These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7695#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 798 fasta sequence [TCGCCCGAGGTTAACGAAA-CAACTTCCCAAAAG-AGCTGCACTGTGCGCAGTTTTTAGTCAATAATAATTAAGTAAAGCTATCCTACGGTCAATAAACTCTACTACTACAATGCCGGCCTACCATTCACAGATAAAGGATTACTCGCAGTCCGTGGGCAATATGGCCATTCTGCCGATCCGGACGCAGGCCCGCGGGCCCGCTCCGGTAAATGCCAGCCTCGAGCAGGACATCATCGACGAAACGCTGTACTACTTCAAGGCGAACGTGTTCTTCCGCACGTACGAGATCAAGTCGGAGGTGGACCGGGTGCTGATCTACATCACGCTTTACGTGACGGAGTGTCTGAAGAAGCTGCAGCGCTGCGCGAACAAAAACCA-GGGCCTGCAGGAAATGTACACGCTGGCCATTTCGCGCTTCGACATTCCGGGCGAGGCGGGCTTTCCGCTGAACGCCGTGTACGCCCGGCCAAACTCACCGGCCGAGGCTGAACTGATGCGACAGTATTTGCAGCAGCTGCGCCAGGAGGTTGGCATTCGCGTGTGCGAGCGCGTCTTTTCCGGCGAGGACGGAAAGCCGAACAAATGGTGGCTCTGCTTCGCCAAGAAGAAGTTCATGGACAAGTCGCTCTCGGGACCGGGCCAGTGAGCCCGGGGAGAGGTCCCTTTTAATTATGTTTATGCATTCGTGTCCCAACTGCTTTTCCGTTTTTACATAGAATAAATTTCGCGTAAGTTCTCTACACGCACGCGTCTTCCGAACAAAAAAAAAAAAAGGCCACATGTTCCCGAGCTTTTTTT] [+] EMBL AL930940 [TCGCCCGAGGTTAACGAAA CAACTTCCCAAAAG AGCTGCACTGTGCGCAGTTTTTAGTCAATAATAATTAAGTAAAGCTATCCTACGGTCAATAAACTCTACTACTACAATGCCGGCCTACCATTCACAGATAAAGGATTACTCGCAGTCCGTGGGCAATATGGCCATTCTGCCGATCCGGACGCAGGCCCGCGGGCCCGCTCCGGTAAATGCCAGCCTCGAGCAGGACATCATCGACGAAACGCTGTACTACTTCAAGGCGAACGTGTTCTTCCGCACGTACGAGATCAAGTCGGAGGTGGACCGGGTGCTGATCTACATCACGCTTTACGTGACAGAGTGTCTGAAGAAGCTGCAGCGCTGCGCGAACAAAAACCAGGGGCCTGCAGGAAATGTACACGCTGGCCATTTCGCGCTTCGACATTCCGGGCGAGGCGGGCTTTCCGCTGAACGCCGTGTACGCCCGGCCAAACTCACCGGCCGAGGCGGAACTGATGCGACAGTATTTGCAGCAGCTGCGCCAAGAGGTTGGCATTCGCGTGTGCG ] [+] EMBL BM609536 [ ccggaaaAACGAAACCAACTTCCCAAAAG AGCTGCACTGTGCGCAGTTTTTAGTCAATAATAATTAAGTAAAGCTATCCTACGCTCAATAAACTCTGCTACTACAATGCCGGCCTACCATTCACAGATAAAGGATTACTCGCAGTCCGTGGGCAATATGGCCATTCTGCCGATCCGGACGCAGGCCCGCGGGCCCGCTCCGGTAAATGCCAGCCTCGAGCAGGACATCATCGACGAAACGCTGTACTACTTCAAGGCGAACGTGTTCTTCCGCACGTACGAGATCAAGTCGGAGGTGGACCGGGTGCTGATCTACATCACGCTTTACGTGACGGAGTGTCTGAAGAAGCTGCAGCGCTGCGCGAACAAAAACCA GGGCCTGCAGGAAATGTACACGCTGGCCATTTCGCGCTTCGACATTCCGGGCGAGGCGGGCTTTCCGCTGAACGCCGTGTACGCCCGGCCAAACTCACCGGCCGAGGCTGAACTGATGCGACAGTATTTGCAGCAGCTGCGCCAGGAGGTTGGCATTCGCGTGTGCGAGCGCGTCTTTTCCGGCGAGGACGGAAAGCCGAACAAATGGTGGCTCTGCTTCGCCAAGAAGAAGTTC ] [+] EMBL CNS08GIC [ tggGAAA CAACTTCCCAAAAGCAGCTGCACTGTGCGCA TTTTTAGTCAATAATAATTAAGTAAAGCTATCCTACGCTCAATAAACTCTACTACTACAATGCCGGCCTACCATTCACAGATAAAGGATTACTCGCAGTCCGTGGGCAATATGGCCATTCTGCCGATCCGGACGCAGGCCCGCGGGCCCGCTCCGGTAAATGCCAGCCTCGAGCAGGACATCATCGACGAAACGCTGTACTACTTCAAGGCGAACGTGTTCTTCCGCACGTACGAGATCAAGTCGGAGGTGGACCGGGTGCTGATCTACATCACGCTTTACGTGACGGAGTGTCTGAAGAAGCTGCAGCGCTGCGCGAACAAAAACCA GGGCCTGCAGGAAATGTACACGCTGGCCATTTCGCGCTTCGACATTCCGGGCGAGGCGGGCTTTCCGCTGAACGCCGTGTACGCCCGGCCAAACTCACCGGCCGAGGCTGAACTGATGCGACAGTATTTGCAGCAGCTGCGCCAGGAGGTTGGCATTCGCGTGTGCGAGCGCGTCTTTTCCGGCGAGGACGGAAAGCCGAACAAATGGTGGCTCTGCTTCGCCAAGAAGAAGTTCATGGACAAGTCGCTCTCGGGACCGGGCCAGTTAGCCCGGGGAGAGGTCCCTTTTAATTATGTTTATGCATTCGTGTCCCAACTGCTTTTCCGTTTTTACATAGAATAAATTTCGCGTAAGTACTCTACACGCACGCGTCTTCCGAACAAAAAAAAAAAAAGGCCACATGTTCCCGAGCTTTTTTT] [+] EMBL BM650782 [ GAAACCAACTTCCCAAAAG AGCTGCACTGTGCGCAGTTTTTAGTCAATAATAATTAAGTAAAGCTATCCTACGGTCAATAAACTCTACTACTACAATGCCGGCCTACCATTCACAGATAAAGGATTACTCGCAGTCCGTGGGCAATATGGCCATTCTGCCGATCCGGACGCAGGCCCGCGGGCCCGCTCCGGTAAATGCCAGCCTCGAGCAGGACATCATCGACGAAACGCTGTACTACTTCAAGGCGAACGTGTTCTTCCGCACGTACGAGATCAAGTCGGAGGTGGACCGGGTGCTGATCTACATCACGCTTTACGTGACAGAGTGTCTGAAGAAGCTGCAGCGCTGCGCGAACAAAAACCA GGGCCTGCAGGAAATGTA ] [+] EMBL BX613506 [ AGTAAAGCTATCCTACGGTCAATAAACTCTACTACTACAATGCCGGCCTACCATTCACAGATAAAGGATTACTCGCAGTCCGTGGGCAATATGGCCATTCTGCCGATCCGGACGCAGGCCCGCGGGCCCGCTCCGGTAAATGCCAGCCTCGAGCAGGACATCATCGACGAAACGCTGTACTACTTCAAGGCGAACGTGTTCTTCCGCACGTACGAGATCAAGTCGGAGGTGGACCGGGTGCTGATCTACATCACGCTTTACGTGACGGAGTGTCTGAAGAAGCTGCAGCGCTGCGCGAACAAAAACCA GGGCCTGCAGGAAATGTACACGCTGGCCATTTCGCGCTTCGACATTCCGGGCGAGGCGGGCTTTCCGCTGAACGCCGTGTACGCCCGGCCAAACTCACCGGCCGAGGCTGAACTGATGCGACAGTATTTGCAGCAGCTGCGCCAGGAGGTTGGCATTCGCGTGTGCGAGCGCGTCTTTTCCGGCGAGGACTGAAAGCCGAACAAATGGTGGCTCTGCTTCGCCAAGAAGAAGTTCATGGACAAGTCGCTCTCGGGACCGGGCCAGTGAGCCCGAGGAGAGGTCCCTTTTAATTATGTTTATGCATTCGTGTCCCAACTGCTTTTCCGTTTTTACATAGAATAAATTTCGCGTAAGTTCTCTACACGCACGCGTCTT ] [+] EMBL BX612570 [ TCAATAAACTCTACTACTACAATGCCGGCCTACCATTCACAGATAAAGGATTACTCGCAGTCCGTGGGCAATATGGCCATTCTGCCGATCCGGACGCAGGCCCGCGGGCCCGCTCCGGTAAATGCCAGCCTCGAGCAGGACATCATCGACGAAACGCTGTACTACTTCAAGGCGAACGTGTTCTTCCGCACGTACTAGATCAAGTCGGAGGTGGACCGGGTGCTGATCTACATCACGCTTTACGTGACGGAGTGTCTGAAGAAGCTGCAGCGCTGCGCGAACAAAAACCA GGGCCTGCAGGAAATGTACACGCTGGCCATTTCGCGCTTCGACATTCCGGGCGAGGCGGGCTTTCCGCTGAACGCTGTGTACGCCCGGCCAAACTCACCGGCCGAGGCTGAACTGATGCGACAGTATTTGCAGCAGCTGCGCCAGGAGGTTGGCATTCGCGTGTGCGAGCGCGTCTTTTCCGGCGAGGACGGAAAGCCGAACAAATGGTGGCTCTGCTTCGCCAAGAAGAAGTTCATGGACAAGTCGCTCTCGGGACCGGGCCAGTGAGCCCGAGGAGAGGTCCCTTTTAATTATGTTTATGCATTCGTGTCCCAACTGCTTTTCCGTTTTTACATAGAATAAATTTCGCG ] [-] EMBL BM655339 [ GAACGCCGTGTACGCCCGGCCAAATTCACCGGCCGAGGCGGAACTGATGCGCCAGTATTTGCAGCAGCTGCGCCAAGAGGTTGGCATTCGCGTGTGCGAGCGCGTCTTTTCCGGCGAGGACGGAAAGCCGAACAAATGGTGGCTTTGCTTTGCCAAGAAGAAGTTCATGGACAAGTCGCTCTCGGGACCGGGCCAGTGAGCCCGGGGAGAGGTCCCTTTTAATTATGTTTATGCATTCGTGTCCCAACTGCTTTTCCGTTTTTACATAGAATAAATTTCGCGTAAGTTCTTTCCA ] consensusID : consensus_7695#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 756 fasta sequence [CTGTTGGCCCACTGGGAAACCAACTTCCCAAAAGAGCTGCACTGTGCGCAGTTTTTAGTCAATAATAATTAAGTAAAGCTATCCTACGCTCAATAAACTCTACTACTACAATGCCGGCCTACCATTAACAGATAAAGGATAACTCGCAGTCCGTGGGCAATATGGCCATTCTGCCGATCCGGACGCAGGCCCGCGGGCCCGCTCCGGTAAATGCCAGCCTCGAGCAGGACATCATCGACGAAACGCTGTACTACTTCAAGGCGAACGTGTTCTTCCGAACGTACGAGATCAAGTCGGAGGTGGACCGGGTGCTGATCTACATCACGCTTTACGTGACGGAGTGTCTGAAGAAGCTGCAGCTGCGCGAACAAAAACCAGGGCCTGCAGGAAATGTACACGCTGGCCTTTTCGCGCTTCGACATTCCGGGCGAGGCGGGCTTTCCGCTGAACGCCGTGTACGCCCGGCCAAACTCACCGGCCGAGGCTGAACTGATGCGACAGTATTTGCAGCAGTGCGCCAGGAGGTTGGAATTCGCGTGTGCGAGCGCGTCTTTTCCGGCGAGGACGGAAAGCCGAACAAATGGTGGCTACTTTCGCCAAGAAGAAGTTCATGGACAAGTCGCTCTCGGGACCGGGCCAGTGAGCCCGGGGAGAGGTCCCTTTTAATTATGTTTATGCATTCGTGTCCCAACTGCTTTTCCGTTTTTACATAGAATAAATTTCGCGTAAGTTCTCTATAACGCACGCGTCTTCCGA] [-] EMBL CNS08GID [CTGTTGGCCCACTGGGAAACCAACTTCCCAAAAGAGCTGCACTGTGCGCAGTTTTTAGTCAATAATAATTAAGTAAAGCTATCCTACGCTCAATAAACTCTACTACTACAATGCCGGCCTACCATTAACAGATAAAGGATAACTCGCAGTCCGTGGGCAATATGGCCATTCTGCCGATCCGGACGCAGGCCCGCGGGCCCGCTCCGGTAAATGCCAGCCTCGAGCAGGACATCATCGACGAAACGCTGTACTACTTCAAGGCGAACGTGTTCTTCCGAACGTACGAGATCAAGTCGGAGGTGGACCGGGTGCTGATCTACATCACGCTTTACGTGACGGAGTGTCTGAAGAAGCTGCAGCTGCGCGAACAAAAACCAGGGCCTGCAGGAAATGTACACGCTGGCCTTTTCGCGCTTCGACATTCCGGGCGAGGCGGGCTTTCCGCTGAACGCCGTGTACGCCCGGCCAAACTCACCGGCCGAGGCTGAACTGATGCGACAGTATTTGCAGCAGTGCGCCAGGAGGTTGGAATTCGCGTGTGCGAGCGCGTCTTTTCCGGCGAGGACGGAAAGCCGAACAAATGGTGGCTACTTTCGCCAAGAAGAAGTTCATGGACAAGTCGCTCTCGGGACCGGGCCAGTGAGCCCGGGGAGAGGTCCCTTTTAATTATGTTTATGCATTCGTGTCCCAACTGCTTTTCCGTTTTTACATAGAATAAATTTCGCGTAAGTTCTCTATAACGCACGCGTCTTCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7695#0 ---TCGCCCGAGGTTAACGAAACAACTTCCCAAAAGAGCTGCACTGTGCGCAGTTTTTAG 57 consensus_7695#1 CTGTTGGCCCA--CTGGGAAACCAACTTCCCAAAAGAGCTGCACTGTGCGCAGTTTTTAG 58 * * ** * * ** ************************************** consensus_7695#0 TCAATAATAATTAAGTAAAGCTATCCTACGGTCAATAAACTCTACTACTACAATGCCGGC 117 consensus_7695#1 TCAATAATAATTAAGTAAAGCTATCCTACGCTCAATAAACTCTACTACTACAATGCCGGC 118 ****************************** ***************************** consensus_7695#0 CTACCATTCACAGATAAAGGATTACTCGCAGTCCGTGGGCAATATGGCCATTCTGCCGAT 177 consensus_7695#1 CTACCATTAACAGATAAAGGATAACTCGCAGTCCGTGGGCAATATGGCCATTCTGCCGAT 178 ******** ************* ************************************* consensus_7695#0 CCGGACGCAGGCCCGCGGGCCCGCTCCGGTAAATGCCAGCCTCGAGCAGGACATCATCGA 237 consensus_7695#1 CCGGACGCAGGCCCGCGGGCCCGCTCCGGTAAATGCCAGCCTCGAGCAGGACATCATCGA 238 ************************************************************ consensus_7695#0 CGAAACGCTGTACTACTTCAAGGCGAACGTGTTCTTCCGCACGTACGAGATCAAGTCGGA 297 consensus_7695#1 CGAAACGCTGTACTACTTCAAGGCGAACGTGTTCTTCCGAACGTACGAGATCAAGTCGGA 298 *************************************** ******************** consensus_7695#0 GGTGGACCGGGTGCTGATCTACATCACGCTTTACGTGACGGAGTGTCTGAAGAAGCTGCA 357 consensus_7695#1 GGTGGACCGGGTGCTGATCTACATCACGCTTTACGTGACGGAGTGTCTGAAGAAGCTGCA 358 ************************************************************ consensus_7695#0 GCGCTGCGCGAACAAAAACCAGGGCCTGCAGGAAATGTACACGCTGGCCATTTCGCGCTT 417 consensus_7695#1 GC--TGCGCGAACAAAAACCAGGGCCTGCAGGAAATGTACACGCTGGCCTTTTCGCGCTT 416 ** ********************************************* ********** consensus_7695#0 CGACATTCCGGGCGAGGCGGGCTTTCCGCTGAACGCCGTGTACGCCCGGCCAAACTCACC 477 consensus_7695#1 CGACATTCCGGGCGAGGCGGGCTTTCCGCTGAACGCCGTGTACGCCCGGCCAAACTCACC 476 ************************************************************ consensus_7695#0 GGCCGAGGCTGAACTGATGCGACAGTATTTGCAGCAGCTGCGCCAGGAGGTTGGCATTCG 537 consensus_7695#1 GGCCGAGGCTGAACTGATGCGACAGTATTTGCAGCAG-TGCGCCAGGAGGTTGGAATTCG 535 ************************************* **************** ***** consensus_7695#0 CGTGTGCGAGCGCGTCTTTTCCGGCGAGGACGGAAAGCCGAACAAATGGTGGCTCTGCTT 597 consensus_7695#1 CGTGTGCGAGCGCGTCTTTTCCGGCGAGGACGGAAAGCCGAACAAATGGTGGCTAC-TTT 594 ****************************************************** ** consensus_7695#0 CGCCAAGAAGAAGTTCATGGACAAGTCGCTCTCGGGACCGGGCCAGTGAGCCCGGGGAGA 657 consensus_7695#1 CGCCAAGAAGAAGTTCATGGACAAGTCGCTCTCGGGACCGGGCCAGTGAGCCCGGGGAGA 654 ************************************************************ consensus_7695#0 GGTCCCTTTTAATTATGTTTATGCATTCGTGTCCCAACTGCTTTTCCGTTTTTACATAGA 717 consensus_7695#1 GGTCCCTTTTAATTATGTTTATGCATTCGTGTCCCAACTGCTTTTCCGTTTTTACATAGA 714 ************************************************************ consensus_7695#0 ATAAATTTCGCGTAAGTTCTCTACA-CGCACGCGTCTTCCGAACAAAAAAAAAAAAAGGC 776 consensus_7695#1 ATAAATTTCGCGTAAGTTCTCTATAACGCACGCGTCTTCCGA------------------ 756 *********************** * **************** consensus_7695#0 CACATGTTCCCGAGCTTTTTTT 798 consensus_7695#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||