These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7640#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 959 fasta sequence [CTTAACACAACAAAACAAATCTTTTTCTACCGATTTCGTTTATCCATTTTCTCTGCAAGAAAGTTAATTTTGTGCAA-AAAAGTATACGATTGAAACCCACACCAAAACGTAATATGTCCCTGCATAGCGATACATCCGAAGATTTATCGCGCAACTCTGCCGAGATGGAACTGCTGCCCCCGATCAACTTTGCCGATGACAAATATCCGTACTGCATCGTCTGGACACCGATCCCGGTGCTAACCTGGTTCTTCCCGTTCATCGGACACATGGGCATCGCCATGTCGAACGGCGTGATACGCGACTTTGCCGGGCCGTACTTCGTGTCGGAGGACAATATGGGGTTTGGCCGGCCGACACGCTACCTGCGGCTGCATCCGGCGAACGCGTTCGGCGGCACCCAGAACTGGGACGAATCGGTAATCAAAGCGTCGGCCACGTACGGTGCGCGAATGCACAACCTGTTTTGCGACAACTGCCATTCGCACGTGGGCATGGCGCTGGCCCTGATGCGCTACAAAGAGTACACCAACTGGAACATGGTGGTGCTGGCGTTTTGGATGTTTTTCAGGGGCAAGTACGTCGGGCTGCGCGGTTTCATCAAGACTTGGCTGCCGTTCCTAATTATACTGACTATTTGCGCACTGGTTGCGATGTACTCTAAGTGGACTATCTAAGCAGGGTGGCCT-GGGGGCGACACACCGGGGTTTCGGATGGACGGGGACGATCGTATGCGCCGATTATTATTAAATTTCATTCCTTTAGGACCGTCGGTGCTCCTTGGGGGACACTATGGCGCAGCA-GGAAGCCGACAACTTACTTCATTAGGCATAAAGATGTGTAACTGAATGTGTGTAATATGAACGAATATATCTATAAACCCATCTATGGACGCCTGCGACCACGCAGAAGAGCTGTAATTTATTAACAAAAAAAAAAAAAAAAAAAAAAGGCCCATG] [+] EMBL CNS09DDB [ TTAACACAACAAAACAAATCTTTTTCTACCGATTTCGTTTATCCATTTTCTCTGCAAGAAAGTTAATTTTGTGCAA AAAAGTATACGATTGAAACCCACACCAAAACGTAATATGTCCCTGCATAGCGATACATCCGAAGATTTATCGCGCAACTCTGCCGAGATGGAACTGCTGCCCCCGATCAACTTTGCCGATGACAAATATCCGTACTGCATCGTCTGGACACCGATCCCGGTGCTAACCTGGTTCTTCCCGTTCATCGGACACATGGGCATCGCCATGTCGAACGGCGTGATACGCGACTTTGCCGGGCCGTACTTCGTGTCGGAGGACAATATGGGGTTTGGCCGGCCGACACGCTACCTGCGGCTGCATCCGGCGAACGCGTTCGGCGGCACCCAGAACTGGGACGAATCGGTAATCAAAGCGTCGGCCACGTACGGTGCGCGAATGCACAACCTGTTTTGCGACAACTGCCATTCGCACGTGGGCATGGCGCTGGCCCTGATGCGCTACAAAGAGTACACCAACTGGAACATGGTGGTGCTGGCGTTTTGGATGTTTTTCAGGGGCAAGTACGTCGGGCTGCGCGGTTTCATCAAGACTTGGCTGCCGTTCCTAATTATACTGACTATTTGCGCACTGGTTGCGATGTACTCTAAGTGGACTATCTAAGCAGGGTGGCCT GGGGGCGACACACCGGGGTTTCGGATGGACGGGGACGATCGTATGCGCCGATTATTATTAAATTTCATTCCTTTAGGACCGTCGGTGCTCCTTGGGGGACACTATGGCGCA CAGGGAAGCCGACAACTTACTTCATTAGGCATAAAGATGTGT ACTGAATGTGTGTAATATGAACGAATATATCTATAAACCCATCTATGGACGCCTGCGACCACGCAGAAGAGCTGTAATTTATTAACAAAAAAAAAAAAAAAAAAAAAAGGCCCATG] [-] EMBL CNS09DDC [caaacCACAACAAAACAAATCTTTTTCTACCGATTTCGTTTATCCATTTTCTCTGCAAGAAAGTTAATTTTGTGCAACAAAAGTATACGATTGAAACCCACACCAAAACGTAATATGTCCCTGCATAGCGATACATCCGAAGATTTATCGCGCAAATCTGCCGAGATGGAACTGCTGCCCCCGATCAACTTTGCCGATGACAAATATCCGAACTGCATCGTCTGGACACCGATCCCGGTGCTAACCTGGTTCTTCCCGTTCATCGGAAACATGGGCATCGCCATGTCGAACGGCGTGATACGCGACTTTGCCGGGCCGTACTTCGTGTCGGAGGACAATATGGGGTTTGGCCGGCCGACACGCTA CTGCGGCTGCATCCGGCGAACGCGTTCGGCGGCACCCAGAACTGGGACGAATCGGTAATCAAAGCGTCGGCCACGTACGGTGCGCGAATGCACAACCTGTTTTGCGACAACTGCCATTCGCACGTGGGCATGGCGCTGGCCCTGATGCGCTACAAAGAGTACACCAACTGGAACATGGTGGTGCTGGCGTTTTGGATGTTTTTCAGGGGCAAGTACGTCGGG TGCGCGGTTTCATCAAGACTTGGCTGCCGTTCCTAATTATACTGACTATTTGCGCACTGGTTGCGATGTACTCTAAGTGGACTATCTAAGCAGGGTGGCCT GGGGGCGACACACCGGGGTTTCGGATGGACGGGGACGATCGTATGCGCCGATTATTATTAAATTTCATTCCTTTAGGACCGTCGGTGCTCCTTGGGGGACACTATGGCGCAGCA GGAAGCCGACAACTTACTTCATTAGGCATAAAGATGTGTAACTGAATGTGTGTAATATGAACGAATATATCTATAAACCCATCTATGGACGCCTGCGACCACGCAGAAGAGCTGTAATTT ] [+] EMBL CNS09G87 [ CAAAACAAATCTTTTTCTACCGATTTCGTTTATCCATTTTCTCTGCAAGAAAGTTAATTTTGTGCAA AAAAGTATACGATTGAAACCCACACCAAAACGTAATATGTCCCTGCATAGCGATACATCCGAAGATTTATCGCGCAACTCTGCCGAGATGGAACTGCTGCCCCCGATCAACTTTGCCGATGACAAATATCCGTACTGCATCGTCTGGACACCGATCCCGGTGCTAACCTGGTTCTTCCCGTTCATCGGACACATGGGCATCG CATGTCGAACGGCGTGATACGCGACTTTGCCGGGCCGTACTTCGTGTCGGAGGACAATATGGGGTTTGGCCGGCCGACACGCTACCTGCGGCTGCATCCGGCGAACGCGTTCGGCGGCACCCAGAACTGGGACGAATCGGTAATCAAAGCGTCGGCCACGTACGGTGCGCGAATGCACAACCTGTTTTGCGACAACTGCCATTCGCACGTGGGCATGGCGCTGGCCCTGATGCGCTACAAAGAGTACACCAACTGGAACATGGTGGTGCTGGCGTTTTGGATGTTTTTCAGGGGCAAGTACGTCGGGCTGCGCGGTTTCATCAAGACTTGGCTGCCGTTCCTAATTATACTGACTATTTGCGCACTGGTTGCGATGTACTCTAAGTGGACTATCTAAGCAGGGTGGCCTGGGGGGCGACACACCGGGGTTTCGGATGGACGGGGACGATCGTATGCGCC ] [-] EMBL CNS09G88 [ GTTTTGGATGTTTTTCAGGGGGAAGTACGTCGGG TGCGCGGTTTCATCAAAACTTGGCTGCCGTTCCTAATTATACTGACTATTTGCGAACTGGTTGCGATGTACTCTAAGTGGACTATCTAAACAGGGTGGCCT GGGGGCGACACACCGGGGTTTCGGATGGACGGGGACGATCGTATGCGCCGATTATTATTAAATTTCATTCCTTTAGGACCGTCGGTGCTCCTTGGGGGACACTATGGCGCAGCA GGAAGCCGACCACTTACTTCATTAGGCATAAAGATGTGTAACTGAATTTGTTTAATATGAACGAATATATCTATAAACCCATC ] [+] EMBL BX612140 [ TCATTCCTTTAGGAACGTCGGTGCTCCTTGGGGGAAACTATGGCGCAGCA GGAAGCCGAAAACTTACTTCATTAGGCATAAAGAAGTGTAACTGAATGTGTGTAATATGAACGAATATATCTATAAACCCATCTATGGACGCCGGCGACCACGCAGAAGAGCTGTA ] consensusID : consensus_7640#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 954 fasta sequence [CAGAATCGGCACAGGATTTCTCTGCAAGAAAGTTAATTTTGTGCAACAAAAGTATACGATTGAAACCCACACCAAAACGTAATATGTCCCTGCATAGCGATACATCCGAAGATTTATCGCGCAACTCTGCCGAGATGGAACTGCTGCCCCCGATCAACTTTGCCGATGACAAATATCCGTACTGCATCGTCTGGACACCGATCCCGGTGCTAACCTGGTTCTTCCCGTTCATCGGACACATGGGCATCGCCATGTCGAACGGCGTGATACGCGACTTTGCCGGGCCGTACTTCGTGTCGGAGGACAATATGGGGTTTGGCCGGCCGACACGCTACCTGCGGCTGCATCCGGCGAACGCGTTCGGCGGCACCCAGAACTGGGACGAATCGGTAATCAAAGCGTCGGCCACGTACGGTGCGCGAATGCACAACCTGTTTTGCGACAACTGCCATTCGCACGTGGGCATGGCGCTGGCCCTGATGCGCTACAAAGAGTACACCAACTGGAACATGGTGGTGCTGGCGTTTTGGATGTTTTTCAGGGGCAAGTACGTCGGGCTGCGCGGTTTCATCAAGACTTGGCTGCCGTTCCTAATTATACTGACTATTTGCGCACTGGTTGCGATGTACTCTAAGTGGACTATCTAAGCAGGGGTGGCCTGGGGGCGACANACCGGGGGTTTCGGATGGACGGGGACAGATCGTATGCGCCGATTATTTATTAAATTTGCATTCCTTTAGGGACCGTCGGTGCTCCTTGGGGGNACACTATGGCGCACAGGGAAGCCCGACAAACTTTACTTCATTTAGGCNCTAAAGATTTGTACCTCAATGTGTNGTAATAATGGAACCAATTTTTCTTTAAACCCATCTNTAGACNCTGTGACACACGCAAAAAACTGGTAACTTTTTTACAACAACAAACAGAACACAGGCATTTTGNGCCCAACTTTCC] [+] EMBL BX466428 [CAGAATCGGCACAGGATTTCTCTGCAAGAAAGTTAATTTTGTGCAACAAAAGTATACGATTGAAACCCACACCAAAACGTAATATGTCCCTGCATAGCGATACATCCGAAGATTTATCGCGCAACTCTGCCGAGATGGAACTGCTGCCCCCGATCAACTTTGCCGATGACAAATATCCGTACTGCATCGTCTGGACACCGATCCCGGTGCTAACCTGGTTCTTCCCGTTCATCGGACACATGGGCATCGCCATGTCGAACGGCGTGATACGCGACTTTGCCGGGCCGTACTTCGTGTCGGAGGACAATATGGGGTTTGGCCGGCCGACACGCTACCTGCGGCTGCATCCGGCGAACGCGTTCGGCGGCACCCAGAACTGGGACGAATCGGTAATCAAAGCGTCGGCCACGTACGGTGCGCGAATGCACAACCTGTTTTGCGACAACTGCCATTCGCACGTGGGCATGGCGCTGGCCCTGATGCGCTACAAAGAGTACACCAACTGGAACATGGTGGTGCTGGCGTTTTGGATGTTTTTCAGGGGCAAGTACGTCGGGCTGCGCGGTTTCATCAAGACTTGGCTGCCGTTCCTAATTATACTGACTATTTGCGCACTGGTTGCGATGTACTCTAAGTGGACTATCTAAGCAGGGGTGGCCTGGGGGCGACANACCGGGGGTTTCGGATGGACGGGGACAGATCGTATGCGCCGATTATTTATTAAATTTGCATTCCTTTAGGGACCGTCGGTGCTCCTTGGGGGNACACTATGGCGCACAGGGAAGCCCGACAAACTTTACTTCATTTAGGCNCTAAAGATTTGTACCTCAATGTGTNGTAATAATGGAACCAATTTTTCTTTAAACCCATCTNTAGACNCTGTGACACACGCAAAAAACTGGTAACTTTTTTACAACAACAAACAGAACACAGGCATTTTGNGCCCAACTTTCC] consensusID : consensus_7640#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence [CCCAGGCTTATCTACCGATTCGTTTATCCATTTTCTCTGCAAGAAAGTTAATTTTGTGCAACAAAAGTATACGATTGAAAACCACACCAAAACGTAATATGTCCTGCATAGACAGACNNTCCGAGGATTCATCGCGCAACGTCTGACGANCATGGATACTGATGTCCCCGATCAACTTTGCACGACTGACNAATATGCAGTAGCTGCATCGTATGANAAGCGNTNCCGGANGCATANGCATGTGTACTTGTCCCGGTAACAATCGGATCACCCAGCGAGTGCGTAACACTCGGCTAGTGTTCCAGACCGAGCCGGTGATCNCTCGTNCCTTTTTTGGCCCCGGGGNTCCCGCCACGACCCAGCGGTGCCTGGAATGTATCCCAGCGGAAGCGTATCAGACCCTAGTTGAGGCCCGGTAACATGTNCGCCGGTTCACCGGAAGCGAACGACATAGTNCGTGGGCGTTTTTGTTGACCCAGTTTCCCGGGGTCAGAANACGTNTACCGCTTGCCCGGGGTGTTGGCAATTCCCCAGGGCACGAACCATCGGGGCGGAATNTCC] [+] EMBL AL697518 [CCCAGGCTTATCTACCGATTCGTTTATCCATTTTCTCTGCAAGAAAGTTAATTTTGTGCAACAAAAGTATACGATTGAAAACCACACCAAAACGTAATATGTCCTGCATAGACAGACNNTCCGAGGATTCATCGCGCAACGTCTGACGANCATGGATACTGATGTCCCCGATCAACTTTGCACGACTGACNAATATGCAGTAGCTGCATCGTATGANAAGCGNTNCCGGANGCATANGCATGTGTACTTGTCCCGGTAACAATCGGATCACCCAGCGAGTGCGTAACACTCGGCTAGTGTTCCAGACCGAGCCGGTGATCNCTCGTNCCTTTTTTGGCCCCGGGGNTCCCGCCACGACCCAGCGGTGCCTGGAATGTATCCCAGCGGAAGCGTATCAGACCCTAGTTGAGGCCCGGTAACATGTNCGCCGGTTCACCGGAAGCGAACGACATAGTNCGTGGGCGTTTTTGTTGACCCAGTTTCCCGGGGTCAGAANACGTNTACCGCTTGCCCGGGGTGTTGGCAATTCCCCAGGGCACGAACCATCGGGGCGGAATNTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7640#0 CTTAACACAACAAAACAAATCTTTTTCTACCGATTTCGTTTATCCATTTTCTCTGCAAGA 60 consensus_7640#1 -----------------------------CAGAATCGG--CACAGGATTTCTCTGCAAGA 29 consensus_7640#2 ---------------CCCAGGCTTATCTACCGATTC-GTTTATCCATTTTCTCTGCAAGA 44 * ** * * * ************* consensus_7640#0 AAGTTAATTTTGTGCAA-AAAAGTATACGATTGAAACCCACACCAAAACGTAATATGTCC 119 consensus_7640#1 AAGTTAATTTTGTGCAACAAAAGTATACGATTGAAACCCACACCAAAACGTAATATGTCC 89 consensus_7640#2 AAGTTAATTTTGTGCAACAAAAGTATACGATTGAAAACCACACCAAAACGTAATATGTCC 104 ***************** ****************** *********************** consensus_7640#0 CTGCATAGCGATACAT-CCGAAGATTTATCGCGCAAC-TCTGCCGAG-ATGGA-ACTGCT 175 consensus_7640#1 CTGCATAGCGATACAT-CCGAAGATTTATCGCGCAAC-TCTGCCGAG-ATGGA-ACTGCT 145 consensus_7640#2 -TGCATAGACAGACNNTCCGAGGATTCATCGCGCAACGTCTGACGANCATGGATACTGAT 163 ******* * ** **** **** ********** **** *** ***** **** * consensus_7640#0 GCCCCCGATCAACTTTGC-CGA-TGACAAATATCC-GTA-CTGCATCGTCTGGACACCGA 231 consensus_7640#1 GCCCCCGATCAACTTTGC-CGA-TGACAAATATCC-GTA-CTGCATCGTCTGGACACCGA 201 consensus_7640#2 GTCCCCGATCAACTTTGCACGACTGACNAATATGCAGTAGCTGCATCGTATGANAAGCGN 223 * **************** *** **** ***** * *** ********* ** * ** consensus_7640#0 TCCCGG-TGCTAACCTGGTTCTTCCCGTTCATCGGACACATGGGCATCGCCATGTCGAAC 290 consensus_7640#1 TCCCGG-TGCTAACCTGGTTCTTCCCGTTCATCGGACACATGGGCATCGCCATGTCGAAC 260 consensus_7640#2 TNCCGGANGCATANGCATGTGTACTTGTCC--CGGTAACAATCGGATCACC-CAGCGAGT 280 * **** ** * * * * ** * *** *** * *** ** *** consensus_7640#0 GGCGTGATACGCGACTTTGCCGGGCCGTACTTCGTGTCGGAGGACAATATGGGGTTTGGC 350 consensus_7640#1 GGCGTGATACGCGACTTTGCCGGGCCGTACTTCGTGTCGGAGGACAATATGGGGTTTGGC 320 consensus_7640#2 G-CGTAACACTCGGCTA----GTGTTCCAGACCGAGCCGGTGATCNCT-CGTNCCTTTTT 334 * *** * ** ** ** * * * ** * *** * * * * ** consensus_7640#0 CGGCCGACACGCTACCTGCGGCTGCATCCGGCGAACGCGTTCGGCGGCACCCAGAACTGG 410 consensus_7640#1 CGGCCGACACGCTACCTGCGGCTGCATCCGGCGAACGCGTTCGGCGGCACCCAGAACTGG 380 consensus_7640#2 TGGCCC-CGGGGNTCCCGCCACGAC--CCAGCGG-TGCCTGGAATGTATCCCAG--CGGA 388 **** * * ** ** * * ** *** ** * * ***** * * consensus_7640#0 GACGAATCGGTAATCAAAGCGTCGGCCACGTACGGTGCGCGAATGCACAACCTGTTTTGC 470 consensus_7640#1 GACGAATCGGTAATCAAAGCGTCGGCCACGTACGGTGCGCGAATGCACAACCTGTTTTGC 440 consensus_7640#2 AGCGTATCAG--ACCCTAGTTGAGGCCCGGTAACATGTNCGCCGGTTCACCG------GA 440 ** *** * * * ** **** *** ** ** * ** * * consensus_7640#0 GACAACTGCCATTCGCACGTGGGCATGGCGCTGGCCCTGATGCGCTACAAAGAGTACACC 530 consensus_7640#1 GACAACTGCCATTCGCACGTGGGCATGGCGCTGGCCCTGATGCGCTACAAAGAGTACACC 500 consensus_7640#2 AGCGAACGACATA-GTNCGTGGGCGTTTTTGTTGACCCAGTTTCCCGGGGTCAGAANAC- 498 * * * *** * ******* * * * ** * * ** * ** consensus_7640#0 AACTGGAACATGGTGGTGCTGGCGTTTTGGATGTTTTTCAGGGGCAAGTACGTCGGGCTG 590 consensus_7640#1 AACTGGAACATGGTGGTGCTGGCGTTTTGGATGTTTTTCAGGGGCAAGTACGTCGGGCTG 560 consensus_7640#2 -----GTNTACCGCTTGCCCGGGGTGTTGGCAATTCCCCAGGGCACGAACCATCGGG--G 551 * * * * ** ** **** ** ***** * ***** * consensus_7640#0 CGCGGTTTCATCAAGACTTGGCTGCCGTTCCTAATTATACTGACTATTTGCGCACTGGTT 650 consensus_7640#1 CGCGGTTTCATCAAGACTTGGCTGCCGTTCCTAATTATACTGACTATTTGCGCACTGGTT 620 consensus_7640#2 CGGAATNTCC-------------------------------------------------- 561 ** * ** consensus_7640#0 GCGATGTACTCTAAGTGGACTATCTAAGCAGGG-TGGCCTGGGGGCGACACACCGGGG-T 708 consensus_7640#1 GCGATGTACTCTAAGTGGACTATCTAAGCAGGGGTGGCCTGGGGGCGACANACCGGGGGT 680 consensus_7640#2 ------------------------------------------------------------ consensus_7640#0 TTCGGATGGACGGGGAC-GATCGTATGCGCCGATTATT-ATTAAATTT-CATTCCTTTAG 765 consensus_7640#1 TTCGGATGGACGGGGACAGATCGTATGCGCCGATTATTTATTAAATTTGCATTCCTTTAG 740 consensus_7640#2 ------------------------------------------------------------ consensus_7640#0 G-ACCGTCGGTGCTCCTTGGGGGA-CACTATGGCGCAGCAGGAAGCC-GACAA--CTTAC 820 consensus_7640#1 GGACCGTCGGTGCTCCTTGGGGGNACACTATGGCGCACAGGGAAGCCCGACAAACTTTAC 800 consensus_7640#2 ------------------------------------------------------------ consensus_7640#0 TTCATT-AGGCA-TAAAGATGTGTAACTGAATGTGTG-TAATAT--GAACGAATATATCT 875 consensus_7640#1 TTCATTTAGGCNCTAAAGATTTGTACCTCAATGTGTNGTAATAATGGAACCAATTTTTCT 860 consensus_7640#2 ------------------------------------------------------------ consensus_7640#0 ATAAACCCATCTATGGACGCCTGCGAC-CACGCAGAAGAGCTGTAATTTATTAACAAAAA 934 consensus_7640#1 TTAAACCCATCTNTAGACNC-TGTGACACACGCAAAAAACTGGTAACTTTTTTACAACAA 919 consensus_7640#2 ------------------------------------------------------------ consensus_7640#0 AAAAAAAAAAAAAAAAA-----GGCCCATG----- 959 consensus_7640#1 CAAACAGAACACAGGCATTTTGNGCCCAACTTTCC 954 consensus_7640#2 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||