These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1204 fasta sequence [CCGCTTAAAAGTTGAATGTGAAGCGTGATGATGGGCCACCATACGAACAGAGTGTGTGTATGGTTGTACGCGTATGGGTGTAATTTGAAAGCGAAACAAAAGCAAAAGTTGTAAGATTCTAAATTTTGATTATAGAGTTTATTTTCGATTGTCGATCAAAAAAGACGCTAAAAGTGTGAAATTCCTTGAACAATGTGAATCTAAATTTGCTTTACCGCTTTATTTCTACTGTAAAGCAAACCCTTTTCTATTTTATTATAATTAATTTGTATTTTATATTAATTTTGAAAGCGCGGAGCCACAGAGCAGCGAACAAGATAAACAATCAACCCCGTAATAAATGGAAAACAGCCCCACAAACTGAACGTTGAGTTTAGAGCTAGGTTCAAAATTGTGATATCATTTATCTAAATGCGTTAAGGAAATTATGTATAAGCCTTCTCCCTTCTTTCCCAATTATTCTCTCCTTTATCTCTTGCCTAATTTATGCTGCTGAACCAGGCAACTAGCAAAATCATAATCCAACCGAATCAAACCGAAACCGAATTAGCCACGAAGCAACGGGAGTAGCGAACGAAACCAAAATTGAATGTAATTGTAAACACGCCAAGATGCAAACTTTTACTGTGTATTATTCCATTACCATCCCCCAAGCCCACGTGGAAAAATGTTTAATGAAAACGCAAAACCTCTGTCTGTCTGTGTAATCTGTAATTGCTGTTTGACGGACACCACACACAGCTTTGGGAAGAAGCTTGGTAGGAAATTCCTCCCGCATTTCTTCTCCTTCTCGTTGCCCACGCTTTATCCCCACTTAGCTTAATTTGTGTTCTCGCGCCATGTACATAGTAGAGACACGCAAAGTGAGATTCACCGTACACAAATACACAATCACACAGACCTATTTTGATGAGCAATCGAGAGCAGTTTCTAGGGTTTTTCGGTAGTTTGTCGCGTGTCGTCGTGCAGTAGCTAGCAGG-AAGTAAAAAGGCACCACACCACACTATCTTATGCACAGAGGCGTTATAACAGACCCTAGGGTTGGTAAAACCCTCCTATTGCTGCTGCAACTTAGCGTAGCGTGAGAAGAAAACGAGAGCCTTAGCCGTGTAAATGTGTGTATGATAGTAACTGTAATCTTAAATGGGCAGACCGTCTATCGTGTCGCTATAAAAAAAAGAGCGTGAAAGGAATTGGTGGGAAC] [+] EMBL BM614141 [CCGCTTAAAAGTTGAATGTGAAGCGTGATGATGGGCCACCATACGAACAGAGTGTGTGTATGGTTGTACGCGTATGGGTGTAATTTGAAAGCGAAACAAAAGCAAAAGTTGTAAGATTCTAAATTTTGATTATAGAGTTTATTTTCGATTGTCGATCAAAAAAGACGCTAAAAGTGTGAAATTCCTTGAACAATGTGAATCTAAATTTGCTTTACCGCTTTATTTCTACTGTAAAGCAAACCCTTTTCTATTTTATTATAATTAATTTGTATTTTATATTAATTTTGAAAGCGCGGAGCCACAGAGCAGCGAACAAGATAAACAATCAACCCCGTAATAAATGGAAAACAGCCCCACAAACTG ] [+] EMBL BX621098 [ GAACAAGATAAACAATCAACCCCGTAATAAATGGAAAACAGCCCCACAAACTGAACGTTGAGTTTAGAGCTAGGTTCAAAATTGTGATATCATTTATCTAAATGCGTTAAGGAAATTATGTATAAGCCTTCTCCCTTCTTTCCCAATTATTCTCTCCTTTATCTCTTGCCTAATTTATGCTGCTGAACCAGGCAACTAGCAAAATCATAATCCAACCGAATCAAACCGAAACCGAATTAGCTACGAAGCAACGGGAGTAGCGAACGAAACCAAAATTGAATGTAATTGTAAACACGCCAAGATGCAAACTTTTACTGTGTATTATTCCATTACCATCCCCCAAGCCCACGTGGAAAAATGTTTAATGAAAACGCAAAACCTCTGTCTGTCTGTGTAATCTGTAATTGCTGTTTGACGGACACCACACACAGCTTTGGGAAGAAGCTTGGTAGGAAATTCCTCCCGCATTTCTTCTCCTTCTCGTTGCCCACGCTTTATCCCCACTTAGCTTAATTTGTGTTCTCGCGCCATGTACATAGTAGAGACACGCAAAGTGAGATTCACCGTACACAAATACACAATCACACAGACCTATTTTGATGAGCAATCGAGAGCAGTTTCTAGGGNTTTTCGGTAGTTTGTCGCGTGTCGTCGTGCAGTAGCTAGCAGGNAAGTAAAAAGGCACCACACCACACTATCTTATGCACAGAGGCGTTATAACAGACCCTANGGGTGGTAAAACCCTCCTATTGCTGCTGCAACT ] [+] EMBL BX620727 [ ATAAACAATCAACCCCGTNATAAATGGAAAACAGCCCCACAAACTGAACGTTGAGTTTAGAGCTAGGTTCAAAATTGTGATATCATTTATCTAAATGCGTTAAGGAAATTATTTATAAGCCTTCTCCCTTCTTTCCCAATTATTCTCTCCTTTATCTCTTGCCTAATTTATGCTGCTGAACCAGGCAACTAGCAAAATCATAATCCAACCGAATCAAACCGAAACCGAATTAGCCACGAAGCAACGGGAGTAGCGAACGAAACCAAAATTGAATGTAATTGTAAACACGCCAAGATGCAAACTTTTACTGTGTATTATTCCATTACCATCCCCCAAGCCCACGTGGAAAAATGTTTAATGAAAACGCAAAACCTCTGTCTGTCTGTGTAATCTGTAATTGCTGTTTGACGGACACCACACACAGCTTTGGGAAGAAGCTTGGTAGGAAATTCCTCCCGCATTTCTTCTCCTTCTCGTTGCCCACGCTTTATCCCCACTTAGCTTAATTTGTGTTCTCGCGCCATGTACATAGTAGAGACACGCAAAGTGAGATTCACCGTACACAAATACACAATCACACAGACCTATTTTGATGAGCAATCGAGAGCAGTTTCTANGGTTTTTCGGTAGTTTGTCGCGTGTCGTCGTGCAGTAGCTAGCAGG AAGTAAAAAGGCACCACACCACACTATCTTATGCACAGAGGCGTTATA ] [+] EMBL BX621914 [ AACAATCAACCCCGTAATAAATGGAAAACAGCCCCACAAACTGAACGTTGAGTTTAGAGCTAGGTTCAAAATTGTGATATCATTTATCTAAATGCGTTAAGGAAATTATGTATAAGCCTTCTCCCTTCTTTCCCAATTATTCTCTCCTTTATCTCTTGCCTAATTTATGCTGCTGAACCAGGCAACTAGCAAAATCATAATCCAACCGAATCAAACCGAAACCGAATTAGCTACGAAGCAACGGGAGTAGCGAACGAAACCAAAATTGAATGTAATTGTAAACACGCCAAGATGCAAACTTTTACTGTGTATTATTCCATTACCATCCCCCAAGCCCACGTGGAAAAATGTTTAATGAAAACGCAAAACCTCTGTCTGTCTGTGTAATCTGTAATTGCTGTTTGACGGACACCACACACAGCTTTGGGAAGAAGCTTGGTAGGAAATTCCTCCCGCATTTCTTCTCCTTCTCGTTGCCCACGCTTTATCCCCACTTAGCTTAATTTGTGTTCTCGCGCCATGTACATAGTAGAGACACGCAAAGTGAGATTCACCGTACACAAATACACAATCACACAGACCTATTTTGATGAGCAATCGAGAGCAGTTTCTAGGGTTTTTCGGTAGTTTGTCGCGTGTCGTCGTGCAGTAGCTAGCAGG AAGTAAAAAGGCACCACACCACACTATCTTATGCACAGAGGCGTTATAACAGACCCTAGGGTTGGTAAAACCCTCCTATTGCTGCTGCAACTTAGCGT ] [+] EMBL BX625190 [ AACCCCGTAATAAATGGAAAACAGCCCCACAAACTGAACGTTGAGTTTAGAGCTAGGTTCAAAATTGTGATATCATTTATCTAAATGCGTTAAGGAAATTATGTATAAGCCTTCTCCCTTCTTTCCCAATTATTCTCTCCTTTATCTCTTGCCTAATTTATGCTGCTGAACCAGGCAACTAGCAAAATCATAATCCAACCGAATCAAACCGAAACCGAATTAGCCACGAAGCAACGGGAGTAGCGAACGAAACCAAAATTGAATGTAATTGTAAACACGCCAAGATGCAAACTTTTACTGTGTATTATTCCATTACCATCCCCCAAGCCCACGTGGAAAAATGTTTAATGAAAACGCAAAACCTCTGTCTGTCTGTGTAATCTGTAATTGCTGTTTGACGGACACCACACACAGCTTTGGGAAGAAGCTTGGTAGGAAATTCCTCCCGCATTTCTTCTCCTTCTCGTTGCCCACGCTTTATCCCCACTTAGCTTAATTTGTGTTCTCGCGCCATGTACATAGTAGAGACACGCAAAGTGAGATTCACCGTACACAAATACACAATCACACAGACCTATTTTGATGAGCAATCGAGAGCAGTTTCTAGGGTTTTTCGGTAGTTTGTCGCGTGTCGTCGTGCAGTAGCTAGCAGG AAGTAAAAAGGCACCACACCACACTATCT ] [+] EMBL BX623254 [ ATGGAAAACAGCCCCACAAACTGAACGTTGAGTTTAGAGCTAGGTTCAAAATTGTGATATCATTTATCTAAATGCGTTAAGGAAATTATGTATAAGCCTTCTCCCTTCTTTCCCAATTATTCTCTCCTTTATCTCTTGCCTAATTTATGCTGCTGAACCAGGCAACTAGCAAAATCATAATCCAACCGAATCAAACCGAAACCGAATTAGCCACGAAGCAACGGGAGTAGCGAACGAAACCAAAATTGAATGTAATTGTAAACACGCCAAGATGCAAACTTTTACTGTGTATTATTCCATTACCATCCCCCAAGCCCACGTGGAAAAATGTTTAATGAAAACGCAAAACCTCTGTCTGTCTGTGTAATCTGTAATTGCTGTTTGACGGACACCACACACAGCTTTGGGAAGAAGCTTGGTAGGAAATTCCTCCCGCATTTCTTCTCCTTCTCGTTGCCCACGCTTTATCCCCACTTAGCTTAATTTGTGTTCTCGCGCCATGTACATAGTAGAGACACGCAAAGTGAGATTCACCGTACACAAATACACAATCACACAGACCTATTTTGATGAGCAAT ] [+] EMBL BX618614 [ CACGTGGAAAAATGTTTAATGAAAACGCAAAACCTCTGTCTGTCTGTGTAATCTGTAATTGCTGTTTGACGGACACCACACACAGCTTTGGGAAGAAGCTTGGTAGGAAATTCCTCCCGCATTTCTTCTCCTTCTCGTTGCCCACGCTTTATCCCCACTTAGCTTAATTTGTGTTCTCGCGCCATGTACATAGTAGAGACACGCAAAGTGAGATTCACCGTACACAAATACACAATCACACAGACCTATTTTGATGAGCAATCGAGAGCAGTTTCTAGGGTTTTTCGGTAGTTTGTCGCGTGTCGTCGTGCAGTAGCTAGCAGG AAGTAAAAAGGCACCACACCACACTATCTTATGCACAGAGGCGTTATAACAGACCCTAGGGTTGGTAAAACCCTCCTATTGCTGCTGCAACTTAGCGTAGCGTGAGAAGAAAACGAGAGCCTTAGCCGTGTAAATGTGTGTATGATAGTAACTGTAATCTTAAATGGGCAGACCGTCTATCGTGTCGCTATAAAAAAAAGAGCGTGAAAGGAATTGGTGGGAAC] consensusID : consensus_7671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCGTGCGCGCGCGCGCGAAAAACCAGAAGAAAACGAGAGCCTTAGCCGTGTAAATGTGTGTATGATAGTAACTGTAATCTTAAATGGGCAGACCGTCTATCGTGTCGCTATAAAAAAAAGAGCGTGAAAGGAATTGGTGGGAACGAACCCCCTCTGCGAAACACTTTAACCTAATTGGAAAGATTTCGCGCAGAAAGTGCTTGGTGTGTGTGTGTGTGTATATAATGTGGAAATTTACAAACAACTGGCTGTAAAGTAAAGGAAGCGAATGGTAAAAAACACTGAAGAAAGTGAGGCTGTTGCAGCCGTTATTAGCGAGTCGCGTGAGAGAGGCGAGGGGCAGGATTAAGTATATACACTAACTCGATGAGCGGTTATTGCGATAAAAGATAACGGAAAACGGAAGGGGGAGAAAATACGGTGAGGAAAACATTGAGGAAACACAAAAGTA] [+] EMBL BM644639 [CCGCCCACGCGTCCGCCCACGCGTCCGGCGTGCGCGCGCGCGCGAAAAACCAGAAGAAAACGAGAGCCTTAGCCGTGTAAATGTGTGTATGATAGTAACTGTAATCTTAAATGGGCAGACCGTCTATCGTGTCGCTATAAAAAAAAGAGCGTGAAAGGAATTGGTGGGAACGAACCCCCTCTGCGAAACACTTTAACCTAATTGGAAAGATTTCGCGCAGAAAGTGCTTGGTGTGTGTGTGTGTGTATATAATGTGGAAATTTACAAACAACTGGCTGTAAAGTAAAGGAAGCGAATGGTAAAAAACACTGAAGAAAGTGAGGCTGTTGCAGCCGTTATTAGCGAGTCGCGTGAGAGAGGCGAGGGGCAGGATTAAGTATATACACTAACTCGATGAGCGGTTATTGCGATAAAAGATAACGGAAAACGGAAGGGGGAGAAAATACGGTGAGGAAAACATTGAGGAAACACAAAAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7671#0 CCGCTTAAAAGTTGAATGTGAAGCGTGATGATGGGCCACCATACGAACAGAGTGTGTGTA 60 consensus_7671#1 ----------------------------------CCGCCCACGCGTCC-GCCCACGCGTC 25 * *** ** * * * ** consensus_7671#0 TGGTTGTACGCGTATGGGTGTAATTTGAAAGCGAAACAAAAGCAAAAGTTGTAAGATTCT 120 consensus_7671#1 CGGC-GTGCGCGCGCGCGCGAAAAACCAGAAGAAAACGAGAGCCTTAGCCGTGTAAATGT 84 ** ** **** * * * ** * * **** * *** ** ** * * * consensus_7671#0 AAATTTTGATTATAGAGTTTATTTTCGATTGTCGATCAAAAAAGACGCTAAAAGTGT-GA 179 consensus_7671#1 GTGTAT-GATAGTAACTGTAATCTTAAATGGGCAGAC--------CGTCTATCGTGTCGC 135 * * *** ** * ** ** ** * * * ** * **** * consensus_7671#0 AATTCCTTGAACAATGTGAATCTAAATTTGCTTTACCGCTTTATTTCTACTGTAAAGCAA 239 consensus_7671#1 TATAAAAAAAAGAGCGTGAAAG-GAATTGGTGGGAACG---AACCCCCTCTGCGAAACA- 190 ** ** * ***** **** * * ** * * *** ** ** consensus_7671#0 ACCCTTTTCTATTTTATTATAATTAATTTGTATTTTATATTAATTTTGAAAGCGCGGAGC 299 consensus_7671#1 -----CTTTAACCTAATTGGAAAGATTTCGCGCAGAAAGTGCTTGGTGTGTGTGTGTGTG 245 ** * * *** ** * ** * * * * ** * * * consensus_7671#0 CACAGAGCAGCGAACAAGATAAACAATCAACCCCGTAATAAATGGAAAACAGCCCCACAA 359 consensus_7671#1 TATATAATGTGGAAATTTACAAACAACTGGCTGTAAAGTAAA-GGAAGCGAATGGTAAAA 304 * * * *** * ****** * * **** **** * * ** consensus_7671#0 ACTGAACGTTGAGTTTAGAGCTAGGTTCAAAATTGTGATATCATTTATCTAAATGCGTTA 419 consensus_7671#1 A----ACACTGAAG--AAAGTGAGGCT----GTTGCAGCCGTTATTAGCGAGTCGCGTGA 354 * ** *** * ** *** * *** *** * * **** * consensus_7671#0 AGGAAATTATGTATAAGCCTTCTCCCTTCTTTCCCAATTATTCTCTCCTTTATCTCTTGC 479 consensus_7671#1 GAGAGGCGAGGGGCAGGATT---------------AAGTATATACAC-----TAACTCGA 394 ** * * * * * ** *** * * * ** * consensus_7671#0 CTAATTTATGCTGCTGAACCAGGCAACTAGCAAAATCATAATCCAACCGAATCAAACCGA 539 consensus_7671#1 TGAGCGGTTATTGCGATAAAAGATAAC--GGAAAACGGAAGGGGGAGAAAAT---ACGGT 449 * * *** * ** *** * **** * * *** ** * consensus_7671#0 AACCGAATTAGCCACGAAGCAACGGGAGTAGCGAACGAAACCAAAATTGAATGTAATTGT 599 consensus_7671#1 GAGGAAAACATTGAGGAAACA-CAAAAGTA------------------------------ 478 * ** * * *** ** * **** consensus_7671#0 AAACACGCCAAGATGCAAACTTTTACTGTGTATTATTCCATTACCATCCCCCAAGCCCAC 659 consensus_7671#1 ------------------------------------------------------------ consensus_7671#0 GTGGAAAAATGTTTAATGAAAACGCAAAACCTCTGTCTGTCTGTGTAATCTGTAATTGCT 719 consensus_7671#1 ------------------------------------------------------------ consensus_7671#0 GTTTGACGGACACCACACACAGCTTTGGGAAGAAGCTTGGTAGGAAATTCCTCCCGCATT 779 consensus_7671#1 ------------------------------------------------------------ consensus_7671#0 TCTTCTCCTTCTCGTTGCCCACGCTTTATCCCCACTTAGCTTAATTTGTGTTCTCGCGCC 839 consensus_7671#1 ------------------------------------------------------------ consensus_7671#0 ATGTACATAGTAGAGACACGCAAAGTGAGATTCACCGTACACAAATACACAATCACACAG 899 consensus_7671#1 ------------------------------------------------------------ consensus_7671#0 ACCTATTTTGATGAGCAATCGAGAGCAGTTTCTAGGGTTTTTCGGTAGTTTGTCGCGTGT 959 consensus_7671#1 ------------------------------------------------------------ consensus_7671#0 CGTCGTGCAGTAGCTAGCAGGAAGTAAAAAGGCACCACACCACACTATCTTATGCACAGA 1019 consensus_7671#1 ------------------------------------------------------------ consensus_7671#0 GGCGTTATAACAGACCCTAGGGTTGGTAAAACCCTCCTATTGCTGCTGCAACTTAGCGTA 1079 consensus_7671#1 ------------------------------------------------------------ consensus_7671#0 GCGTGAGAAGAAAACGAGAGCCTTAGCCGTGTAAATGTGTGTATGATAGTAACTGTAATC 1139 consensus_7671#1 ------------------------------------------------------------ consensus_7671#0 TTAAATGGGCAGACCGTCTATCGTGTCGCTATAAAAAAAAGAGCGTGAAAGGAATTGGTG 1199 consensus_7671#1 ------------------------------------------------------------ consensus_7671#0 GGAAC 1204 consensus_7671#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||