These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7638#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [CCGCCCACGCGTCCGGAAACTCTCTGTGTCAAATGTCAAAAGGCCAGCAGTATTTCGGTGTTTCAGAAAGTTTTTACACAAAAAAGTAGCGTAAAATTACTCGCTTCCCGTTTGGGTGTAATTTAGTTTCCCCCCATTTTAGGCCCCCCGGTGCGTGCGTGTTTTTAAGCTTGTAGTTTACGCATTCCTTTCGGAACCTTCTTCCTTCGGATGACCATCTGCGAGAGCCGCAAGATTTCGTAGTGGGAAGAATATTGCACCAACACGCAAAGCAACTGTGCCACCGGGACATAACTGTGTAGGAACCGCCGCGCACGAACAGCAGTGGCCCAACACTCGCTAGACTGCGATATGGCTGAAACGGTGACGGATGCACCCTCGGAACCAGCCCATCCGGGGATGAGCCTGCAGGAAGGCACGGATGCTGGGATGCTTGGAGCGGCCGGCACAACAAACACCATCATCACCAGTACCACCACCACAAAACAATACAAAAATGGACTGAAACTGGCGAAGCAGATACTCTCCAACCCGAAGTTCACCGAGCATGGCGAAACGCTCGCCATGAAGGGTTTGACGCTCAACTGTCTCGGCCGGAAGGACGAAGCGTACGATCACGTTCGCTGCGGGCTGCGGAACGATCTGAAAGTCGCACGTGTGCTGGCACTTGTACGGGCTGCT] [+] EMBL BM585157 [CCGCCCACGCGTCCGGAAACTCTCTGTGTCAAATGTCAAAAGGCCAGCAGTATTTCGGTGTTTCAGAAAGTTTTTACACAAAAAAGTAGCGTAAAATTACTCGCTTCCCGTTTGGGTGTAATTTAGTTTCCCCCCATTTTAGGCCCCCCGGTGCGTGCGTGTTTTTAAGCTTGTAGTTTACGCATTCCTTTCGGAACCTTCTTCCTTCGGATGACCATCTGCGAGAGCCGCAAGATTTCGTAGTGGGAAGAATATTGCACCAACACGCAAAGCAACTGTGCCACCGGGACATAACTGTGTAGGAACCGCCGCGCACGAACAGCAGTGGCCCAACACTCGCTAGACTGCGATATGGCTGAAACGGTGACGGATGCACCCTCGGAACCAGCCCATCCGGGGATGAGCCTGCAGGAAGGCACGGATGCTGGGATGCTTGGAGCGGCCGGCACAACAAACACCATCATCACCAGTACCACCACCACAAAACAATACAAAAATGGACTGAAACTGGCGAAGCAGATACTCTCCAACCCGAAGTTCACCGAGCATGGCGAAACGCTCGCCATGAAGGGTTTGACGCTCAACTGTCTCGGCCGGAAGGACGAAGCGTACGATCACGTTCGCTGCGGGCTGCGGAACGATCTGAAAGTCGCACGTGTGCTGGCACTTGTACGGGCTGCT] consensusID : consensus_7638#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 634 fasta sequence [CCGGAAAACGTGCACGGCCGACAAGTTTAGCCACTGCTTCTACGTGTTCTTCGCCGTACGCCTGCCTCCTGGTTCCCGTGGTTTGCCGAGTGTTGGATTCATCTAGCCGACCGGAGTTGTTTGCTGACGGTACGAAAGCGACACAAACACCGCAAAATGCCTTCCAGTGACCCGTTGCCACCGAAGGAAAGTGCCCTGTTCCGCAAGATACTGAAATGCTACGAAATGAAACAATACAAAAATGGACTGAAACTGGCGAAGCAGATACTCTCCAACCCGAAGTTCACCGAGCATGGCGAAACGCTCGCCATGAAGGGTTTGACGCTCAACTGTCTCGGCCGGAAGGACGAAGCGTACGATCACGTTCGCCGCGGGCTGCGGAACGATCTGAAGTCGCACGTGTGCTGGCACGTGTACGGGCTGCTGCAGCGGTCGGACAAGAAGTACGACGAAGCGATCAAGTGCTACCGGAACGCGCTCAAGTGGGAGAAGGACAACATTCAGATCCTGCGCGATCTGTCGCTGCTGCAGATACAGATGCGCGACCTGGAGGGGTACCGGGAAACGCGGCACCAGCTGTTCAAGCTGCGGCCGTCCCAGCACGCCAGCTGGATTGGCTTTGCGATGAGTTACC] [+] EMBL BM653206 [CCGGAAAACGTGCACGGCCGACAAGTTTAGCCACTGCTTCTACGTGTTCTTCGCCGTACGCCTGCCTCCTGGTTCCCGTGGTTTGCCGAGTGTTGGATTCATCTAGCCGACCGGAGTTGTTTGCTGACGGTACGAAAGCGACACAAACACCGCAAAATGCCTTCCAGTGACCCGTTGCCACCGAAGGAAAGTGCCCTGTTCCGCAAGATACTGAAATGCTACGAAATGAAACAATACAAAAATGGACTGAAACTGGCGAAGCAGATACTCTCCAACCCGAAGTTCACCGAGCATGGCGAAACGCTCGCCATGAAGGGTTTGACGCTCAACTGTCTCGGCCGGAAGGACGAAGCGTACGATCACGTTCGCCGCGGGCTGCGGAACGATCTGAAGTCGCACGTGTGCTGGCACGTGTACGGGCTGCTGCAGCGGTCGGACAAGAAGTACGACGAAGCGATCAAGTGCTACCGGAACGCGCTCAAGTGGGAGAAGGACAACATTCAGATCCTGCGCGATCTGTCGCTGCTGCAGATACAGATGCGCGACCTGGAGGGGTACCGGGAAACGCGGCACCAGCTGTTCAAGCTGCGGCCGTCCCAGCACGCCAGCTGGATTGGCTTTGCGATGAGTTACC] [+] EMBL BX624897 [ GACGAGTTTAGCCACTGCTTCTACGTGTTCTTCGCCGTACGCCTGCCTCCTGGTTCCCGTGGTTTGCCGAGTGTTGGATTCATCTAGCCGACCGGAGTTGTTTGCTGACGGTACGAAAGCGACACAAACACCGCAAAATGCCTTCCAGTGACCCGTTGCCACCGAAGGAAAGTGCCCTGTTCCGCAAGATACTGAAATGCTACGAAATGAAACAATACAAAAATGGACTGAAACTGGCGAAGCAGATACTCTCCAACCCGAAGTTCACCGAGCATGGCGAAACGCTCGCCATGAAGGGTTTGACGCTCAACTGTCTCGGCCGGAAGGACGAAGCGTACGATCACGTTCGCCGCGGGCTGCGGAACGATCTGAAGTCGCACGTGTGCTGGCACGTGTACGGGCTGCTGCAGCGGTCGGACAAGAAGTACGACGAAGCGATCAAGTGCTACCGGAACGCGCTCAAGTGGGAGAAGGACAACATTCAGATCCTGCGCGATCTGTCGCTGCTGCAGATACAGATGCGCGACC ] consensusID : consensus_7638#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 547 fasta sequence [TAGTTTACGCATTCCTTTCGGAACCTTCTTCCTTCGGATGACCATCTGCGAGAGCCGCAAGATTTCGTAGTGGGAAGAATATTGCACCAACACGCAAAGCAACTGTGCCACCGGGACATAACTGTGTAGGAACCGCCGCGCACGAACAGCAGTGGCCCAACACTCGCTAGACTGCGATATGGCTGAAACGGTGACGGATGCACCCTCGGAACCAGCCCATCCGGGGATGAGCCTGCAGGAAGGCACGGATGCTGGGATGCTTGGAGCGGCCGGCACAAC-AAACACCATCATCACCAGTACCACCACCACCACCGACGCGGAGTTGCTGCCCGACGGCGGTAACTGCCATACGCCGGCGGAAGGGTTCATCTGCGGCGTGGTGGAAGGGTTCTACGGCCGCCCGTGGACAACGGAGCAGCGGAAGGATCTGTTCCGCAAGCTGAAGCAGTGGGGCATGGACGCGTACATCTACGCACCGAAGGACGACTACAAGCACCGGGCGTACTGGCGCGAGCTGTACACGGTGGAGGAGGCGGACCACCTGACC] [+] EMBL AGA285164 [TAGTTTACGCATTCCTTTCGGAACCTTCTTCCTTCGGATGACCATCTGCGAGAGCCGCAAGATTTCGTAGTGGGAAGAATATTGCACCAACACGCAAAGCAACTGTGCCACCGGGACATAACTGTGTAGGAACCGCCGCGCACGAACAGCAGTGGCCCAACACTCGCTAGACTGCGATATGGCTGAAACGGTGACGGATGCACCCTCGGAACCAGCCCATCCGGGGATGAGCCTGCAGGAAGGCACGGATGCTGGGATGCTTGGAGCGGCCGGCACAAC AAACACCATCATCACCAGTATCACCACCACCACCGACGCGGAGTTGCTGCCCGACGGCGGTAACTGCCATACGCCGGCGGAAGGGTTCATCTGCGGCGTGG ] [+] EMBL AGA282959 [ CCATCTGCGAGAGCSGCAAGATTTCGTAGTGGGAAGAATATTGCACCAACACGCAAAGCAACTGTGCCACCGGGACATAACTGTGTAGGAACCGCCGCGCACGAACAGCAGTGGCCCAACACTCGCTAGACTGCGATATGGCTGAAACGGTGACGGATGCACCCTCGGAACCAGCCCATCCGGGGATGAGCCTGCAGGAAGGCACGGATGCTGGGATGCTTGGAGCGGCCGGCACAAC AAACACCATCATCACCAGTACCACCACCACCACCGACGCGGAGTTGCTGCCCGACGGCGGTAACTGCCATACGCCGGCGGAAGGGTTCATCTGCGGCGTGGTGGAAGGGTTCTACGGCCGCCCGTGGACAACGGAGCAGCGGAAGGATCTGTTCCGCAAGCTGAAGCAGTGGGGCATGGACGCGTACATCTACGCACCGAAGGACGACTACAAGCACCGGGCGTACTGGCGCGAGCTGTACACGGTGGAGGAGGCGGACCAC ] [-] EMBL AGA281351 [ CATCTGCGAGAGCCGCAAGATTTCGTAGTGGGAAGAATATTGCACCAACACGCAAAGCAACTGTGCCACCGGGACATAACTGTGTAGGAACCGCCGCGCACGAACAGCAGTGGCCCAACACTCGCTAGACTGCGATATGGCTGAAACGGTGACGGATGCACCCTCGGAACCAGCCCATCCGGGGATGAGCCTGCAGGAAGGCACGGATGCTGGGATGCTTGGAGCGGCCGGCACAAC AAACACCATCATCACCAGTACCACCACCACCACCGACGCGGAGTTGCTGCCCGACGGCGGTAACTGCCATACGCCGGCGGAAGGGTTCATCTGCGGCGTGGTGGAAGGGTTCTACGGCCGCCCGTGGACAACGGAGCAGCGGAAGGATCTGTTCCGCAAGCTGAAGCAGTGGGGCATGGACGCGTACATCTACGCACCGAAGGACGACTACAAGCACCGGGCGTACTGGCGCGAGCTGTACACGGTGGAGGAGGCGGACCACCTGAC ] [-] EMBL AGA283871 [ CACGGATGCTGGGATGCTTGGAGCGCCCGGCACAACAAAACACCATCATCACCAGTACCACCACCACCACCGACGCGGAGTTGCTGCCCGACGGCGGTAACTGCCATACGCCGGCGGAAGGGTTCATCTGCGGCGTGGTGGAAGGGTTCTACGGCCGCCCGTGGACAACGGAGCAGCGGAAGGATCTGTTCCGCAAGCTGAAGCAGTGGGGCATGGACGCGTACATCTACGCACCGAAGGACGACTACAAGCACCGGGCGTACTGGCGCGAGCTGTACACGGTGGAGGAGGCGGACCACCTGACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7638#0 CCGCCCACGCGTCCGGAAACTCTCTGTGTCAAATGTCAAAAGGCCAGCAGTATTTCGGTG 60 consensus_7638#2 ------------------------------------------------------------ consensus_7638#1 ------------------------------------------------------------ consensus_7638#0 TTTCAGAAAGTTTTTACACAAAAAAGTAGCGTAAAATTACTCGCTTCCCGTTTGGGTGTA 120 consensus_7638#2 ------------------------------------------------------------ consensus_7638#1 ----------------------------------------------------CCGGAAAA 8 consensus_7638#0 ATTTAGTTTCCCCCCATTTTAGGCCCCCCGGTGCGTGCGTGTTTTTAAGCTTGTAGTTTA 180 consensus_7638#2 -----------------------------------------------------TAGTTTA 7 consensus_7638#1 CGTGCACGGCCGACAAGTTTAG---CCACTGCTTCTACGTGTTCTTCGCCGTACGCCTGC 65 * consensus_7638#0 CGCATTCCTTTCGGAACCTTCTTCCT-TCGGATGACCATCTGCGAGAGCCGCAAGATTTC 239 consensus_7638#2 CGCATTCCTTTCGGAACCTTCTTCCT-TCGGATGACCATCTGCGAGAGCCGCAAGATTTC 66 consensus_7638#1 CTCCTGGTTCCCGTGGTTTGCCGAGTGTTGGAT--TCATCTAGCCGACCGGAGTTGTTTG 123 * * * * ** * * * * **** ***** ** * * *** consensus_7638#0 GTAGTGGGAAGAATATTGCACCAACAC-GCAAAGCAACTGTGCCACCGGGACATAACTGT 298 consensus_7638#2 GTAGTGGGAAGAATATTGCACCAACAC-GCAAAGCAACTGTGCCACCGGGACATAACTGT 125 consensus_7638#1 CTGACGGTACGAAAGCGACACAAACACCGCAAAATGCCTT--CCAGTGACCCGTTGCCAC 181 * ** * *** *** ***** ***** ** *** * * * * consensus_7638#0 -GTAGGAA------CCGCCGCGCACGA-ACAGCAGTGGCCCAACACTCGCTAGACTGCGA 350 consensus_7638#2 -GTAGGAA------CCGCCGCGCACGA-ACAGCAGTGGCCCAACACTCGCTAGACTGCGA 177 consensus_7638#1 CGAAGGAAAGTGCCCTGTTCCGCAAGATACTGAAATGCTACGAAATGAAACAATACAAAA 241 * ***** * * **** ** ** * * ** * * * * * consensus_7638#0 TATGGCTGAAAC-GGTGACGGATGCACCCTCGGAACC--AGCCCATC-----CGGGGATG 402 consensus_7638#2 TATGGCTGAAAC-GGTGACGGATGCACCCTCGGAACC--AGCCCATC-----CGGGGATG 229 consensus_7638#1 ATGGACTGAAACTGGCGAAGCAGATACTCTCCAACCCGAAGTTCACCGAGCATGGCGAAA 301 * ******* ** ** * * ** *** * ** ** ** * ** ** consensus_7638#0 AGCCTGC-AGGAAGGCACGGATGCTGGGATGCTTGGAGCGGCCGGCACAACAAACACCAT 461 consensus_7638#2 AGCCTGC-AGGAAGGCACGGATGCTGGGATGCTTGGAGCGGCCGGCACAACAAACACCAT 288 consensus_7638#1 CGCTCGCCATGAAGGGTTTGACGCTCAACTGTCT----CGGCCGGAAGGACGAAGCGTAC 357 ** ** * ***** ** *** ** * ******* * ** ** * consensus_7638#0 CATCACCAGTACCACCA-CCACAAAACAATACAAAAATGGACTGAAACTGGCGAAGCAGA 520 consensus_7638#2 CATCACCAGTACCACCA-CCACCAC-CGACGCGGAGTTGCTGCCCGACGGCGGTAACTGC 346 consensus_7638#1 GATCACGTTCGCCGCGGGCTGCGGAACGATCTGAAGTCGCACGTGTGCTGGC---ACGTG 414 ***** ** * * * * * * * * * * consensus_7638#0 TACTCTCCAACCCGAAG-TTCACCGA---GCATGGCGAAA--------CGCTCGCC-ATG 567 consensus_7638#2 CATACGCCGGCGGAAGGGTTCATCTGCG-GCGTGGTGGAAGGGTTCTACGGCCGCCCGTG 405 consensus_7638#1 TACGGGCTGCTGCAGCGGTCGGACAAGAAGTACGACGAAG--------CGATCAAGTGCT 466 * * * * * * * * * ** * consensus_7638#0 AAGGGTTTGACGCTCAACTGTCTCGGCCGGAAGGACGAAGC------GTACGATCACGTT 621 consensus_7638#2 GACAACGGAGCAGCGGAAGGATCTGTTCCGCAAGCTGAAGCAGTGGGGCATGGACGCGTA 465 consensus_7638#1 ACCGGAACG-CGCTCAAGTGGGAGAAGGACAACATTCAGATCCT---GCGCGATCTGTCG 522 * * * * * * * * consensus_7638#0 CG-CTGCGGG--CTGCGGAACGATCTGAAAG--TCGCACGTGTGCTGGCAC---TTGTAC 673 consensus_7638#2 CATCTACGCA--CCGAAGGACGA-CTACAAG--CACCGGGCGTACTGGCGCGAGCTGTAC 520 consensus_7638#1 CTGCTGCAGATACAGATGCGCGACCTGGAGGGGTACCGGGAAACGCGGCACCAGCTGTTC 582 * ** * * * * *** ** * * * * *** * *** * consensus_7638#0 GGGCTGCT-------------------------------------------- 681 consensus_7638#2 ACGGTGGAGGAGGCGGACCACCTGACC------------------------- 547 consensus_7638#1 AAGCTGCGGCCGTCCCAGCACGCCAGCTGGATTGGCTTTGCGATGAGTTACC 634 * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||