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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1458 fasta sequence
[TTCGTTATGTATAATTTCTACTTCCTCCA-CATCAAACCATCGATCCTTCAACAT-CCAT-CCCACCGGCCAATTCATCCGCCGGTGGATTGACCAGTGCGGCCGGAATATTTAGCGTCTTACCCGGGCACAGCGCCTCAAACTGATGCTTTAGACTCTCCAGCTCAAAGTTACAGGTGGCCAGGGCGGTCCGCAATTCGCACAGCAGCACCATATCCGATCGCAGCTCATTGAACGCCACAAAAATATCTTCTACCGGGGGTGGATTCGGGTCCACCTTGAACTCCTGCAGTGCCTGCTCCAGCGCCTTCGCTTTCTTCTGGCCAACGTTGGCGGGCAGTTTCATCTTTTGCGATCTCAACGATACACCCGTGCCTCGCAGATCCGTAAACTTAATGCCAGCGCTCTCCACTGCGCTTACCACCGAATCCACCTTGGACGTGCGTGGCTGCTGTTGGATCTTTTTCTTGTTCAGCTTTTTGTCCTGCTTTTTGTGCGATGTGTTCTGGGTACCGTGGGGCTGCGTTTGGCTATGATGCTGCTGCTGCTCCTTCTGATGGTGTTCCGTCTGTTGCTGGTCGGCCTGCGAGAAGAGCTTCTGCAGAACTTGCGTCTTGCGCTCGCGCTCCTTCTTGCGTGCTTCGATCTTCTTCAGCTCGTTCAGCAACTGTTGCTCCTCCTCCACCTGCTTCGATGTGCGGTCGAACAGCTTCTTCAGCTGCTCCTTTCGGCGCCGCT-CGTGCTCCGCATCGAACACGTACACCTTCTTCTCGACACCGCCCTGCCCGTTGGCGTTGCGTACTTTGTTCAATATGCCAACCACCTCGTAGTAGCGCTCTTTCAGATCTTCCACCGATTTGATGCCATAGTTTGCCCGCTCCCAACGGTCACACATGATGATGAACCGAACGTCGAACCGTTTGGCCAGATCGAACAGATGGTCCGTCTGCTGTTTGGTACA-TTCGTTGTCTTGAAAAACGCATTGTAATCGTTCAGCGTGTAGGTGGGAATGTCCAGCTGCTTGTTAAACCGGGCGAATGGATACT-CTTCGGCTCGTCCGTCACGCGCTTCCAGTGGTGAAAGACGGCCCCATCAGTACGGGCCGGATTTACGAACGGTGCCCACTCCCAGCGGCGCACCTTTTTCATGCCCAATCGGGCCTTCGTCTTCTTGTAGCCGGAAACGGTATCCGTTGGCA-GAAGCG-GTGGTGCAT-CTTTGT-TGTCATTGTACAGCAGAGCAAACACCTCCCGGTGCATACCTTCAGG-ACGTTTGGCCACAATTTTCCTTTCGACAGTGCGTTTCTTAGAGTTGAGCAGTGCTTCCTTCGTTAACTCCGGCGTCACCGGACGCTCCAGC-TCAAGAATATCCGGCACATCAGCCATGATGTGAGAAAATGTTTAGAAATCTAATAAAATTTACAATCAATATCGTTCACTTTACAAGTTCCTCGTGCCGNATCTG]
[+] EMBL CNS08GZS [TTCGTTATGTATAATTTCTACTTCCTCCA CATCAAACCATCGATCCTTCAACAT CCAT CCCACCGGCCAATTCATCCGCCGGTGGATTGACCAGTGCGGCCGGAATATTTAGCGTCTTACCCGGGCACAGCGCCTCAAACTGATGCTTTAGACTCTCCAGCTCAAAGTTACAGGTGGCCAGGGCGGTCCGCAATTCGCACAGCAGCACCATATCCGATCGCAGCTCATTGAACGCCACAAAAATATCTTCTACCGGGGGTGGATTCGGGTCCACCTTGAACTCCTGCAGTGCCTGCTCCAGCGCCTTCGCTTTCTTCTGGCCAACGTTGGCGGGCAGTTTCATCTTTTGCGATCTCAACGATACACCCGTGCCTCGCAGATCCGTAAACTTAATGCCAGCGCTCTCCACTGCGCTTACCACCGAATCCACCTTGGACGTGCGTGGCTGCTGTTGGATCTTTTTCTTGTTCAGCTTTTTGTCCTGCTTTTTGTGCGATGTGTTCTGGGTACCGTGGGGCTGCGTTTGGCTATGATGCTGCTGCTGCTCCTTCTGATGGTGTTCCGTCTGTTGCTGGTCGGCCTGCGAGAAGAGCTTCTGCAGAACTTGCGTCTTGCGCTCGCGCTCCTTCTTGCGTGCTTCGATCTTCTTCAGCTCGTTCAGCAACTGTTGCTCCTCCTCCACCTGCTTCGATGTGCGGTCGAACAGCTTCTTCAGCTGCTCCTTTCGGCGCCGCT CGTGCTCCGCATCGAACACGTACACCTTCTTCTCGACACCGCCCTGCCCGTTGGCGTTGCGTACTTTGTTCAATATGCCAACCACCTCGTAGTAGCGCTCTTTCAGATCTTCCACCGATTTGATGCCATAGTTTGCCCGCTCCCAACGGTCACACATGATGATGAACCGAACGTCGAACCGTTTGGCCAGAACGAACAGA ]
[-] EMBL BM614550 [ TCGTTATGTATAATTTCTACTTCCTCCACCATCAAACCATCGATCCTTCAACATCCCATCCCCACCGGCCGATTCATCCGCCGGTGGATTGACCAATGCGGCCGGAATATTTAGCGTCTTACCCGGGCACAGCGCCTCATACTGATGCTTTAGACTCTCCAGCTCAAAGTTACAGGTGGCCAGTGCGGTTCGCAATTCGCACAGCAGCACCATATCCGATCGCAGCTCATTGAACGCCACACAGATATCTTCTACCGGGGGTGGATTCGGGTCCACCTTGAACTCCTGCAGTGCCTGCTCGAGTGCCTTCGCTTTCTTCTGGCCAACGTTGGCGGGCAGTTTCATCTTTTGCGATCTCAACGACACACCCGTACCACGCAGATCCGTAAACTTAATGCCAGCGCTCTCCACTGCGCTTACCACCGAATCCACCTTGGACGTGCGTGGCTGCTGTTGGATCTTTTTCTTGTTCAGCTTTTTGTCCTGCTTTTTGTGCGATGTGTTCTGGGTACCGTGGGGCTGCGTTTGGCTATGATGCTGCTGCTGCTCCTTCTGATGGTGcgg ]
[+] EMBL CNS08MG8 [ ctATCGCAGCTCATTTAACGCCACAAAAATATCTTCTACCGGGGGTGGATTCGGGTCCACCTTGAACTCCTGCAGTTCCTGCTCCAGCGCCTTCGCTTTCTTCTGGCCAACGTTGGCGGGCAGTTTCATCTTTTGCGATCTCAACGATACACCCGTGCCTCGCAGATCCGTAAACTTAATGCCAGCGCTCTCCACTGCGCTTACCACCGAATCCACCTTGGACGTGCGTGGCTGCTGTTGGATCTTTTTCTTGTTCAGCTTTTTGTC ]
[-] EMBL CNS08MG7 [ AGCTGCTCCTTTCGGCGCCGCTCCGTG TCCGCATCGAAAACGTACACCTTCTTCTCGACACCGCCCTGCCCGTTGGCGTTGCGTACTTTGTTCAATATGCCAACCACCTCGTAGTAGCGCTCTTTCAGATCTTCCACCGATTTGATGCCATAGTTTGCCCGCTCCCAACGGTCACACATGATGATGAACCGAACGTCGAACCGTTTGGCCAGATCGAACAGATGGTCCGTCTGCTGTTTGGTACA TTCGTTGTCTTGAAAAACGCATTGTAATCGTTCAGCGTGTAGGTGGGAATGTCCAGCTGCTTGTTAAACCGGGCGAATGGATACT CTTCGGCTCGTCCGTCACGCGCTTCCAGTGGTGAAAGACGGCCCCATCAGTACGGGCCGGATTTACGAACGGTGCCCACTCCCAGCGGCGCACCTTTTTCATGCCCAATCGGGCCTTCGTCTTCTTGTAGCCGGAAACGGTATCCGTTGGCA GAAGCG GTGGTGCAT CTTTGT TGTCATTGTACAGCAGAGCAAACACCTCCCGGTGCATACCTTCAGG ACGTTTGGCCACAATTTTCCTTTCGACAGTGCGTTTCTTAGAGTTGAGCAGTGCTTCCTTCGTTAACTCCGGCGTCACCGG ]
[-] EMBL BM600715 [ TGCTCCTTTCGGCGCCGCT CGTGCTCCGCATCGAACACGTACACCTTCTTCTCGACACCGCCCTGCCCGTTGGCGTTGCGTACTTTGTTCAATATGCCCACCACCTCGTAGTAGCGCTCCTTCAGATCTTCCACCGATTTGATGCCATAGTTTGCCCGCTCCCAACGGTCACACATGATGATGAACCGAACGTCGAACCGTTTGGCCAGATCGAACAGATGGTCCGTCTGCTGTTTGGTCCACTTCGTTGTCTTGAGATGCGCATTGTAATCGTTCAGCGTGTAGGTGGGAATGTCCAGCTGCTTGTTAAACCGGGCGAATGGATACTCCTTCGGCTCGTCCGTCACGCGCTTCCAGTGGTGAAAGACGGCCCCATCAGTACGGGCCGGATTAACGAACGGTGCCCACTCCCAGCGGCGCACCTTTTTCATGCCCAATCGGGCCTTCGTCTTCTTGTAGCCGGAAACGGTATCCGTTGGCA GAAGCG GTGGTGCAT CTTTGT TGTCATTGTACAGCAGAGCAAACACCTCCCGGTGCATACCTTCAGG ACGTTTGGCCACAATTTTCCTTTCGACAGTGCGTTTCTTAGAGTTGAGCAGTGCTTCCTTCGTTAACTCCGGCGTCACCGGACGCTCCAGC TCAAGAATATCCGG ]
[-] EMBL BX619815 [ TGGCAGGAAGCGTGTGGTGCATGCTTTGTCTGTCATTGTACAGCAGAGCAAACACCTCCCGGTGCATACCTTCAGGNACGTTTGGCCACAATTTTCCTTTCGACAGTGCGTTTCTTAGAGTTGAGCAGTGCTTCCTTCGTTAACTCCGGCGTCACCGGACGCTCCAGCNTCAAGAATATCCCGCACATCAGCCATGATGTGAGAAAATGTTTAGAAATCTAATAAAATTTACAATCAATATCGTTCACTTTACAAGTTCCTCGTGCCGNATCTG]
consensusID : consensus_7639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence
[TGATGAACCCGAACGTNGAACCCGTTTGGCCAGATCGGAGCAGATGGTCCGTGCTGCTGTTTGGTCCCACTTAGNTGTCTTGAGATGCAGCATTGTAATCGTTCAGCTGTGTAGGCTGCGGAATGTCCAGTCTGACTTTGTTAAAACCGGGTCGAATTGGATACCTACCATGTGCAGGCATCGATCCGTCATCGACGCCTCTCCAGATGGCTGCAAAAGTACGGCGCCACAGTCAGCTACGGGTCCGGATTTAACGACACGGTGCCCACTCCCAGCGGCGCACCTTTTTCANGCCCCAATCGGGCCTTCGTCTTCTTGTATGCCGGATATACGGTATCCGTTGGCAGAAANACGGTGGTCACATCNTCTATGATTGTCAGTTGTATCAGCCAGAGCTAGAACATCCTCCCGGATGCAGTACCTTCAGGACGTTTAGNACACACAATTNTCCTGNCGACAGTGCGTTTCTAAGAGGTGAGCAGTGCTTCNTTNGTGNACTCCGGCGTCACCGGACGCTCCAGCTCAAGAATATGCCGCACATCAGCCATGATGTGAGAGAATGTTTAGAAATTCAATNAATTTACAATAAATATGCGCTTCACTNTGACATGCTTAANCCCTG]
[-] EMBL AL932955 [TGATGAACCCGAACGTNGAACCCGTTTGGCCAGATCGGAGCAGATGGTCCGTGCTGCTGTTTGGTCCCACTTAGNTGTCTTGAGATGCAGCATTGTAATCGTTCAGCTGTGTAGGCTGCGGAATGTCCAGTCTGACTTTGTTAAAACCGGGTCGAATTGGATACCTACCATGTGCAGGCATCGATCCGTCATCGACGCCTCTCCAGATGGCTGCAAAAGTACGGCGCCACAGTCAGCTACGGGTCCGGATTTAACGACACGGTGCCCACTCCCAGCGGCGCACCTTTTTCANGCCCCAATCGGGCCTTCGTCTTCTTGTATGCCGGATATACGGTATCCGTTGGCAGAAANACGGTGGTCACATCNTCTATGATTGTCAGTTGTATCAGCCAGAGCTAGAACATCCTCCCGGATGCAGTACCTTCAGGACGTTTAGNACACACAATTNTCCTGNCGACAGTGCGTTTCTAAGAGGTGAGCAGTGCTTCNTTNGTGNACTCCGGCGTCACCGGACGCTCCAGCTCAAGAATATGCCGCACATCAGCCATGATGTGAGAGAATGTTTAGAAATTCAATNAATTTACAATAAATATGCGCTTCACTNTGACATGCTTAANCCCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7639#0 TTCGTTATGTATAATTTCTACTTCCTCCACATCAAACCATCGATCCTTCAACATCCATCC 60
consensus_7639#1 ------------------------------------------------------------
consensus_7639#0 CACCGGCCAATTCATCCGCCGGTGGATTGACCAGTGCGGCCGGAATATTTAGCGTCTTAC 120
consensus_7639#1 ------------------------------------------------------------
consensus_7639#0 CCGGGCACAGCGCCTCAAACTGATGCTTTAGACTCTCCAGCTCAAAGTTACAGGTGGCCA 180
consensus_7639#1 ------------------------------------------------------------
consensus_7639#0 GGGCGGTCCGCAATTCGCACAGCAGCACCATATCCGATCGCAGCTCATTGAACGCCACAA 240
consensus_7639#1 ------------------------------------------------------------
consensus_7639#0 AAATATCTTCTACCGGGGGTGGATTCGGGTCCACCTTGAACTCCTGCAGTGCCTGCTCCA 300
consensus_7639#1 ------------------------------------------------------------
consensus_7639#0 GCGCCTTCGCTTTCTTCTGGCCAACGTTGGCGGGCAGTTTCATCTTTTGCGATCTCAACG 360
consensus_7639#1 ------------------------------------------------------------
consensus_7639#0 ATACACCCGTGCCTCGCAGATCCGTAAACTTAATGCCAGCGCTCTCCACTGCGCTTACCA 420
consensus_7639#1 ------------------------------------------------------------
consensus_7639#0 CCGAATCCACCTTGGACGTGCGTGGCTGCTGTTGGATCTTTTTCTTGTTCAGCTTTTTGT 480
consensus_7639#1 ------------------------------------------------------------
consensus_7639#0 CCTGCTTTTTGTGCGATGTGTTCTGGGTACCGTGGGGCTGCGTTTGGCTATGATGCTGCT 540
consensus_7639#1 ------------------------------------------------------------
consensus_7639#0 GCTGCTCCTTCTGATGGTGTTCCGTCTGTTGCTGGTCGGCCTGCGAGAAGAGCTTCTGCA 600
consensus_7639#1 ------------------------------------------------------------
consensus_7639#0 GAACTTGCGTCTTGCGCTCGCGCTCCTTCTTGCGTGCTTCGATCTTCTTCAGCTCGTTCA 660
consensus_7639#1 ------------------------------------------------------------
consensus_7639#0 GCAACTGTTGCTCCTCCTCCACCTGCTTCGATGTGCGGTCGAACAGCTTCTTCAGCTGCT 720
consensus_7639#1 ------------------------------------------------------------
consensus_7639#0 CCTTTCGGCGCCGCTCGTGCTCCGCATCGAACACGTACACCTTCTTCTCGACACCGCCCT 780
consensus_7639#1 ------------------------------------------------------------
consensus_7639#0 GCCCGTTGGCGTTGCGTACTTTGTTCAATATGCCAACCACCTCGTAGTAGCGCTCTTTCA 840
consensus_7639#1 ------------------------------------------------------------
consensus_7639#0 GATCTTCCACCGATTTGATGCCATAGTTTGCCCGCTCCCAACGGTCACACATGATGATGA 900
consensus_7639#1 ------------------------------------------------------TGATGA 6
******
consensus_7639#0 ACC-GAACGTCGAACC-GTTTGGCCAGATCGAA-CAGATGGTCCGT-CTGCTGTTTGGTA 956
consensus_7639#1 ACCCGAACGTNGAACCCGTTTGGCCAGATCGGAGCAGATGGTCCGTGCTGCTGTTTGGTC 66
*** ****** ***** ************** * ************ ************
consensus_7639#0 CA--TTCGTTGTCTTGAAAAAC-GCATTGTAATCGTTCAGC-GTGTAGGTGG--GAATGT 1010
consensus_7639#1 CCACTTAGNTGTCTTGAGATGCAGCATTGTAATCGTTCAGCTGTGTAGGCTGCGGAATGT 126
* ** * ******** * * ****************** ******* * ******
consensus_7639#0 CCAG-CTG--CTTGTTAAA-CCGGG-CGAAT-GGATACT-------------CTTCGGCT 1051
consensus_7639#1 CCAGTCTGACTTTGTTAAAACCGGGTCGAATTGGATACCTACCATGTGCAGGCATCGATC 186
**** *** ******** ***** ***** ****** * ***
consensus_7639#0 CGTCCGTCACGCGCTTCCAG-----TGGTGAAAGACGGCCCCA---TCAG-TACGGG-CC 1101
consensus_7639#1 CGTCATCGACGCCTCTCCAGATGGCTGCAAAAGTACGGCGCCACAGTCAGCTACGGGTCC 246
**** **** ***** ** ** ***** *** **** ****** **
consensus_7639#0 GGATTTA-CGA-ACGGTGCCCACTCCCAGCGGCGCACCTTTTTCATGCCC-AATCGGGCC 1158
consensus_7639#1 GGATTTAACGACACGGTGCCCACTCCCAGCGGCGCACCTTTTTCANGCCCCAATCGGGCC 306
******* *** ********************************* **** *********
consensus_7639#0 TTCGTCTTCTTGTA-GCCGGAAA--CGGTATCCGTTGGCAGAAGC--GGTGGT-GCATCT 1212
consensus_7639#1 TTCGTCTTCTTGTATGCCGGATATACGGTATCCGTTGGCAGAAANACGGTGGTCACATCN 366
************** ****** * ****************** ****** ****
consensus_7639#0 TT----GTTGTCA-TTGTA-CAGC-AGAGC--AAACA-CCTCCCGG-TGCA-TACCTTCA 1260
consensus_7639#1 TCTATGATTGTCAGTTGTATCAGCCAGAGCTAGAACATCCTCCCGGATGCAGTACCTTCA 426
* ****** ***** **** ***** **** ******** **** ********
consensus_7639#0 GGACGTTTGGC---CACAATTTTCCTTTCGACAGTGCGTTTCTTAGAGTTGAGCAGTGCT 1317
consensus_7639#1 GGACGTTTAGNACACACAATTNTCCTGNCGACAGTGCGTTTCTAAGAGGTGAGCAGTGCT 486
******** * ******* **** *************** **** ***********
consensus_7639#0 TCCTTCGTTAACTCCGGCGTCACCGGACGCTCCAGCTCAAGAATATCCGGCACATCAGCC 1377
consensus_7639#1 TCNTTNGTGNACTCCGGCGTCACCGGACGCTCCAGCTCAAGAATATGCCGCACATCAGCC 546
** ** ** ************************************ * ***********
consensus_7639#0 ATGATGTGAGAAAATGTTTAGAAATCTAATAAAATTTACAATCAATATCGTTCACTTTAC 1437
consensus_7639#1 ATGATGTGAGAGAATGTTTAGAAATTCAATNAA-TTTACAATAAATATGCGCTTCACTNT 605
*********** ************* *** ** ******** ***** * *
consensus_7639#0 AAGTTCCTCGTGCCGNATCTG 1458
consensus_7639#1 GACATGCTTAANCCCTG---- 622
* * ** **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||