These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7699#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 707 fasta sequence [CCGCCCACGCGTCCGTGCAACAGTAGGGTTACCAAGTAATAATCTTTATTAGCTTTCTAGACTCCATGACGGTTTTATGTGTTTGCAGAAAGTGAAGTAATAGAAAATGTTATTTTTTAAAGTATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCTTATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTT-GCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAACAAAACTGCAACGTAGCAAACAGAAAAAAAAAAAAAAAAAAGGGCCACATGCCCCCC] [+] EMBL BM599855 [CCGCCCACGCGTCCGTGCAACAGTAGGGTTACCAAGTAATAATCTTTATTAGCTTTCTAGACTCCATGACGGTTTTATGTGTTTGCAGAAAGTGAAGTAATAGAAAATGTTATTTTTTAAAGTATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCTTATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTT GCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAACAAAACTGCA ] [+] EMBL BM598897 [ ccgCAGTAGGGTTACCAAGTAATAATCTTTATTAGCTTTCTAGACTCCATGACGGTTTTATGTGTTTGCAGAAAGTGAAGTAATAGAAAATGTTATTTTTTAAAGTATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCTTATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCctacg ] [+] EMBL BX628402 [ ACGGCTTTATGTGTTTGCAGAAAGTGAAGTAATAGAAAATGTTATTTTTTAAAGTATTGAAACATCCTTTAGCGCGCGGGATGGTTACATATTCCGTCTTATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGNGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTT GCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAA ] [+] EMBL BM615449 [ ccgCGGTTTTATGTGTTTGCAGAAAGTGAAGTAATAGAAAATGTTATTTTTTAAAGTATTGAAACATCCTTTAGCGCGCGGGATGGGTACGTATTCCGTCTTATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTT GCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAACTA ] [+] EMBL CNS08F33 [ GGTTTTATGTGTTTGCAGAAAGTGAAGTAATAGAAAATGTTATTTTTTAAAGTATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCTTATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGATGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAA GAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTTAACAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAACAAAACTGCAACGTAGCAAACAGAAAAAAAAAAAAAAAAAAGGGCCACATGCCCCCC] consensusID : consensus_7699#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [CCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGGTAAGCCAGCACAAATGACATGGATCCGTAGGAATTAACCTGTGATTTTTACAGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAACAAAACGTATTCCGGGACAGTCCCAATTTCAAAATGGAAATTTAATGTCCAGTCGTAAAAAAAACCCGGGTCCGTGGCAACTCTTCCGTTCCGTAGAACAGTACTCGCCCGG] [-] EMBL BM619194 [CCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGGTAAGCCAGCACAAATGACATGGATCCGTAGGAATTAACCTGTGATTTTTACAGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAACAAAACGTATTCCGGGACAGTCCCAATTTCAAAATGGAAATTTAATGTCCAGTCGTAAAAAAAACCCGGGTCCGTGGCAACTCTTCCGTTCCGTAGAACAGTACTCGCCCGG] consensusID : consensus_7699#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [CCTCGGGAACTGTTGGCCTACTGGATTAGCTTTCTAAACTCCATGACGGTTTTATGTGTTTGCAGAAAGTGAAGTAATAGAAAATGTTATTTTTTAAAGTATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCAAATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGATGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTTATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAAC] [-] EMBL CNS08F34 [CCTCGGGAACTGTTGGCCTACTGGATTAGCTTTCTAAACTCCATGACGGTTTTATGTGTTTGCAGAAAGTGAAGTAATAGAAAATGTTATTTTTTAAAGTATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCAAATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGATGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTTATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAAC] consensusID : consensus_7699#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [CCGCCCACGCGTCCGCGTTTGACAGCACGTGCGATAAAATCGCATGCGATGGAGCACAGACACGGGCCTAAATAACTAAATAATACCTGCAACAGTAGGGTTACCAATATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCTTATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAA] [+] EMBL BM649437 [CCGCCCACGCGTCCGCGTTTGACAGCACGTGCGATAAAATCGCATGCGATGGAGCACAGACACGGGCCTAAATAACTAAATAATACCTGCAACAGTAGGGTTACCAATATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCTTATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7699#0 CCGCCCACGCGTCCGTGCAACAGTAGGGTTACCAAGTAATAATCTTTATTAGCTTTCTAG 60 consensus_7699#2 -----------CCTCGGGAACTGTTGGCCTACTGG------------ATTAGCTTTCTAA 37 consensus_7699#3 --------CCGCCCACGCGTCCGC--GTTTGACAG----CACGTGCGATAAAATCGC--- 43 consensus_7699#1 ------------------------------------------------------------ consensus_7699#0 ACTCCATGACGGTTTTATGTGTTTGCAGAAAGTGAAGTAATAG--AAAATGTTATTTTTT 118 consensus_7699#2 ACTCCATGACGGTTTTATGTGTTTGCAGAAAGTGAAGTAATAG--AAAATGTTATTTTTT 95 consensus_7699#3 ATGCGATGGAGCACAGACACGGGCCTAAATAACTAAATAATACCTGCAACAGTAGGGTTA 103 consensus_7699#1 ---------------------------------------------------CCCACAGCC 9 consensus_7699#0 AAAGTATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCTTATGGCCCACA 178 consensus_7699#2 AAAGTATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCAAATGGCCCACA 155 consensus_7699#3 CCAATATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCTTATGGCCCACA 163 consensus_7699#1 AATTTAGTGCAGCAAAGTTTGG-ATGGACGAAGCTATGGTAAGCCAGCACAAATGACATG 68 ** ** * ** *** * * ** * * *** ** * * ** consensus_7699#0 GCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAG 238 consensus_7699#2 GCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAG 215 consensus_7699#3 GCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAG 223 consensus_7699#1 G---ATCCGTAGGAATTAACCTGTGATTTTTACAG-----ATGCTTTAGACTTTGTTCAG 120 * ** * * ** * *** ** ******************** consensus_7699#0 AGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTA 298 consensus_7699#2 AGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGATGATCTATGGATGGGTA 275 consensus_7699#3 AGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTA 283 consensus_7699#1 AGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTA 180 ******************************************* **************** consensus_7699#0 AAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATT 358 consensus_7699#2 AAGATAACCAGCATCATGTGGCCAAAAATTTATTTACGTACTGCCATGATCAAAGCTATT 335 consensus_7699#3 AAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATT 343 consensus_7699#1 AAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATT 240 ****************************** ***************************** consensus_7699#0 ATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTG 418 consensus_7699#2 ATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTG 395 consensus_7699#3 ATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTG 403 consensus_7699#1 ATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTG 300 ************************************************************ consensus_7699#0 ACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACA 478 consensus_7699#2 ACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACA 455 consensus_7699#3 ACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACA 463 consensus_7699#1 ACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACA 360 ************************************************************ consensus_7699#0 TATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCC 538 consensus_7699#2 TATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCC 515 consensus_7699#3 TATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCC 523 consensus_7699#1 TATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCC 420 ************************************************************ consensus_7699#0 GAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCT 598 consensus_7699#2 GAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCT 575 consensus_7699#3 GAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCT 583 consensus_7699#1 GAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCT 480 ************************************************************ consensus_7699#0 TCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAACAAAACTG 658 consensus_7699#2 TCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAAC------- 628 consensus_7699#3 TCTATCAAAAATAACTGTATTTCGAATCAAAA---------------------------- 615 consensus_7699#1 TCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAACAAAACGT 540 ******************************** consensus_7699#0 CAACGTAGCAAACAGAAAAAAAAAAAAAAAAAAGGGCCACATGCCCCCC----------- 707 consensus_7699#2 ------------------------------------------------------------ consensus_7699#3 ------------------------------------------------------------ consensus_7699#1 ATTCCGGGACAGTCCCAATTTCAAAATGGAAATTTAATGTCCAGTCGTAAAAAAAACCCG 600 consensus_7699#0 -------------------------------------------- consensus_7699#2 -------------------------------------------- consensus_7699#3 -------------------------------------------- consensus_7699#1 GGTCCGTGGCAACTCTTCCGTTCCGTAGAACAGTACTCGCCCGG 644 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||