These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7656#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1070 fasta sequence [TTTTTTTTTAAAAAGTCCTATAACAAACCTAGGAACGAATTTTATTTCAAAACAAAGCAGTTCGTAATGGCGGGTTTTGAGAGCGTTTCATTTCCGTGGCGTGTGTATGTGCCGAACGTGCGAGATGCGCTCGCTCGACGTGGTAAACCGTTTGTCGCAATGCGGACAGGCGTGCGGCTTTTCCCCCCGGTGCAGCTTCATGTGCACGTACAGGCCATTGCGCGAGGCCAGCTGTTTGTTGCACTCGTCGCACCGGAACTGCTTCTCCTGGCTGTGCGTTA-CATGTGCTCCTTCAGCTCCGAACCCTGCTTGTACTTCTTCGGGCACAGCTTGCACCGGTAC-G-CCGCTCCCCGGTGTGCGTCCGTATGTGGCGCGTCAGATCGTCCGAGCGCAAAAACTGCCGGTCACACTGCGGGCACGCTATCTTACTGCTGCCCGTTTCGTCGTGTATCCGGTAGTGCCGGCGCAGCGTTTGCGGCTGGCTGAAGCTCTTGCTGCACTTGTCACAGTACCACCGTTTGCCTTTCTGTATCATCAGTGGCTGGCTGACGGGTTGCTCCATTTCCTCCGCATTGCTGTCCTCCGCGTCGTCACAGGCCGGGCGGGCATTCGCTATTTCCAGCTTAATCACTGTG-CCCTCGGCTGTGGGCCTTTTTGCGGGGGATGCTACGGTGGCATTGGTTTTCGTTTTACTGTGAAGGCTTTCAAAGCACTGCTCCAGAAGTTTGTCCGCCCGCTGGCACTGCTCGATGAACTGGTACGCTTCCTGTGCCCGAGTCACACACTTGGTGCAGATGTGCTTGGGCAGCAGCGA-TTCGTTGCACGATTCGAGCTCATC---------AATGGATAAAATATCTCGGAAACAGTTCATATGCTCCACACTGTTTGGCTGCACGTACACATCGTCGATGGTGTACAGTTCCGTCTGACCGTCGGTTTCGTCCAGCAGACAAACACGGCAAACGTCCGGTAGTTTTGCGGCCACACTTTCCATACACAACGCACGT-TTTCACTTTTTTCCATCCTTTTGATTCTCACCCGAATGCAATCCGGCAACTACTTTCCTCTCCAGT] [+] EMBL CNS09PBE [TTTTTTTTTAAAAAGTCCTATAACAAACCTAGGAACGAATTTTATTTCAAAACAAAGCAGTTCGTAATGGCGGGTTTTGAGAGCGTTTCATTTCCGTGGCGTGTGTATGTGCCGAACGTGCGAGATGCGCTCGCTCGACGTGGTAAACCGTTTGTCGCAATGCGGACAGGCGTGCGGCTTTTCCCCCCGGTGCAGCTTCATGTGCACGTACAGGCCATTGCGCGAGGCCAGCTGTTTGTTGCACTCGTCGCACCGGAACTGCTTCTCCTGGCTGTGCGTTA CATGTGCTCCTTCAGCTCCGAACCCTGCTTGTACTTCTTCGGGCACAGCTTGCACCGGTAC G CCGCTCCCCGGTGTGCGTCCGTATGTTGCGCGTCAGAACTTCCGAGCGCAAAAACTGCCGGTCACACT ] [+] EMBL CNS09EUJ [ GGAACGAATTTTATTTCAAAACAAAGCAGTTCGTAATGGCGGGTTTTGAGAGCGTTTCATTTCCGTGGCGTGTGTATGTGCCGAACGTGCGAGAAGCGCTCGCTCGACGTGGTAAACCGTTTGTCGCAATGCGGACAGGCGTGCGGCTTTTCCCCCCGGTGCAGCTTCATGTGCACGTACAGGCCATTGCGCGAGGCCAGCTGTTTGTTGCACTCGTCGCACCGGAACTGCTTCTCCTGGCTGTGCGTAA CATGTGCTCCTTCAGCTCCGAACCCTGCTTGTACTTCTTCGGGCACAGCTTGCACCGGTAC G CCGCTCCCCGGTGTGCGTCCGTATGTGGCGCGTCAAAACGTCCGAGCGCAAAAACTGCCGGTAACACTGCGGGCACGCTATCTTACTGCTGCCCGTTTCGTCGTGTATCCGGTAGTGCCGGCGCA CGTTTGCGG ] [+] EMBL CNS0994Z [ ACGAATTTTATTTCAAAACAAAGCAGTTCGTAATGGCGGGTTTTGAGAGCGTTTCATTTCCGTGGCGTGTGTATGTGCCGAACGTGCGAGAAGCGCTCGCTCGACGTGGTAAACCGTTTGTCGCAATGCGGACAGGCGTGCGGCTTTTCCCCCCGGTGCAGCTTCATGTGCACGTACAGGCCATTGCGCGAGGCCAGCTGTTTGTTGCACTCGTCGCACCGGAACTGCTTCTCCTGGCTGTGCGTTA CATGTGCTCCTTCAGCTCCGAACCCTGCTTGTACTTCTTCGGGCACAGCTTGCACCGGTAC G CCGCTCCCCGGTGTGCGTCCGTATGTGGCGCGTCAGATCGTCCGAGCGCAAAAACTGCCGGTCACACTGCGGGCACGCTATCTTTTTTTTGCCCGTTTCGTCGTGTATCCGGTAGTGCCGGCGCAGGTTTTGCGGCTGGCTGAAGCCCTTGCTGCACTTGTCACAGTACCACCGTTTGCCTTTCTGTATCATCAGTGGCTGGCTGACGGGTTGCTCCATTTCCTCCGCATTGCTGTCCTCCGCGTCGTCACAGGCCGGGCGGGCATTCGCTATTTCCAGCTTAATCACTGTG CCCTCGGCTGTGGGCCTTTTTGCGGGGGATGCTACGGTGGCATTGGTTTTCGTTTTACTGTGAAGGCTTTCAAAGCACTGCTCCAGAAGTTTGTCCGCCCGCTGGCACTGCTCGATGAACTGGTACGCTTCCTGTGCCCGAGTAACACACTTGGTGCAGATGTGCTTGGGCAGCAGCGA TTCGTTGCACGATTCGAGCTCATC AATGGATAAAATATCTCGGAAACAGTTCATATGCTCCACACTGTTTGGCTGCACGTACACATCGTCGATGGTGTACAGTTCCGTCTGACCGTCGGTTTCGTCCAGCAGAAAAACACGGCAAACGTCCGGTAGTTT ] [-] EMBL CNS0994Y [ AGCGTTTCATTTCCGTGGCGTGTGTATGTGCCGAACGTGCGAGATGCGCTCGCTCGACGTGGTAAACCGTTTGTCGCAATGCGCACAGGCGTGCGGCTTTTCCCCCCGGTGCAGCTTCATGTGCACGTACAGGCCATTGCGCGAGGCCAGCTGTTTGTTGCACTCGTCGCACCGGAACTGCTTCTCCTGGCTGTGCGTTAGCATGTGCTCCTTCAGCTCCGAACCCTGCTTGTACTTCTTCGGGCACAGCTTGCACCGGTACGG CCGCTCCCCGGTGTGCGTCCGTATGTGGCGCGTCAGATCGTCCGAGCGCAAAAACTGCCGGTCACACTGCGGGCACGCTATCTTACTGCTGCCCGTTTCGTCGTGTATCCGGTAGTGCCGGCGCAGCGTTTGCGGCTGGCTGAAGCTCTTGCTGCACTTGTCACAGTACCACCGTTTGCCTTTCTGTATCATCAGTGGCTGGCTGACGGGTTGCTCCATTTCCTCCGCATTGCTGTCCTCCGCGTCGTCACAGGCCGGGCGGGCATTCGCTATTTCCAGCTTAATCACTGTGCCCCTCGGCTGTGGGCCTT ] [-] EMBL CNS09PBD [ GTGCGGCTTTTCCCCCCGGTGCAGCTTCATGTGCACGTACAGGCCATTGCGCGAGGCCAGCTGTTTGTTGCACTCGTCGCACCGGTACTGCTTCTCCTGGCTGTGCGTTAGCATGTGCTCCTTCAGCTCCGAACCCTGCTTGTACTTCTTCGGGCACAGCTTGCACCGGTACGG CCGCTCCCCGGTGTGCGTCCGTATGTGGCGCGTCAGATCGTCCGAGCGCAAAAACTGCCGGTCACACTGCGGGCACGCTATCTTACTGCTGCCCGTTTCGTCGTGTATCCGGTAGTGCCGGCGCAGCGTTTGCGGCTGGCTGAAGCTCTTGCTGCACTTGTCACAGTACCACCGTTTGCCTTTCTGTATCATCAGTGGCTGGCTGACGGGTTGCTCCATTTCCTCCGCATTGCTGTCCTCCGCGTCGTCACAGGCCGGGCGGGCATTCGCTATTTCCAGCTTAATCACTGTG CCCTCGGCTGTGGGCCTTTTTGCGGGGGATGCTACGGTGGCATTGGTTTTCGTTTTACTGTGAAGGCTTTCAAAGCACTGCTCCAGAAGTTTGTCCGCCCGCTGGCACTGCTCGATGAACTGGTACGCTTCCTGTGCCCGAGTCACACACTTGGTGCAGATGTGCTTGGGCAGCAGCGA TTCGTTGCACGATTCGAGCTCATCATTAATAAAAATGGATAAAATATCTCGGAAACAGTTCATATGCTCCACACTGTTTGGCTGCACGTACACATCGTCGATGGTGTACAGTTCCGTCTGACCGTCGGTTTCGTCCAGCAGACAAACACGGCAAACGTCCGGTAGTTTTGCGGCCACACTTTCCATACACAACGCACGT TTTCACTTTTTTCCATCCTTTTGATTCTCACCCGAATGCAATCCGGCAACTACTTTCCTCTCCAGT] [-] EMBL BX622458 [ CGTTAGCATGTGCTCCTTCAGCTCCGAGCCCTGCTTGTACTTNTTCGGGCACAGCTNGCACCGGTAC GNCCGCTCCCCGGTGTGCGTCCGTATGTGGCGCGTCAGATCGTCCGAGCGCAAAAACTGCCGGTCACACTGCGGGCACGCTATCTTACTGCTGCCCGTTTCGTCGTGTATCCGGTAGTGCCGGCGCAGCGTTTGCGGCTGGCTGAAGCTCTTGCTGCATTTGTCACAGTACCAGCGTTTCCCTTTCTGTATCATCAGTGGCTGGCTGACGGGGTGCTCCATTTCCTCCGCATTGCTGTCCTCCGCGTCGTCACAGGCGGGGCGGGCATTCGCTATTTCCAGCTTAATCACTGTG CCCTCGGATGTGGGACTTTTCGCGGGGGATGCTACGGTGGCATTGGTTTTCGTTTTACTGTGAAGGCTTTCAAAGCACTGCTCCAGAAGTTTGTCCGCCCGCTGGCACTGCTCGATGAACTGGTACGCTTCCTGTGCCCGAGTCACACACCTGGTGCAGATGTGCTTGGGCAGCAGCGA TTCGTTGCACGATTCGAGCTCATCATTAATAAAAATGGATAAAATATCTCGGAAACAGTTCATATGCTCCACACTGTTTGGCTGCACGTACACATCGTCGATGGTGTACAGTTCCGTCTGGCCGTCGGTTTCGTCCAGCAGACAAACACGGCAAACGTCCGGCAGTTTTGTGGCCACACTTTCCATACACAACGCACGTGTTTCACTTTTTTCCATt ] [-] EMBL CNS09EUI [ CGCATTGCTTTCCTCCGCGTCGTCACAGGCCGGGCGGGCATTCGCTATTTCCAGCTTAATCACTGTG CCCTCGGCTGTGGGCCTTTTTGCGGGGGATGCTACGGTGGCATTGGTTTTCGTTTTACTGTGAAGGCTTTCAAAGCACTGCTCCAGAAGTTTGTCCGCCCGCTGGCACTGCTCGATGAACTGGTACGCTTCCTGTGCCCGAGTCACACACTTGGTGCAGATGTGCTTGGGCAGCAGCGATTTCGTTGCACGATTCGAGCTCATC AATGGATAAAATATCTCGGAAACAGTTCATATGCTCCACACTGTTTGGCTGCACGTACACATCGTCGATGGTGTACAGTTCCGTCTGACCGTCGGTTTCGTCCAGCAGACAAACACGGCAAACGTCCGGTAGTTTTGCGGCCACACTTTCCATACACAACGCACGT TTTCACTTTTTTCCATCCTTTTGATTCTCACCCGAATGCAATCCGGCAACTA ] consensusID : consensus_7656#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [CTCCTTCAGCTCCGTAACCCCTGCTTGTACTTCTTCGGGCTACAGCTNTGCACCGGTACNGGCCGNTGCCNCCGGTGTGCAGTGCCTGTATGTTGGCTGCGCTCAGATCTGTCGCGTAGCGCNGAAGAACTTGCCGGTCACACGTGNCGGGACACGGCTATCGTTGACTGCTGCCCGTTTCGTCGTGTATCCAGGTAGTGTCCTGGCGCAGCGTTTGCGGCTGGCTGAAGCTCTTGGCGGCACTGTGTGCACGAGTACCACCGTTTCGCCTTTGCTGGTATGCATCNAGTGGCTGGCTGACGGTTTGCTCCATTTCGCTCCGCATTGCTGGTCCTCCGCGTGCGTCTACAGGCCGGGCGGCATTCGCTATTTCCAGCTTAATCACTGTGCCACTCGCTGTGGGCCATTTTTGCGGGGATGCTACGGTGGCATTGGTTTTCGTTTTACTGTGAAGGCTTTCAAAGCACTGCTCCAGAAGTTTGTCCGCNCCGCTGGCACTGCTCGTATGAACTGGTACGCTTCCTGTGCCCGAGTCACTACACTTGGTGCAGATGTGCTTGGCCAGCAGCGATTCGTTGCACGATTCGAGANTCATCATTAATAAGAGATGGATAAAATATCTCGATAACCNCGGGATTCTTG] [-] EMBL AL929663 [CTCCTTCAGCTCCGTAACCCCTGCTTGTACTTCTTCGGGCTACAGCTNTGCACCGGTACNGGCCGNTGCCNCCGGTGTGCAGTGCCTGTATGTTGGCTGCGCTCAGATCTGTCGCGTAGCGCNGAAGAACTTGCCGGTCACACGTGNCGGGACACGGCTATCGTTGACTGCTGCCCGTTTCGTCGTGTATCCAGGTAGTGTCCTGGCGCAGCGTTTGCGGCTGGCTGAAGCTCTTGGCGGCACTGTGTGCACGAGTACCACCGTTTCGCCTTTGCTGGTATGCATCNAGTGGCTGGCTGACGGTTTGCTCCATTTCGCTCCGCATTGCTGGTCCTCCGCGTGCGTCTACAGGCCGGGCGGCATTCGCTATTTCCAGCTTAATCACTGTGCCACTCGCTGTGGGCCATTTTTGCGGGGATGCTACGGTGGCATTGGTTTTCGTTTTACTGTGAAGGCTTTCAAAGCACTGCTCCAGAAGTTTGTCCGCNCCGCTGGCACTGCTCGTATGAACTGGTACGCTTCCTGTGCCCGAGTCACTACACTTGGTGCAGATGTGCTTGGCCAGCAGCGATTCGTTGCACGATTCGAGANTCATCATTAATAAGAGATGGATAAAATATCTCGATAACCNCGGGATTCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7656#0 TTTTTTTTTAAAAAGTCCTATAACAAACCTAGGAACGAATTTTATTTCAAAACAAAGCAG 60 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 TTCGTAATGGCGGGTTTTGAGAGCGTTTCATTTCCGTGGCGTGTGTATGTGCCGAACGTG 120 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 CGAGATGCGCTCGCTCGACGTGGTAAACCGTTTGTCGCAATGCGGACAGGCGTGCGGCTT 180 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 TTCCCCCCGGTGCAGCTTCATGTGCACGTACAGGCCATTGCGCGAGGCCAGCTGTTTGTT 240 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 GCACTCGTCGCACCGGAACTGCTTCTCCTGGCTGTGCGTTACATGTGCTCCTTCAGCTCC 300 consensus_7656#1 -----------------------------------------------CTCCTTCAGCTCC 13 ************* consensus_7656#0 GAA--CCCTGCTTGTACTTCTTCGGGC-ACAGCTT-GCACCGGTACG--CCGCT--CCCC 352 consensus_7656#1 GTAACCCCTGCTTGTACTTCTTCGGGCTACAGCTNTGCACCGGTACNGGCCGNTGCCNCC 73 * * ********************** ****** ********** *** * * ** consensus_7656#0 GGTGTGC---GTCCGTATGTGG--CGCG-TCAGATCGTCCG---AGCGCAAAAA---CTG 400 consensus_7656#1 GGTGTGCAGTGCCTGTATGTTGGCTGCGCTCAGATCTGTCGCGTAGCGCNGAAGAACTTG 133 ******* * * ****** * *** ******* ** ***** ** ** consensus_7656#0 CCGGTCACAC-TGCGGGCAC---GCTATCTT--ACTGCTGCCCGTTTCGTCGTGTATCC- 453 consensus_7656#1 CCGGTCACACGTGNCGGGACACGGCTATCGTTGACTGCTGCCCGTTTCGTCGTGTATCCA 193 ********** ** ** ** ****** * ************************** consensus_7656#0 GGTAGTGCC--GGCGCAGCGTTTGCGGCTGGCTGAAGCTCTTG-CTGCACT-TGT-CAC- 507 consensus_7656#1 GGTAGTGTCCTGGCGCAGCGTTTGCGGCTGGCTGAAGCTCTTGGCGGCACTGTGTGCACG 253 ******* * ******************************** * ***** *** *** consensus_7656#0 AGTACCACCGTTT-GCCTTTCT--GTAT-CATCA-GTGGCTGGCTGACGGGTTGCTCCAT 562 consensus_7656#1 AGTACCACCGTTTCGCCTTTGCTGGTATGCATCNAGTGGCTGGCTGACGGTTTGCTCCAT 313 ************* ****** **** **** *************** ********* consensus_7656#0 TTC-CTCCGCATTGCTG-TCCTCCGCGT-CGTC-ACAGGCCGGGCGGGCATTCGCTATTT 618 consensus_7656#1 TTCGCTCCGCATTGCTGGTCCTCCGCGTGCGTCTACAGGCCGGGCGG-CATTCGCTATTT 372 *** ************* ********** **** ************* ************ consensus_7656#0 CCAGCTTAATCACTGTGCCCTCGGCTGTGGGCCTTTTTGCGGGGGATGCTACGGTGGCAT 678 consensus_7656#1 CCAGCTTAATCACTGTGCCACTCGCTGTGGGCCATTTTTGCGGGGATGCTACGGTGGCAT 432 ******************* ********** **** ******************* consensus_7656#0 TGGTTTTCGTTTTACTGTGAAGGCTTTCAAAGCACTGCTCCAGAAGTTTGTCCGCCC-GC 737 consensus_7656#1 TGGTTTTCGTTTTACTGTGAAGGCTTTCAAAGCACTGCTCCAGAAGTTTGTCCGCNCCGC 492 ******************************************************* * ** consensus_7656#0 TGGCACTGCTCG-ATGAACTGGTACGCTTCCTGTGCCCGAGTCAC-ACACTTGGTGCAGA 795 consensus_7656#1 TGGCACTGCTCGTATGAACTGGTACGCTTCCTGTGCCCGAGTCACTACACTTGGTGCAGA 552 ************ ******************************** ************** consensus_7656#0 TGTGCTTGGGCAGCAGCGATTCGTTGCACGATTCGAG-CTCATCAATGGATAAAATATCT 854 consensus_7656#1 TGTGCTTGGCCAGCAGCGATTCGTTGCACGATTCGAGANTCATCATTA-ATAAGAGATGG 611 ********* *************************** ****** * **** * ** consensus_7656#0 CGGAAACAGTTCATATGCTCCACACTGTTTGGCTGCACGTACACATCGTCGATGGTGTAC 914 consensus_7656#1 ATAAAATATCTCGATAACCNCGGGATTCTTG----------------------------- 642 *** * ** * * * *** consensus_7656#0 AGTTCCGTCTGACCGTCGGTTTCGTCCAGCAGACAAACACGGCAAACGTCCGGTAGTTTT 974 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 GCGGCCACACTTTCCATACACAACGCACGTTTTCACTTTTTTCCATCCTTTTGATTCTCA 1034 consensus_7656#1 ------------------------------------------------------------ consensus_7656#0 CCCGAATGCAATCCGGCAACTACTTTCCTCTCCAGT 1070 consensus_7656#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||