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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1461 fasta sequence
[CCGCGGCAGAGAAGTGGAGTCGACCCCAACCAGCAATGGCAGTGTGATGATGGCCAACGTAGCGTTTGCGAAAAGAGGTAGGCTTTGGTCCCCTTGGCTAGTTTAATAGGTTACCGATGAAGATTCGGTTTACTTTTCTCAACCCGAAACAAAACGCCAAAACTGTAAATGCGAACGATTTTGCCACCAGCACCGGATCTACCAACAATAAGCAATACGATAGCACTGGATGATAGAAACAGTAAGGGACGCCAAAAATCACGAAAATTTTGTATAATGTTTGTTTCTTTCCTATACATACAACAACAGCAACAGAAAAAAACCATAAACAAATCTACCTGTTGTATTGAAAATGCGTCAACGGTCACAGTCGGGTTTTGGTTGAAGAGGTTTTGTTTGCTTTTTGCTGGAAAGCTTATTCAATGCGTACTGTGAACGAAGTCCCGCTCCCCGCCCCCCTCCCAACACATAATTTCTAATCATTATTACAAAAGAAACAAAATGCGGCGTTGCACGTACATACGAAGACCGAATGGTGAAAGATGGGGAAAGGCAGCGGGAAAACAAGGGAGAGCGAAGAAACCGAGTAGCATAGTAGCGCGGCATTAAGAAAAGTGGGTATAGTAGAGTCATAGGATTTTAAAAGCAAAGGAAAAAGCATAAATAGACTGTGTCTTATATTAGCGTGAACAAAATTAGACGATAAATCCATACTACCTTCTCCACTCTCACCCCCCCCCCCCCCACCCCCCCAGTGGTCTCCATCTTCCCGCCCTTCCGGGGGCTGTTATTTTAAGCTGCCTCTCTAATCAAAAAACGCGCCATCCGCCAATCCCATACCCGCTCACGGGTAACGAACGTGTTAGTACGTTCCGCACGATTCGGTTATTCGAAGTTTTAGCGAAACTCATAACTCCCAACCTGAGCATCCACTCGTTTCAGTTGACAAATTTGATGCAAAAAATGTGTAATGTTTTCCGGGCTTGTTTTGTATTTCATTTTACATTTTGAGTAGTTTATTTTGTTTTTTTTTTTGTTCAGCTTGCCCTCGGTGGTTAAGCTGTAGCTTGCCTGTAGTCGCTTGTCAGATTGTTTAAAATCATCCAAATTTGGTTGGCAGCCGCAACCCTCCAACCCGGAAATAGTAGCAACCTTCACTGCTGTATCAGCTGTTCGGTTTACGATCATTAGGGCGTGCACCTTATGTGCATGCTTGTCATTTATGAGATTTCTCACTCCGTTTCCGAGCGGAAATGGTGGACATTGTTTAATGCACAAACATAATTATTTAATAAAAATCTTTCTTTCCAACGGTGGGGAGACCAACATCAAAAAAGAGCAGTGGTAAAATCAGTTCACTATAGACCGCAAAAGCATATATGAGAAACGTAGGGTCTAGCGAGCGCAACCAACCAAGAGATGGGCAAGTGCAGCAGAGTGCAAATACAGTAATAAGTGCAC]
[+] EMBL BM627455 [CCGCGGCAGAGAAGTGGAGTCGACCCCAACCAGCAATGGCAGTGTGATGATGGCCAACGTAGCGTTTGCGAAAAGAGGTAGGCTTTGGTCCCCTTGGCTAGTTTAATAGGTTACCGATGAAGATTCGGTTTACTTTTCTCAACCCGAAACAAAACGCCAAAACTGTAAATGCGAACGATTTTGCCACCAGCACCGGATCTACCAACAATAAGCAATACGATAGCACTGGATGATAGAAACAGTAAGGGACGCCAAAAATCACGAAAATTTTGTATAATGTTTGTTTCTTTCCTATACATACAACAACAGCAACAGAAAAAAACCATAAACAAATCTACCTGTTGTATTGAAAATGCGTCAACGGTCACAGTCGGGTTTTGGTTGAAGAGGTTTTGTTTGCTTTTTGCTGGAAAGCTTATTCAATGCGTACTGTGAACGAAGTCCCGCTCCCCGCCCCCCTCCCAACACATAATTTCTAATCATTATTACAAAAGAAACAAAATGCGGCGTTGCACGTACATACGAAGACCGAATGGTGAAAGATGGGGAAAGGCAGCGGGAAAACAAGGGAGAGCGAAGAAACCGAGTAGCATAGTAGCGCGGCATTAAGAAAAGTGGGTATAGTAGAGTCATAGGATTTT ]
[-] EMBL AGA284071 [ CCAACCAGCAATGGCAGTGTGATGATGGCCAACGTAGCGTTTGCGAAAAGAGGTAGGCTTTGGTCCCCTTGGCTAGTTTAATAGGTTACCGATGAAGATTCGGTTTACTTTTCTCAACCCGAAACAAAACGCCAAAACTGTAAATGCGAACGATTTTGCCACCAGCACCGGATCTACCAACAATAAGCAATACGATAGCACTGGATGATAGAAACAGTAAGGGACGCCAAAAATCACGAAAATTTTGTATAATGTTTGTTTCTTTCCTATACATACAACAACAGCAACAGAAAAAA ]
[+] EMBL AGA285367 [ AATGGCAGTGTGATGATGGCCAACGTAGCGTTTGCGAAAAGAGGTAGGCTTTGGTCCCCTTGGCTAGTTTAATAGGTTACCGATGAAGATTCGGTTTACTTTTCTCAACCCGAAACAAAACGCCAAAACTGTAAATGCGAACGATTTTGCCACCAGCACCGGATCTACCAACAATAAGCAATACGATAGCACTGGATGATAGAAACAGTAAGGGACGCCAAAAATCACGAAAATTTTGTATAATGTTTGTTTCTTTCCTATACATACAACAACAGCAACAGAAAAAAAa ]
[+] EMBL BX606549 [ CGTCAACGGTCACAGTCGGGTTTTGGTTGAAGAGGTTTTGTTTGCTTTTTGCTGGAAAGCTTATTCAATGCGTACTGTGAACGAAGTCCCGCTCCCCGCCCCCCTCCCAACACATAATTTCTAATCATTATTACAAAAGAAACAAAATGCGGCGTTGCACGTACATACGAAGACCGAATGGTGAAAGATGGGGAAAGGCAGCGGGAAAACAAGGGAGAGCGAAGAAACCGAGTAGCATAGTAGCGCGGCATTAAGAAAAGTGGGTATAGTAGAGTCATAGGATTTTAAAAGCAAAGGAAAAAGCATAAATAGACTGTGTCTTATATTAGCGTGAACAAAATTAGACGATAAATCCATACTACCTTCTCCACTCTCACCCCCCCCCCCCCCACCCCCCCAGTGGTCTCCATCTTCCCGCCCTTCCGGGGGCTGTTATTTTAAGCTGCCTCTCTAATCAAAAAACGCGCCATCCGCCAATCCCATACCCGCTCACGGGTAACGAACGTGTTAGTACGTTCCGCACGATTCGGTTATTCGAAGTTTTAGCGAAACTCATAACTCCCAACCTGAGCATCCACTCGTTTCAGTTGACAAATTTGATGCAAAAAATGTGTAATGTTTTCCGGGCTTGTTT ]
[+] EMBL BX617026 [ CTCCACTCTCACCCCCCCCCCCCCCACCCCCCCACTGGTCTCCATCTTCCCGCCCTTCCGGGGGCTGTTATTTTAAGCTGCCTCTCTAATCAAAAAACGCGCCATCCGCCAATCCCATACCCGCTCACGGGTAACGAACGTGTTAGTACGTTCCGCACGATTCGGTTATTCGAAGTTTTAGCGAAACTCATAACTCCCAACCTGAGCATCCACTCGTTTCAGTTGACAAATTTGATGCAAAAAATGTGTAATGTTTT CGGGCTTGTTTTGTATTTCATTTTACATTTTGAGTAGTTTATTTTGTTTTTTTTTTTGTTCAGCTTGCCCTCGGTGGTTAAGCTGTAGCTTGCCTGTAGTCGCTTGTCAGATTGTTTAAAATCATCCAAATTTGGTTGGCAGCCGCAACCCTCCAACCCGGAAATAGTAGCAACCTTCACTGCTGTATCAGCTGTTCGGTTTACGATCATTAGGGCGTGCACCTTATGTGCATGCTTGTCATTTATGAGATTTCTCACTCCGTTTCCGAGCGGAAATGGTGGACATTGTTTAATGCACAAACATAATTATTTAATAAAAATCTTTCTTTCCAACGGTGGGGA ]
[+] EMBL BX613077 [ GAATGGTTAAAAACATCCAAATTTGGTTGGCAGCCGCAACCCCCCAACCCGGAAATAGAAGCAACCTTCACGGCTGTATCAGCTGTTCGGTTTACGAACATTAGGGCGGGCACCTTATGTGCATGCTTGTCATTTATGAGATTTCTCACTCCGTTTCCGAGCGGAAATGGTGGACATTGTTTAATGCAGAAACATAATTATTTAATAAAAATCTTTCTCCCCAACGGTGGGGAGACCAACATCAAAAAAGAGCAGTGGTAAAATCAGTTCACTATAGACCGCAAAAGCATATATGAGAAACGTAGGGTCTAGCGAGCGCAACCAACCAAGAGATGGGCAAGTGCAGCAGAGTGCAAATACAGTAATAAGTGCAC]
consensusID : consensus_7663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 487 fasta sequence
[CCGGGCATTGCACGTACATACGAAGACCGAATGGTGAAAGGTGGGGAAAGGCAGCGGGAAAACAAGGGAGAGCGAAGAAACCGAGTAGCATAGTAGCGCGGCATTAAGAAAAGTGGGTATAGTAGAGTCATAGGATTTTAAAAGCAAAGGAAAAAGCATAAATAGACTGTGTCTTATATTAGCGTGAACAAAATTAGACGATAAATCCATACTACCTTCTCCACTCTCACCCCCCCACTGGTCTCCATCTTCCCGCCCTTCCGGGGGCTGTTATTTTAAGCTGCCTCTCTAATCAAAACACGCGCCATCCGCCAATCACATACCCGCTCACGGGTAACGAACGTGTTAGTACGTTCCGCACGATTCGGTTATTCGAAATTTTAGCAAAACTCATAACTCCCAACCTGATCATCCACTCGTTTCAGTTGTCAAATTTGATGCAAAAAATGTGTAATGTTTTCGGGCTTGTTTTGTATTTTATTTTACA]
[+] EMBL BM617762 [CCGGGCATTGCACGTACATACGAAGACCGAATGGTGAAAGGTGGGGAAAGGCAGCGGGAAAACAAGGGAGAGCGAAGAAACCGAGTAGCATAGTAGCGCGGCATTAAGAAAAGTGGGTATAGTAGAGTCATAGGATTTTAAAAGCAAAGGAAAAAGCATAAATAGACTGTGTCTTATATTAGCGTGAACAAAATTAGACGATAAATCCATACTACCTTCTCCACTCTCACCCCCCCACTGGTCTCCATCTTCCCGCCCTTCCGGGGGCTGTTATTTTAAGCTGCCTCTCTAATCAAAACACGCGCCATCCGCCAATCACATACCCGCTCACGGGTAACGAACGTGTTAGTACGTTCCGCACGATTCGGTTATTCGAAATTTTAGCAAAACTCATAACTCCCAACCTGATCATCCACTCGTTTCAGTTGTCAAATTTGATGCAAAAAATGTGTAATGTTTTCGGGCTTGTTTTGTATTTTATTTTACA]
[+] EMBL BX614781 [ GGAAAGGCAGCGGGAAAACAAGGGAGAGCGAAGAAACGGAGTAGCATAGTAGCGCGGCATAAAGAAAAGTGGGTATAGTAGAGTCATAGGATcgga ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7663#0 CCGCGGCAGAGAAGTGGAGTCGACCCCAACCAGCAATGGCAGTGTGATGATGGCCAACGT 60
consensus_7663#1 ------------------------------------------------------------
consensus_7663#0 AGCGTTTGCGAAAAGAGGTAGGCTTTGGTCCCCTTGGCTAGTTTAATAGGTTACCGATGA 120
consensus_7663#1 ------------------------------------------------------------
consensus_7663#0 AGATTCGGTTTACTTTTCTCAACCCGAAACAAAACGCCAAAACTGTAAATGCGAACGATT 180
consensus_7663#1 ------------------------------------------------------------
consensus_7663#0 TTGCCACCAGCACCGGATCTACCAACAATAAGCAATACGATAGCACTGGATGATAGAAAC 240
consensus_7663#1 ------------------------------------------------------------
consensus_7663#0 AGTAAGGGACGCCAAAAATCACGAAAATTTTGTATAATGTTTGTTTCTTTCCTATACATA 300
consensus_7663#1 ------------------------------------------------------------
consensus_7663#0 CAACAACAGCAACAGAAAAAAACCATAAACAAATCTACCTGTTGTATTGAAAATGCGTCA 360
consensus_7663#1 ------------------------------------------------------------
consensus_7663#0 ACGGTCACAGTCGGGTTTTGGTTGAAGAGGTTTTGTTTGCTTTTTGCTGGAAAGCTTATT 420
consensus_7663#1 ------------------------------------------------------------
consensus_7663#0 CAATGCGTACTGTGAACGAAGTCCCGCTCCCCGCCCCCCTCCCAACACATAATTTCTAAT 480
consensus_7663#1 ------------------------------------------------------------
consensus_7663#0 CATTATTACAAAAGAAACAAAATGCGGCGTTGCACGTACATACGAAGACCGAATGGTGAA 540
consensus_7663#1 ----------------------CCGGGCATTGCACGTACATACGAAGACCGAATGGTGAA 38
*** *******************************
consensus_7663#0 AGATGGGGAAAGGCAGCGGGAAAACAAGGGAGAGCGAAGAAACCGAGTAGCATAGTAGCG 600
consensus_7663#1 AGGTGGGGAAAGGCAGCGGGAAAACAAGGGAGAGCGAAGAAACCGAGTAGCATAGTAGCG 98
** *********************************************************
consensus_7663#0 CGGCATTAAGAAAAGTGGGTATAGTAGAGTCATAGGATTTTAAAAGCAAAGGAAAAAGCA 660
consensus_7663#1 CGGCATTAAGAAAAGTGGGTATAGTAGAGTCATAGGATTTTAAAAGCAAAGGAAAAAGCA 158
************************************************************
consensus_7663#0 TAAATAGACTGTGTCTTATATTAGCGTGAACAAAATTAGACGATAAATCCATACTACCTT 720
consensus_7663#1 TAAATAGACTGTGTCTTATATTAGCGTGAACAAAATTAGACGATAAATCCATACTACCTT 218
************************************************************
consensus_7663#0 CTCCACTCTCACCCCCCCCCCCCCCACCCCCCCAGTGGTCTCCATCTTCCCGCCCTTCCG 780
consensus_7663#1 CTCCACTCTCACCCCCC---------------CACTGGTCTCCATCTTCCCGCCCTTCCG 263
***************** ** *************************
consensus_7663#0 GGGGCTGTTATTTTAAGCTGCCTCTCTAATCAAAAAACGCGCCATCCGCCAATCCCATAC 840
consensus_7663#1 GGGGCTGTTATTTTAAGCTGCCTCTCTAATCAAAACACGCGCCATCCGCCAATCACATAC 323
*********************************** ****************** *****
consensus_7663#0 CCGCTCACGGGTAACGAACGTGTTAGTACGTTCCGCACGATTCGGTTATTCGAAGTTTTA 900
consensus_7663#1 CCGCTCACGGGTAACGAACGTGTTAGTACGTTCCGCACGATTCGGTTATTCGAAATTTTA 383
****************************************************** *****
consensus_7663#0 GCGAAACTCATAACTCCCAACCTGAGCATCCACTCGTTTCAGTTGACAAATTTGATGCAA 960
consensus_7663#1 GCAAAACTCATAACTCCCAACCTGATCATCCACTCGTTTCAGTTGTCAAATTTGATGCAA 443
** ********************** ******************* **************
consensus_7663#0 AAAATGTGTAATGTTTTCCGGGCTTGTTTTGTATTTCATTTTACATTTTGAGTAGTTTAT 1020
consensus_7663#1 AAAATGTGTAATGTTTTC-GGGCTTGTTTTGTATTTTATTTTACA--------------- 487
****************** ***************** ********
consensus_7663#0 TTTGTTTTTTTTTTTGTTCAGCTTGCCCTCGGTGGTTAAGCTGTAGCTTGCCTGTAGTCG 1080
consensus_7663#1 ------------------------------------------------------------
consensus_7663#0 CTTGTCAGATTGTTTAAAATCATCCAAATTTGGTTGGCAGCCGCAACCCTCCAACCCGGA 1140
consensus_7663#1 ------------------------------------------------------------
consensus_7663#0 AATAGTAGCAACCTTCACTGCTGTATCAGCTGTTCGGTTTACGATCATTAGGGCGTGCAC 1200
consensus_7663#1 ------------------------------------------------------------
consensus_7663#0 CTTATGTGCATGCTTGTCATTTATGAGATTTCTCACTCCGTTTCCGAGCGGAAATGGTGG 1260
consensus_7663#1 ------------------------------------------------------------
consensus_7663#0 ACATTGTTTAATGCACAAACATAATTATTTAATAAAAATCTTTCTTTCCAACGGTGGGGA 1320
consensus_7663#1 ------------------------------------------------------------
consensus_7663#0 GACCAACATCAAAAAAGAGCAGTGGTAAAATCAGTTCACTATAGACCGCAAAAGCATATA 1380
consensus_7663#1 ------------------------------------------------------------
consensus_7663#0 TGAGAAACGTAGGGTCTAGCGAGCGCAACCAACCAAGAGATGGGCAAGTGCAGCAGAGTG 1440
consensus_7663#1 ------------------------------------------------------------
consensus_7663#0 CAAATACAGTAATAAGTGCAC 1461
consensus_7663#1 ---------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||