These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7677#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1627 fasta sequence [CCGGTGAGCTGCAAGCCTGGAACAATCCGCCGGAGAAGGGCGACGGTAACGTTGAAACGGAGGAAGGCGTGCCGCTGCGCAATCAGGCCGCCGCGGTCAAGTAAACAGCGACACGGCACACAACCGTGGCCGCCGTGTGTTTGTGTGTGTGTGTGTGGGTGTGTCCGTTTTCTCTTACATACGTCAGCAGCAAACGGTGGGGATGGTGGCGGCGGTGCTGGTGCTATATTTGGCCGATTAGAGAGAGGTCAAACGAAGCGGCAGCAAAAGCAGTAAGATTCTCTATTTTAAAAGAGGCCAAACAGTTAGCCGCTGCTCTTAACTCCCCTCAGCAAAAACGGCAGAGGATTTTTTTGTGAAAAAACCCCGAATGTCGTACATTTATGCGTGTGCGTGCGCGTGTTTCGTAGTAAAAGAAGACACATTAAAGGAGGAAGAGCGATAGAGGGATACAGAGAGGAGATTTGTCGTAGCATTTAATAACTTATTGTTTT--AAAAGCAACCA----CCCC----CCCCCCCCGCATCTATCGAATCACCCGGAAATGCTGTGCCTCGCGTGCCGAGAGTGTGCAAATGCTGTTTTTTTAGTATTTTGTAGCCAATTACAGCGTTAATAGGTGTGTAGAGCAATGAGTAGGAAATAGATCAGCGGAGATAGTGGTTTTTAATCCAGC-TTTTTTCTGTTTTTGGTAGTAGAAGCAAATTGGGGGGAAAACATCATCAGGTACGACACACACTCAGAAGAAAAAAAACCACGACCACACAGGAAAAGAAGGTGTAGGACCTCTTTTAGAGGGTACAAGACAGAGGAACGGAAGCGAAGTATCTGATTGATTCAGGGGGTTTGACTTAATTTTTAAAATGTACAAAAAGCGTAAT--TGTGTGTGTGTGTGCTTATGTGAAGAAGGGCGTGGTGCAGTGTGGCGTGCGTGCGTCACTAACGGTCGTCATGAGAGGAGTGAACGATTTTCATGTTTTAATGAAAATGGTGCAATCGTAACGAATGCGAGTATATGAACATGACCGGAAAGAGCTGCTTGCTGTGTTGGGCCTGTGGAAGCGGAACCGATCCAGCGGGGGCCTCTCCTCAAGACTTCTTTCCATCTCAGTACGAACG-GGGGG-GGC-GTCCACCGAATGTCACACTGTGAGTAGCTTCAC--ACACAAAAACCAATCCATCACACATGTGCTTTCCCAACGAATGGTGGGGCAACTGTTAACAGGAATAGATTTCTATAAATGTGCCTTTTTTTACTAAGAACTCTTTGATATCGCGTGTGGGGAGCGAAGGAATCTTGTTAAAGCTACTTAGCGTACAGGTTTAGATGCGTGCGTGTGTATATGTACGTAAAC--A--TGTGTGTATGTTTAGGTCGAATCATGATGCTAATCAATCTACTTAAACTTTACAGAGACACGACGGTACTTGATATTTTATTTACAATGTGTTTTTCCCCATTTTTTCTCTCTCTTTCCTTTCTCGTGTACCAATAATATACATACCCCCTAAGCGCGTGTACTGAACTCATTTTAAACAGATAGAAAAACTGAACAATAAAGTAACTGTGAACGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCGCCGCTCGCATCTAGAACAGCGG] [+] EMBL BM587409 [CCGGTGAGCTGCAAGCCTGGAACAATCCGCCGGAGAAGGGCGACGGTAACGTTGAAACGGAGGAAGGCGTGCCGCTGCGCAATCAGGCCGCCGCGGTCAAGTAAACAGCGACACGGCACACAACCGTGGCCGCCGTGTGTTTGTGTGTGTGTGTGTGGGTGTGTCCGTTTTCTCTTACATACGTCAGCAGCAAACGGTGGGGATGGTGGCGGCGGTGCTGGTGCTATATTTGGCCGATTAGAGAGAGGTCAAACGAAGCGGCAGCAAAAGCAGTAAGATTCTCTATTTTAAAAGAGGCCAAACAGTTAGCCGCTGCTCTTAACTCCCCTCAGCAAAAACGGCAGAGGATTTTTTTGTGAAAAAACCCCGAATGTCGTACATTTATGCGTGTGCGTGCGCGTGTTTCGTAGTAAAAGAAGACACATTAAAGGAGGAAGAGCGATAGAGGGATACAGAGAGGAGATTTGTCGTAGCATTTAATAACTTATTGTTTTAAAAAAGCAACCA CCCCCCCACCCCCCCCGCATCTATCGAATCACCCGGAAATGCTGTGCCTCGCGTGCCGAGAGCGT ] [+] EMBL BX616151 [ CGTAGTAAAAGAAGACACATTAAAGGAGGAAGAGCGATAGAGGGATACAGAGAGGAGATTTGTCGTAGCATTTAATAACTTATTGTTTT AAAAGCAACCACCCCCCCC CCCCCCCCGCATCTATCGAATCACCCGGAAATGCTGTGCCTCGCGTGCCGAGAGTGTGCAAATGCTGTTTTTTTAGTATTTTGTAGCCAATTACAGCGTTAATAGGTGTGTAGAGCAATGAGTAGGAAATAGATCAGCGGAGATAGTGGTTTTTAATCCAGC TTTTTTCTGTTTTTGGTAGTAGAAGCAAATTGGGGGGAAAACATCATCAGGTACGACACACACTCAGAAGAAAAAAAACCACGACCACACAGGAAAAGAAGGTGTAGGACCTCTTTTAGAGGGTACAAGACAGAGGAACGGAAGCGAAGTATCTGATTGATTCAGGGGGTTTGACATAATTTTTAAAATGTACAAAAAGCGTAAT TGTGTGTGTGTGTGCTTATGTGAAGAAGGGCGTGGTGCAATGTGGCGTGCGTGCGTC ] [+] EMBL BM607827 [ ccgGCATTTAATAACTTATTGTTTT AAAAGCAACCA CCCC CCCCCCCCGCATCTATCGAATCACCCGGAAATGCTGTGCCTCGCGTGCCGAGAGTGTGCAAATGCTGTTTTTTTAGTATTTTGTAGCCAATTACAGCGTTAATAGGTGTGTAGAGCAATGAGTAGGAAATAGATCAGCGGAGATAGTGGTTTTTAATCCAGCTTTTTTTCTGTTTTTGGTAGTAGAAGCAAATTGGGGGGAAAACATCATCAGGTACGACACACACTCAGAAGAAAAAAAACCACGACCACACAGGAAAAGAAGGTGTAGGACCTCTTTTAGAGGGTACAAGACAGAGGAACGGAAGCGAAGTATCTGATTGATTCAGGGGGTTTGACTTAATTTTTAAAATGTACAAAAAGCGTAATTGTGTGTGTGTGTGTGCTTATGTGAAGAAGGGCGTGGTGCAGTGTGGCGTGCGTGCGTCACTAACGGTCGTCATGAGAGGAGTGAACGATTTTCATGTTTTAATGAAAATGGTGCAATCGTAACGAATGCGAGTATATGAACATGACCGGAAAGAGCTGCTTGCTGTGTTGGGCCTGTGGAAGCGGAACCGAT ] [+] EMBL BX609581 [ GGTACAAGACAGAGGAACGGAAGCGAAGTATCTGATTGATTCAGGGGGTTTGACATAATTTTTAAAATGTACAAAAAGCGTAAT TGTGTGTGTGTGTGCTTATGTGAAGAAGGGCGTGGTGCAGTGTGGCGTGCGTGCGTCACTAACGGTCGTCAAGAGAGGAGAGAACGATTTTCATGTTTTAATGAAAATGGTGCAATCGTAACGAATGCGAGTACATGAACATGACCGGAAAGAGCTGCTTGCTGTGTTGGGCCTGTGGAAGCGGAACCGATCCAGCGGGGGCCTCTCCTCAAGACTTCTTTCCATCTCAGTACGAACGCGGGGGCGGCTGTCCACCGAATGTCACACTGCGAGTAGCTTCGC ACACAAAAACCAATCCATCACACATGTGCTTTCCCAACGAATGGTGGGGCAACTGTTAACAGGAATAGATTTCTATAAATGTGCCTTTTTTTACTAAGAACTCTTTGATATCGCGTGTGGGGAGCGAAGGAATCTTGTTAAAGCTACTTAGCGTACAGGTTTAGATGCGTGCGTGTGTATATGTACGTAAAC A TGTGTGTATGTTTAGGTCGAATCATGAAGCTAATCAATCTACTTAAACTTTACAGAGACACGACGGTACTTGATATTTTAT ] [+] EMBL BM637252 [ ccgACGGAAGCGAAGTATCTGATTGATTCAGGGGGTTTGACTTAATTTTTAAAATGTACAAAAAGCGTAAT TGTGTGTGTGTGTGCTTATGTGAAGAAGGGCGTGGTTCAGTGTGGCGTGTGTGCGTCACTAACGGTCGTCATGAGAGGAGTGAACGATTTTCATGTTTTAATGAAAATGGTGCAATCGTAACGAATGCGAGTATATGAACATGACCGGAAAGAGCTGCTTGCTGTGTTGGGCCTGTGGAAGCGGAACCGATCCAGCGGGGGCCTCTCCTCAAGACTTCTTTCCATCTCAGTACGAACG GGGGG GAC GTCCACCGAATGTCACACTGTGAGTAGCTTCACATACACAAAAACCAATCCATCACACATGTGCTTTCCCAACGAACGGTGGGGCAACTGTTAACAGGAATAGATTTCTATAAATGTGCCTTTTTTTACTAAGAACTCTTTGATATCGCGTGTGGGGAGCGAAGGAATCTTGTTAAAGCTACTTAGCGTACAGGTTTAGATGCGTGCGTGTGTATGTGTGCGTAAAC A TGTGTGTATGTTTAGGTCGAATCATGATGCTAATCAATCTACTTAAACTTTACAGAGACACGACGGTACTTGATATTTTATTTACAATGTGTTTTTCCCCATTTTTTCTCTCTCTTTCCTTTCTCGT ] [+] EMBL BM630436 [ ccGATTGATTCAGGGGGTTTGACTTAATTTTTAAAATGTACAAAAAGCGTAATTGTGTGTGTGTGTGTGCTTATGTGAAGAAGGGCGTGGTGCAGTGTGGCGTGCGTGCGTCTCTAACGGTCGTCATGAGAGGAGTGAACGATTTTCATGTTTTAATGAAAATGGTGCAATCGTAACGAATGCGAGTATATGAACATGACCGGAAAGAGCTGCTTGCTGTGTTGGGCCTGTGGAAGCGGAACCGATCCAGCGGGGGCCTCTCCTCAAGACTTCTTTCCATCTCAGTACGAAC CGGGG GGC GGCCACCGAATGTCACACTGTGAGTAGCTTCAC ACACAAAAACCAATCCATCACACATGTGCTTTCCCAACGAATGGTGGGGCAACTGTTAACAGGAATAGATTTCTATAAATGTGCCTTTTTTTACTAAGAACTCTTTGATATCGCGTGTGGGGAGCGAAGGAATCTTGTTAAAGCTACTTAGTGTACAGGTTCAGATGCGTGCGTGTGTATATGTACGTAAAC ATGTGTGTGTATGTTTAGGACAAATCATGATGCTAATCAATCTACTTAAACTTTACAGAGACACGACGGTACTTGATATTTTATTTACAATGT ] [-] EMBL BM611979 [ AACGAACGGTGAGGCAACTGTTAACAGGAATAGATTTTTATAAATGTGCCTTTTTTTACTAAGAACTCTTTGATATCGCGTGTGGGGAGCGAAGGAATTTTGTTAAAGCTACTTAGCGTACAGGTTTAGATGCGTGCGTGTGTATATGTACGTAAACGTG TGTGTGTATGTTTAGGTCGAATCATGATGCTAATCAATTTACTTAAACTTTACAGAGACCCGACGGTACTTGATATTTTATTTACAATGTGTTTTCCCCCATTTTTTCTCTCTCTTT CTTTCTCGGGTACCAATAATATACATACCCCCTAAGCGCGTGTACTGAACTCATTTTAAACAGATAGAAAAACTGAACAATAAAGTAACTGTGAACGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCGCCGCTCGCATCTAGAACAGCGG] consensusID : consensus_7677#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 412 fasta sequence [ATCGCCGAGTTTGTGTGTGTGCTTATGTGAAGAAGGGCGTGGTTCAGTGTGGCGTGTGTGCGTCACTAACGGTCGTCATGAGAGGAGTGAACGATTTTCATGTTTTAATGAAAATGGTGCAATCGTAACGAATGCGAGTATATGAACATGACCGGAAAGAGCTGCTTGCTGTGTTGGGCCTGTGGAAGCGGAACCGATCCAGCGGGGGCCTCTCCTCAAGACTTCTTTCCATCTCAAGCGTACCGAATACCAGCTTCTTAATATCGACGATGGTTTCCTGAACCTGATGAATGAAAACGGCGACAGCAAGGACGACGTCAAGCTCCCCGACGGCGAGCTCGGTGACAGGATCCAGACCATGTTTGACGATGTGCAAGGACTGCAACGTTATCATCCTCGCTGTCATGGGTGA] [+] EMBL AL930795 [ATCGCCGAGTTTGTGTGTGTGCTTATGTGAAGAAGGGCGTGGTTCAGTGTGGCGTGTGTGCGTCACTAACGGTCGTCATGAGAGGAGTGAACGATTTTCATGTTTTAATGAAAATGGTGCAATCGTAACGAATGCGAGTATATGAACATGACCGGAAAGAGCTGCTTGCTGTGTTGGGCCTGTGGAAGCGGAACCGATCCAGCGGGGGCCTCTCCTCAAGACTTCTTTCCATCTCAAGCGTACCGAATACCAGCTTCTTAATATCGACGATGGTTTCCTGAACCTGATGAATGAAAACGGCGACAGCAAGGACGACGTCAAGCTCCCCGACGGCGAGCTCGGTGACAGGATCCAGACCATGTTTGACGATGTGCAAGGACTGCAACGTTATCATCCTCGCTGTCATGGGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7677#0 CCGGTGAGCTGCAAGCCTGGAACAATCCGCCGGAGAAGGGCGACGGTAACGTTGAAACGG 60 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 AGGAAGGCGTGCCGCTGCGCAATCAGGCCGCCGCGGTCAAGTAAACAGCGACACGGCACA 120 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 CAACCGTGGCCGCCGTGTGTTTGTGTGTGTGTGTGTGGGTGTGTCCGTTTTCTCTTACAT 180 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 ACGTCAGCAGCAAACGGTGGGGATGGTGGCGGCGGTGCTGGTGCTATATTTGGCCGATTA 240 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 GAGAGAGGTCAAACGAAGCGGCAGCAAAAGCAGTAAGATTCTCTATTTTAAAAGAGGCCA 300 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 AACAGTTAGCCGCTGCTCTTAACTCCCCTCAGCAAAAACGGCAGAGGATTTTTTTGTGAA 360 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 AAAACCCCGAATGTCGTACATTTATGCGTGTGCGTGCGCGTGTTTCGTAGTAAAAGAAGA 420 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 CACATTAAAGGAGGAAGAGCGATAGAGGGATACAGAGAGGAGATTTGTCGTAGCATTTAA 480 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 TAACTTATTGTTTTAAAAGCAACCACCCCCCCCCCCCGCATCTATCGAATCACCCGGAAA 540 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 TGCTGTGCCTCGCGTGCCGAGAGTGTGCAAATGCTGTTTTTTTAGTATTTTGTAGCCAAT 600 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 TACAGCGTTAATAGGTGTGTAGAGCAATGAGTAGGAAATAGATCAGCGGAGATAGTGGTT 660 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 TTTAATCCAGCTTTTTTCTGTTTTTGGTAGTAGAAGCAAATTGGGGGGAAAACATCATCA 720 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 GGTACGACACACACTCAGAAGAAAAAAAACCACGACCACACAGGAAAAGAAGGTGTAGGA 780 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 CCTCTTTTAGAGGGTACAAGACAGAGGAACGGAAGCGAAGTATCTGATTGATTCAGGGGG 840 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 TTTGACTTAATTTTTAAAATGTACAAAAAGCGTAATTGTGTGTGTGTGTGCTTATGTGAA 900 consensus_7677#1 ----------------------------ATCGCCGA-GTTTGTGTGTGTGCTTATGTGAA 31 * ** ** ******************** consensus_7677#0 GAAGGGCGTGGTGCAGTGTGGCGTGCGTGCGTCACTAACGGTCGTCATGAGAGGAGTGAA 960 consensus_7677#1 GAAGGGCGTGGTTCAGTGTGGCGTGTGTGCGTCACTAACGGTCGTCATGAGAGGAGTGAA 91 ************ ************ ********************************** consensus_7677#0 CGATTTTCATGTTTTAATGAAAATGGTGCAATCGTAACGAATGCGAGTATATGAACATGA 1020 consensus_7677#1 CGATTTTCATGTTTTAATGAAAATGGTGCAATCGTAACGAATGCGAGTATATGAACATGA 151 ************************************************************ consensus_7677#0 CCGGAAAGAGCTGCTTGCTGTGTTGGGCCTGTGGAAGCGGAACCGATCCAGCGGGGGCCT 1080 consensus_7677#1 CCGGAAAGAGCTGCTTGCTGTGTTGGGCCTGTGGAAGCGGAACCGATCCAGCGGGGGCCT 211 ************************************************************ consensus_7677#0 CTCCTCAAGACTTCTTTCCATCTCAGTACGAACGGGGGGGGCGTCCACCGAATGTCACAC 1140 consensus_7677#1 CTCCTCAAGACTTCTTTCCATCTCAA-GCGTACCGAATAC-CAGCTTCTTAATATCG-AC 268 ************************* ** ** * * * * *** ** ** consensus_7677#0 TGTGAGT-----AGCTTCACACACAAAAACCAATCCATCAC-----ACATGTGCTTTCCC 1190 consensus_7677#1 GATGGTTTCCTGAACCTGATGAATGAAAACGGCGACAGCAAGGACGACGTCAAGCTCCCC 328 ** * * * * * * ***** ** ** ** * * *** consensus_7677#0 AACGAATGGTGGGGCAACTGTTAACAGGAATAGATTTCTATAAATGTGCCTTTTTTTACT 1250 consensus_7677#1 GACGGCGAGCTCGGTGACAGG-ATCCAGACCATGTTTGACGATGTGCAAGGACTGCAACG 387 *** * ** ** * * * ** * *** * ** * ** consensus_7677#0 AAGAACTCTTTGATATCGCGTGTGGGGAGCGAAGGAATCTTGTTAAAGCTACTTAGCGTA 1310 consensus_7677#1 TTATCATCCTCGCTGTCATGGGTGA----------------------------------- 412 ** * * * ** * *** consensus_7677#0 CAGGTTTAGATGCGTGCGTGTGTATATGTACGTAAACATGTGTGTATGTTTAGGTCGAAT 1370 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 CATGATGCTAATCAATCTACTTAAACTTTACAGAGACACGACGGTACTTGATATTTTATT 1430 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 TACAATGTGTTTTTCCCCATTTTTTCTCTCTCTTTCCTTTCTCGTGTACCAATAATATAC 1490 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 ATACCCCCTAAGCGCGTGTACTGAACTCATTTTAAACAGATAGAAAAACTGAACAATAAA 1550 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 GTAACTGTGAACGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCGCCGCT 1610 consensus_7677#1 ------------------------------------------------------------ consensus_7677#0 CGCATCTAGAACAGCGG 1627 consensus_7677#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||