCTAGCCGGACTCGGCATGATGGCATCGATCAACGAAGCGATGGGCATGAGCATCATTCTCCCCGCCTCCCAGTGCGATCTCGATCTGGACGCTGGCGAGAAAGGTATAGTTGGAGGTGCTGTGTTTCTGGGGTACAATGTGTTCGTCCTACTTCTGGGGCTATCTGGCTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7637#0 ------------------------------------------------------------ consensus_7637#1 CCGCCCACGCGTCCGCCCACGCGTCCGCTCTCTGCCAACGCAATGGCTTTTACGGTTTAG 60 consensus_7637#0 ------------------------------------------------------------ consensus_7637#1 TGCGGTTTAGTTTAGTAAATCAAATCAAATCAACTCGAATACAGTTTATCCATCGCTTCG 120 consensus_7637#0 ----------------------------------------------------AATTCTCT 8 consensus_7637#1 TGTGTGTCCCGTATCCGTATGCAGTCGTTTGCAGTGTGCTTTTGTTGTGTTTCCTTCTCT 180 ****** consensus_7637#0 CTGCCAACGCAATGGCTTTTACGGTTTAGTGCGGTTTAGTTTAGTAAATCAAATC---AA 65 consensus_7637#1 TTCCTGATGCGACTTCGTTTCCAATTT--TGCGATTTGGTGTGTTTTTTTTAAGCCACAG 238 * * * ** * * *** * *** **** *** ** * * * ** * * consensus_7637#0 ATCAACTCGAATACAGTTTATCCATCGCTTCGT----CAGCAGGCCAGCGGGCGGATAGC 121 consensus_7637#1 ATGATCCTCGCTGTCTCTTCTGGGCTGATGGAAGGAACGGCAGGCCAGCGGGCGGATAGC 298 ** * * * ** * * * * ********************* consensus_7637#0 TCACGCGTTTAGTTTCGCCCCAGAACCGCACCAAGACGGTCACCCTTATTGAGCAGAAAC 181 consensus_7637#1 TCACGCGTTCAGTTTCGCCCCAGAACCGCACCAAGACGGTCACCCTCATTGAGCAGAAAC 358 ********* ************************************ ************* consensus_7637#0 CGCAGAACGTACGAAGCAGCAGATGGCCCCATCGGCAGTAAGCATGGTATTTACGGTGGA 241 consensus_7637#1 CGCAGAACGTACGAAGCAGCAGATGGCCCCATCGGCAGTAAGCATGGTATTTACGGTGGA 418 ************************************************************ consensus_7637#0 GAACGCCAAAACGGTTGGTGCGTTGGAAAAGGGACAGAAACCGCCTGGCGGGCATAGCTT 301 consensus_7637#1 GAACGCCAAAACGGTTGGTGCGTTGGAAAAGGGACAGAAACCGCCTGGCGGGCATAGCTT 478 ************************************************************ consensus_7637#0 CGACGAGGCGCTGGAGATGGCCGGATTCGGGCGGGTACAGATCGTCCTCTCGATTCTAGC 361 consensus_7637#1 CGACGAGGCGCTGGAGATGGCCGGATTCGGGCGGGTACAGATCGTACTCTCGATTCTAGC 538 ********************************************* ************** consensus_7637#0 CGGACTCGGCATGATGGCATCGATCAACGAAGCGATGGGCATGAGCATCATTCTCCCCGC 421 consensus_7637#1 CGGACTCGGCATGATGGCATCGATCAACGAAGCGATGGGCATGAGCATCATTCTCCCCGC 598 ************************************************************ consensus_7637#0 CTCCCAGTGCGATCTCGATCTGGACGCTGGCGAGAAGGGTATAGTTGGAGGTGCTGTGTT 481 consensus_7637#1 CTCCCAGTGCGATCTCGATCTGGACGCTGGCGAGAAAGGTATAGTTGGAGGTGCTGTGTT 658 ************************************ *********************** consensus_7637#0 TCTGGG-TACAATGTGTTCGTCCTACTTCTGGGGCTATCTGGCTGATACGAGGGGCCGAC 540 consensus_7637#1 TCTGGGGTACAATGTGTTCGTCCTACTTCTGGGGCTATCTGGCTGA-------------- 704 ****** *************************************** consensus_7637#0 AGCTGATCTTGAAGTACGCACTGTTTGCGACCTCGTTCTTCGGTGCGATCTCCTGTCTAG 600 consensus_7637#1 ------------------------------------------------------------ consensus_7637#0 CGACTGGATTCACGTCGCTGCTGGTGCTCCGGTTTCTAACAGGTGTCTGTGTTGCTGCGC 660 consensus_7637#1 ------------------------------------------------------------ consensus_7637#0 CTGCCTCTACGGTGTACGCTTATCTGGGCGAGTTCACCACCCCGAGCAGACGGAGTCAGA 720 consensus_7637#1 ------------------------------------------------------------ consensus_7637#0 TGCTGTCGTTTGCTTCCGTTTGGGGAGGTGTCGGAATCGTTTACGTATCATTGGTCGGTT 780 consensus_7637#1 ------------------------------------------------------------ consensus_7637#0 GGTGGATACTCTCGTACGATTGGGTGTTGACTTTCTCCGACTCGTTTGAGTTTAAGCCAT 840 consensus_7637#1 ------------------------------------------------------------ consensus_7637#0 GGCGTTTGCTGTTTATCATCAACACGATGCCCGGCTTCTTGAATGGCATCGCATTCTGCT 900 consensus_7637#1 ------------------------------------------------------------ consensus_7637#0 TCTGTCCCGAAAGTCCCAAATTTCTCGTCTCGCAAGGCCG 940 consensus_7637#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||