These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 740 fasta sequence [TGCCGGCATTACTGCCGTCCACCGTGCAGACGCCGCTCGGCACCACCGAGATGGTGCGATGGAAATCGAAGCGACAGAAAATGTACACTTCCCATTCCCGGGGAGGGAAAATCCATTCTTTCTGTTTCCTTGCTGTATCTTAGATCCAATTAGATTAGTGGGCCCTCTCACCCTCCTCCTACCAAAAGTATGTTCCAACCAGGCACCGGTTTCGGACTAATGTTTGCTCTGTTTTTCATTGCCTTCTAGTGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAAAAGCAGGAAAAGAGCGCGGCCGCGGCCCAGGCCACCGATGGCGGGCAGGTGGACAAGAAGCAGCCGGCCAAGGAGAACCTGGACGAGATTTCGCCGAACGAGTACTTCAAGCTGCGCAGTGCGGCCGTCGCCGAGCTGAAGAAGAGCCCGGACACGCACCCGTACCCGCACAAGTTCAGCGTGACCGTCTCGCTCGGCGAGTTCATCGAGCGGTACAGCGGGCTGCAGGACGGCGAAACGCTCGACGATGTGACGGTGAGCGTGGCGGGCCGGGTGCACGCGATCCGCGAGTCCGGCGTCAAGCTGATCTTCTTCGACCTGCGC-GGCGAGGGCCTGAAGCTGCAGGTGATGGCGAACGCGAAGGCGTACGAGAGCGAGCAGCTGTTCTTCGAGGAGACGGCCCGGTTGCGGCGCGGCGACATCATCGGCGTGACCGGCGTGCCGGGCA] [+] EMBL BX616479 [TGCCGGCATTACTGCCGTCCACCGTGCAGACGCCGCTCGGCACCACCGAGATGGTGCGATGGAAATCGAAGCGACAGAAAATGTACACTTCCCATTCCCGGGGAGGGAAAATCCATTCTTTCTGTTTCCTTGCTGTATCTTAGATCCAATTAGATTAGTGGGCCCTCTCACCCTCCTCCTACCAAAAGTATGTTCCAACCAGGCACCGGTTTCGGACTAATGTTTGCTCTGTTTTTCATTGCCTTCTAGTGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAAAAGCAGGAAAAGAGCGCGGCCGCGGCCCAGGCCACCGATGGCGGGCAGGTGGACAAGAAGCAGCCGGCCAAGGAGAACCTGGACGAGATTTCGCCGAACGAGTACTTCAAGCTGCGCAGTGCGGCCGTCGCCGAGCTGAAGAAGAGCCCGGACACGCACCCGTACCCGCACAAGTTCAGCGTGACCGTCTCGCTCGGCGAGTTCATCGAGCGGTACAGCGGGCTGCAGGACGGCGAAACGCTCGACGATGTGACGGTGAGCGTGGGCGGCCGGGTGCACGCGATCCGCGAGTCCGGCGTCAAGCTGATCTTCTTCGACCTGCGCGGGCGAGGGCC ] [+] EMBL AGA283964 [ CACCGATGGCGGGCAGGTGGACAAGAAGCAGCCGGCCAAGGAGAACCTGGACGAGATTTCGCCGAACGAGTACTTCAAGCTGCGCAGTGCGGCCGTCGCCGAGCTGAAGAAGAGCCCGGACACGCACCCGTACCCGCACAAGTTCAGCGTGACCGTCTCGCTCGGCGAGTTCATCGAGCGGTACAGCGGGCTGCAGGACGGCGAAACGCTCGACGATGTGACGGTGAGCGTGGCGGGCCGGGTGCACGCGATCCGCGAGTCCGGCGTCAAGCTGATCTTCTTCGACCTGCGC GGCGAGGGCCTGAAGCTGCAGGTGATGGCGAACGCGAAGGCGTACGAGAGCGAGCAGCTGTTCTTCGAGGAGACGGCCCGGTTGCGGCGCGGCGACATCATCGGCGTGACCGGCGTGCCGGGCA] [+] EMBL AGA280973 [ CACCGATGGCGGGCAGGTGGACAAGAAGCAGCCGGCCAAGGAGAACCTGGACGAGATTTCGCCGAACGAGTACTTCAAGCTGCGCAGTGCGGCCGTCGCCGAGCTGAAGAAGAGCCCGGACACGCACCCGTACCCGCACAAGTTCAGCGTGACCGTCTCGCTCGGCGAGTTCATCGAGCGGTACAGCGGGCTGCAGGACGGCGAAACGCTCGACGATGTGACGGTGAGCGTGGCGGGCCGGGTGCACGCGATCCGCGAGTCCGGCGTCAAGCTGATCTTCTTCGACCTGCGC GGCGAGGGCCTGAAGCTGCAGGTGATGGCGAACGCGAAGGCGTACGAG ] consensusID : consensus_7686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 497 fasta sequence [AGAAAGCAAGGCAACCGAAACGGTAAATTAAAGTTCTGCTGCCACTGCATCACCTCCATACAAAAAAACAGTACAATGGCTGACGCAAAGCAGGGCGAAGAAAAGCTATCCAAGAAGTAAGTGGGAAACGAATCTCTTTCTCTCTGCTTTCTTTTCTTTTTCTTGCCTTCTCGCCGTAGCCGTGGCGCGCGGCACCCTCTCCCCCCCACCGGTCACCGGTCGTGCGGACGTGTAGGCCTCGTGTGCGTGTGTGTGTGTTTGCGAAAAGTGTGCGAAAAGATGCTGCTGGCGACGGTGCGGCAGCTGGTACGGCGAGCCGGTGTGACGGCGTGGACGGTGCACCAG-------GGTTGGCGGCGGCCCCACCACTGCCGGCATTACTGCCGTCCACCGTGCAGACGCCGCTCGGCACCACCGAGACGGTGCGATGGAAATCGAAGCGACAGAAAATTGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAAAAGCAG] [+] EMBL AGA285198 [AGAAAGCAAGGCAACCGAAACGGTAAATTAAAGTTCTGCTGCCACTGCATCACCTCCATACAAAAAAACAGTACAATGGCTGACGCAAAGCAGGGCGAAGAAAAGCTATCCAAGAAGTAAGTGGGAAACGAATCTCTTTCTCTCTGCTTTCTTTTCTTTTTCTTGCCTTCTCGCCGTAGCCGTGGCGCGCGGCACCCTCTCCCCCCCACCGGTCACCGGTCGTGCGGACGTGTAGGCCTCGTGTGCGTGTGTGTGTGTTTGCGAAAAGTGTGCGAAAAGATGCT ] [+] EMBL AGA285059 [ GCCACTGCATCACCTCCATACAAAAAAACAGTACAATGGCTGACGCAAAGCAGGGCGAAGAAAAGCTATCCAAGAAGTAAGTGGGAAACGAATCTCTTTCTCTCTGCTTTCTTTTCTTTTTCTTGCCTTCTCGCCGTAGCCGTGGCGCGCGGCACCCTCTCCCCCCCACCGGTCACCGGTCGTGCGGACGTGTAGGCCTCGTGTGCGTGTGTGTGTGTTTGCGAAAAGTGTGCGAAAAGATGCTGCTGGCGACGGTGCGGCAGCTGGTACGGCGAGCCGGTGTGACGGCGTGGACGGTGCACCAGGGCGGCCGGTTGGCGGCGGCCCCACCACTGCCGGCATTACTGCCGTCCACCGTGCAGACGCCGCTCGGCACCACCGAGACGGTGCGATGGAAATCGAAGCGACAGAAAATTGAGCTGAAGCGCCGGC ] [-] EMBL AGA283768 [ CTCCATACAAAAAAACAGTACAATGGCTGACGCAAAGCAGGGCGAAGAAAAGCTATCCAAGAAGTAAGTGGGAAACGAATCTCTTTCTCTCTGCTTTCTTTTCTTTTTCTTGCCTTCTCGCCGTAGCCGTGGCGCGCGGCACCCTCTCCCCCCCACCGGTCACCGGTCGTGCGGACGTGTAG GTGCGTGTGTGTGTGTTTGCGAAAAGTGTGCGAAAAGATGCTGCTGGCGACGGTGCGGCAGCTGGTACGGCGAGCCGGTGTGACGGCGTGGACGGTGCACCAG GGTTGGCGGCGGCCCCACCACTGCCGGCATTACTGCCGTCCACCGTGCAGACGCCGCTCGGCACCACCGAGACGGTGCGATGGAAATCGAAGCGACAGAAAATTGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAAAAGCAG] [-] EMBL AGA283904 [ GCTATCCAAGAAGTAAGTGGGAAACGAATCTCTTTCTCTCTGCTTTCTTTTCTTTTTCTTGCCTTCTCGCCGTAGCCGTGGCGCGCGGCACCCTCTCCCCCCCACCGGTCACCGGTCGTGCGGACGTGTAG GTGCGTGTGTGTGTGTTTGCGAAAAGTGTGCGAAAAGATGCTGNTGGCGACGGTGCGGCAGCTGGTACGGCGAGCCGGTGTGACGGCGTGGACGGTGCACCAG GGTTGGCGGCGGCCCCACCACTGCCGGCATTACTGCCGTCCACCGTGCAGACGCCGCTCGGCACCACCGAGACGGTGCGATGGAAATCGAAGCGACAGAAAATTGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAAAAGCAG] consensusID : consensus_7686#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence [CACACATACACGTGTACGTCAGTCCGTCCGGCATGGTCGCATGGTAAATCTACGTTAGTGCTTTCTGGGAACGAGCAAGAGCAAAAAAAAGGGAAGGCTGCCACATATATAAATATCGGCATCCGGCGGAAAGCAGAAAGCAAGGCAACCGAAACGGTAAATTAAAGTTCTGCTGCCACTGCATCACCTCCATACAAAAAAACAGTACAATGGCTGACGCAAAGCAGGGCGAAGAAAAGCTATCCAAGAATGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAAAAGCAGGAAAAGAGCGCGGCCGCGGCCCAGGCCACCGATGGCGGGCAGGTGGACAAGAAGCAGCCGGCCAAGGAGAACCTGGACGAGATTTCGCCGAACGAGTACTTCAAGCTGCGCAGTGCGGCCGTCGCCGAGCTGAAGAAGAGCCCGGACACGCACCCGTACCCGCACAAGTTCAGCGTGACCGTCTCGCTCG] [+] EMBL BX606874 [CACACATACACGTGTACGTCAGTCCGTCCGGCATGGTCGCATGGTAAATCTACGTTAGTGCTTTCTGGGAACGAGCAAGAGCAAAAAAAAGGGAAGGCTGCCACATATATAAATATCGGCATCCGGCGGAAAGCAGAAAGCAAGGCAACCGAAACGGTAAATTAAAGTTCTGCTGCCACTGCATCACCTCCATACAAAAAAACAGTACAATGGCTGACGCAAAGCAGGGCGAAGAAAAGCTATCCAAGAATGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAAAAGCAGGAAAAGAGCGCGGCCGCGGCCCAGGCCACCGATGGCGGGCAGGTGGACAAGAAGCAGCCGGCCAAGGAGAACCTGGACGAGATTTCGCCGAACGAGTACTTCAAGCTGCGCAGTGCGGCCGTCGCCGAGCTGAAGAAGAGCCCGGACACGCACCCGTACCCGCACAAGTTCAGCGTGACCGTCTCGCTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7686#0 ----TGCCGGCAT-TACTGCCGTCCACCGTGCAGACGCCGCTCGGCACCACCGAGATGGT 55 consensus_7686#2 CACACATACACGTGTACGTCAGTCCGTCCGGCATG-GTCGCATGGTAAATCTACGTTAGT 59 consensus_7686#1 --------------------AGAAAGCAAGGCAAC--CGAAACGGTAAATTAAAGTTC-T 37 * *** ** * * * * consensus_7686#0 GCGATGGAAATCGAAGCGACAGAAAATGTACACTTCCCATTCCCGGGGAGGGAAAATCCA 115 consensus_7686#2 GCTTTCTGGGAACGAGCAAGAGCAAAAAAAAGGGAAGGCTGCCACATATATAAATATCGG 119 consensus_7686#1 GCTGCCACTGCATCACCTCCATACAAAAAAACAGTACAATGGCTGACGCA-AAGCAGGGC 96 ** * * * ** * * * * * consensus_7686#0 T-TCTTTCTGTTTCCTTGCTGTATCTTAGATCCAAT--TAGATTAGTGGGCCCTCTCACC 172 consensus_7686#2 CATCCGGCGGAAAGCAGAAAGCAAGGCAACCGAAACGGTAAATTAA--AGTTCTGCTGCC 177 consensus_7686#1 GAAGAAAAGCTATCCAAGAAGTAAGTGGGAAACGAATCTCTTTCTCTCTGCTTTCTTTTC 156 * * * * * * * * * consensus_7686#0 CTCCTCCTACCAAAAGTATGTTCCAACCAGGCACCGGTTTCGGACTAATGTTTGCTCTGT 232 consensus_7686#2 ACTGCATCACCTCCA-TACAAAAAAACAGTACAATGGCT---GACGCAAAGCAGGGCGAA 233 consensus_7686#1 TTTTTCTTGCCTTCTCGCCGTAGCCGTGGCGCG-CGGC-----ACCC-TCTCCCCCCCAC 209 ** * ** ** * consensus_7686#0 TTTTCATTGCCTTCTAGTGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAA 292 consensus_7686#2 GAAAAGCTATCCAAGAATGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAA 293 consensus_7686#1 CGGTCACCGGTCGTGCGGACGTGTAGGCCTCGTGTGCGTGTGTGTGTGTTTGCGAAAAGT 269 * * ** ** * * * * * ** consensus_7686#0 AAGCAGGAAAAGAGCGCGGCCGCGGCCCAGGCCACCGAT--GGCGGGCAGGTGGACAAGA 350 consensus_7686#2 AAGCAGGAAAAGAGCGCGGCCGCGGCCCAGGCCACCGAT--GGCGGGCAGGTGGACAAGA 351 consensus_7686#1 GTGCGAAAAGATGCTGCTGGCGACGGTGCGGCAGCTGGTACGGCGAGCCGGTGTG-ACGG 328 ** ** * ** * ** * *** * * * **** ** **** * * consensus_7686#0 AGCAGCCGGCCAAGGAGAACCTGGACGAGATTTCGCCGA-ACGAGTACTTCAAGC-TGCG 408 consensus_7686#2 AGCAGCCGGCCAAGGAGAACCTGGACGAGATTTCGCCGA-ACGAGTACTTCAAGC-TGCG 409 consensus_7686#1 CGTGGACGGTGCACCAGGGT-TGGCGGCGGCCCCACCACTGCCGGCATTACTGCCGTCCA 387 * * *** * ** *** * * * ** * * * * * * * * consensus_7686#0 CAGTGCGGCCGTCGCCGAGC-TGAAGAAGAGCCCGGACACGCACCCGTACCCGCACAAGT 467 consensus_7686#2 CAGTGCGGCCGTCGCCGAGC-TGAAGAAGAGCCCGGACACGCACCCGTACCCGCACAAGT 468 consensus_7686#1 CCGTGCAGACGCCGCTCGGCACCACCGAGACGGTGCGATGGAAATCGAAGCGACAGAAAA 447 * **** * ** *** ** * *** * * * ** * * ** ** consensus_7686#0 TCAGCGTGACCGTCTCGCTCGGCGAGTTCATCGAGCGGTACAGCGGGCTGCAGGACGGCG 527 consensus_7686#2 TCAGCGTGACCGTCTCGCTCG--------------------------------------- 489 consensus_7686#1 TTGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAAAAGCAG---------- 497 * *** * **** consensus_7686#0 AAACGCTCGACGATGTGACGGTGAGCGTGGCGGGCCGGGTGCACGCGATCCGCGAGTCCG 587 consensus_7686#2 ------------------------------------------------------------ consensus_7686#1 ------------------------------------------------------------ consensus_7686#0 GCGTCAAGCTGATCTTCTTCGACCTGCGCGGCGAGGGCCTGAAGCTGCAGGTGATGGCGA 647 consensus_7686#2 ------------------------------------------------------------ consensus_7686#1 ------------------------------------------------------------ consensus_7686#0 ACGCGAAGGCGTACGAGAGCGAGCAGCTGTTCTTCGAGGAGACGGCCCGGTTGCGGCGCG 707 consensus_7686#2 ------------------------------------------------------------ consensus_7686#1 ------------------------------------------------------------ consensus_7686#0 GCGACATCATCGGCGTGACCGGCGTGCCGGGCA 740 consensus_7686#2 --------------------------------- consensus_7686#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||