These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7732#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 902 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAAAGGAGGGCGATGAAGAGGGTCACGTACAGTTCGAAGGGCTCGATACGGACCCAACCAGCACACCGTACGGTGCGTCCATTCCACTGGCCAAAGCGATGGACCCGCGGGGCGATGTGATACTGGCGTACGAGATGAACGGTCAACCGTTGAACCGCGATCATGGCTTCCCGGTGCGCGTGATTGTCCCGGGGGTGGTTGGATCGCGCAACGTGAAATGGTTGGGCCGGATTGTGGTGTCGCGGGCGGAAAGTTCCTCCCACTGGCAGCAGAATGATTACAAATCCTTCAGCCCCAGCACGGATTGGGATACGGTCGATTTTAAGAGTGCACCGGCGATACAGAACATGCCCGTCACGTCCGCTATCTGTACACCGGCCAGCGGAGAGACGGTGCAGGTGGAAAAGGACGGATACGTGACGGTGCGGGGGTACGCTTGGTCCGGCGGTGGGTCGGAGATTGTGCGCGTTGATCTGACGGCGGATGGTGGGAAAACGTGGACGGTGGCAAAGTTGGATGAGAGTGAGAAGGGTACTGGGCCAGGGCGGCACTGGTCGTGGTCA-CTGTGGACGGCGAAAATTCCGGTACCGAAGGG-GCAGCGCGGGGCATCGCTCGAGATCGTTTCGAAAGCGGTCGACAGTAACTACAACACGCAGCCGGAATCGTTCGCGAACATCTGGAATCTGCGGGGCGTCGTCGGCAATGCGTACAGCCGGGTGAAAGTGAATGTAAAGTAAACCCCGCCCGCGTGCTGCCAACCATAGTTGATAAGGGTGATGAGGGGCGATAAGAAAGGAACTATTTTGTTCAGTAGTCGTGTAGTGCGATTATTACTTGATTTCGTTCTGCCGT] [+] EMBL BM613168 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAAAGGAGGGCGATGAAGAGGGTCACGTACAGTTCGAAGGGCTCGATACGGACCCAACCAGCACACCGTACGGTGCGTCCATTCCACTGGCCAAAGCGATGGACCCGCGGGGCGATGTGATACTGGCGTACGAGATGAACGGTCAACCGTTGAACCGCGATCATGGCTTCCCGGTGCGCGTGATTGTCCCGGGGGTGGTTGGATCGCGCAACGTGAAATGGTTGGGCCGGATTGTGGTGTCGCGGGCGGAAAGTTCCTCCCACTGGCAGCAGAATGATTACAAATCCTTCAGCCCCAGCACGGATTGGGATACGGTCGATTTTAAGAGTGCACCGGCGATACAGAACATGCCCGTCACGTCCGCTATCTGTACACCGGCCAGCGGAGAGACGGTGCAGGTGGAAAAGGACGGATACGTGACGGTGCGGGGGTACGCTTGGTCCGGCGGTGGGTCGGAGATTGTGCGCGTTGATCTGACGGCGGATGGTGGGAAAACGTGGACGGTGGCAAAGTTGGATGAGAGTGAGAAGGGTACTGGGCCAGGGCGGCACTGGTCGTGGTCA CTGTGGACGGCGAAAATTCCGGTACCGAAGGGTGCAGCGCGGGGCATCGCTCGAGATC ] [+] EMBL BM609591 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAAAGGAGGGCGATGAAGAGGGTCACGTACAGTTCGAAGGGCTCGATACGGACCCAACCAGCACACCGTACGGTGCGTCCATTCCACTGGCCAAAGCGATGGACCCGCGGGGCGATGTGATACTGGCGTACGAGATGAACGGTCAACCGTTGAACCGCGATCATGGCTTCCCGGTGCGCGTGA ] [+] EMBL BX606430 [ GGACCCAACCAGCACACCGTACGGTGCGTCCATTCCACTGGCCAAAGCGATGGACCCGCGGGGCGATGTGATACTGGCGTACGAGATGAACGGTCAACCGTTGAACCGCGATCATGGCTTCCCGGTGCGCGTGATTGTCCCGGGGGTGGTTGGATCGCGCAACGTGAAATGGTTGGGCCGGATTGTGGTGTCGCGGGCGGAAAGTTCCTCCCACTGGCAGCAGAATGATTACAAATCCTTCAGCCCCAGCACGGATTGGGATACGGTCGATTTTAAGAGTGCACCGGCGATACAGAACATGCCCGTCACGTCCGCTATCTGTACACCGGCCAGCGGAGAGACGGTGCAGGTGGAAAAGGACGGATACGTGACGGTGCGGGGGTACGCTTGGTCCGGCGGTGGGTCGGAGATTGTGCGCGTTGATCTGACGGCGGATGGTGGGAAAACGTGGACCGTGGCAAAGTTGGATGAGAGTGAGAAGGGTACTGGGCCAGGGCGGCACTGGTCGTGGTCACCTGTGGA ] [+] EMBL BX623367 [ GACCCGCGGGGCGATGTGATACTGGCGTACGAGATGAACGGTCAACCGTTGAACCGCGATCATGGCTTCCCGGTGCGCGTGATTGTCCCGGGGGTGGTTGGATCGCGCAACATGAAATGGTTGGGCCGGATTGTGGTGTCGCGGGCGGAAAGTTCCTCCCACTGGCAGCAGAATGATTACAAATCCTTCAGCCCCAGCACGGATTGGGATACGGTCGATTTTAAGAGTGCACCGGCGATACAGAACATGCCCGTCACGTCCGCTATCTGTACACCGGCCAGCGGAGAGACGGTGCAGGTGGAAAAGGACGGATACGTGACGGTGCGGGGGTACGCTTGGTCCGGCGGTGGGTCGGAGATTGTGCGCGTTGATCTGACGGCGGATGGTGGGAAAACGTGGACGGTGGCAAAGTTGGATGAGAGTGAGAAGGGTACTGGGCCAGGGCGGCACTGGTCGTGGTCA CTGTGGACGGCGAAAATTCCGGTACCGAAGGG GCAGCGCGGGGCATCGCTCGAGATCGTTTCGAAAGCGGTCGACAGTAACTACAACACGCAGCCGGAATCGTTCGCGAACATCTGGAATCTGCGGGGCGTCGTCGGCAATGCGTACAGCCGGGTGAAAGTGAATGTAAAGTAAACCCCGCCCGCGTGCTGCCAACCATAGTTGATAAGGGTGATGAGGGGCGATAAGAAAGGAACTATTTTGTTCAGTAGTCGTGTAGTGCGATTATTACTTGATTTCGTTCTGCCGT] [+] EMBL BX613691 [ ACTGGCAGCAGAATGATTACAAATCCTTCAGCCCCAGCACGGATTGGGATACGGTCGATTTTAAGAGTGCACCGGCGATACAGAACATGCCCGTCACGTCCGCTATCTGTACACCGGCCAGCGGAGAGACGGTGCAGGTGGAAAAGGACGGATACGTGACGGTGCGGGGGTACGCTTGGTCCGGCGGTGGGTCGGAGATTGTGCGCGTTGATCTGACGGCGGATGGTGGGAAAACGTGGACGGTGGCAAAGTTGGATGAGAGTGAGAAGGGTACAGGGCCAGGGCGGCACTGGTCGTGGTCA CTGTGGACGGCGAAAATTCCGGTACCGAAGGG GCAGCGCGGGGCATCGCTCGAGATCGTTTCGAAAGCGGTC ] consensusID : consensus_7732#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 681 fasta sequence [CCGCAGCGATAAGGTGATGCTGGCGGCCGGCGGTGCCATCGACCCGTTCTGGCACATCTTCCAGCAGCACAACACGAAGGAGGTGCTAACGTTGCTGGAATCGTACCGCATCGGTAATCTGCGGGCGGATGATGTGGTCAGTACGAAGGACCTGCACGATCCCTGGTCTGCGGAACCGAAGCGCCATCCGATTCTGAAGCCTGCGACACAGAAACCGTTCAACGCGGAACCACCGGCGTCCGTGCTGGTGGACAGTTTCTTGACGCCGAATGAATTTTTCTACGTCCGCAACCATCTCCCGGTGCCAGAGGTGGACATTAAAAGCTACGAGCTGGAGATGGAGAACGAAAAGACGGGCCGGAGTAAAACGATTCGCTTTCCGGATCTTCTCAAGTACCCGAAGCACACCGTCACGGCAACGATTATGTGTGGGGGCAATCGACGAAGTGAAATGATGGAGGTCAAACCGATCAAGGGACTGCCGTGGGGTGCTTCGGCCGTCGGCAATGCGCAGTGGACCGGTGCACGACTTTGCGATGTCCTGCGGGACATGGGCGTAAAGGAGGGCGATGAAGAGGGTCACGTACAGTTCGAAGGGCTCGATACGGACCCAACCAGCACACCGTACGGTGCGTCCATTCCACTGGCCAAAGCGATGGACCCGCGGGGCGATGTGATACT] [+] EMBL BM651751 [CCGCAGCGATAAGGTGATGCTGGCGGCCGGCGGTGCCATCGACCCGTTCTGGCACATCTTCCAGCAGCACAACACGAAGGAGGTGCTAACGTTGCTGGAATCGTACCGCATCGGTAATCTGCGGGCGGATGATGTGGTCAGTACGAAGGACCTGCACGATCCCTGGTCTGCGGAACCGAAGCGCCATCCGATTCTGAAGCCTGCGACACAGAAACCGTTCAACGCGGAACCACCGGCGTCCGTGCTGGTGGACAGTTTCTTGACGCCGAATGAATTTTTCTACGTCCGCAACCATCTCCCGGTGCCAGAGGTGGACATTAAAAGCTACGAGCTGGAGATGGAGAACGAAAAGACGGGCCGGAGTAAAACGATTCGCTTTCCGGATCTTCTCAAGTACCCGAAGCACACCGTCACGGCAACGATTATGTGTGGGGGCAATCGACGAAGTGAAATGATGGAGGTCAAACCGATCAAGGGACT ] [+] EMBL BX622062 [ GTGCTAACGTTGCTGGAATCGTACCGCATCGGTAATTTGCGGGCGGATGATGTGGTCAGTACGAAGGACCTGCACGATCCCTGGTCTGCGGAACCGAAGCGCCATCCGATTCTGAAGCCTGCAACACAGAAACCGTTCAACGCGGAACCACCGGCGTCCGTGCTGGTGGACAGTTTCTTGACGCCGAATGAATTTTTCTATGTCCGCAACCATCTCCCGGTGCCGGAGGTGGACATTAAAAGCTACGAGCTGGAGATGGAGAACGAAAAGACGGGCCGGAGTAAAACGATTCGCTTTCCGGATCTTCTCAAGTACCCGAAGCACACCGTCACGGCAACGATTATGTGTGGGGGCAATCGACGAAGTGAAATGATGGAGGTCAAACCGATCAAGGGACTGCCGTGGGGTGCTTCGGCCGTCGGCAATGCGCAGTGGACCGGTGCACGACTTTGCGATGTCCTGCGGGACATGGGCGTAAAGGAGGGCGATGAAGAGGGTCACGTACAGTTCGAAGGGCTCGATACGGACCCAACCAGCACACCGTACGGTGCGTCCATTCCACTGGCCAAAGCGATGGACCCGCGGGGCGATGTGATACT] consensusID : consensus_7732#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence [CTCAGCAGATTCCNAGTTAAGCACACGGCCTTCGGCCGGCATCTGTGTAACGTACGGGGTCGGCGTGTACGACATAACCTCCTTCGTGCCGAAGCACCCGGGCAGCGATAAGGTGATGCTAGCGGCGGCGGGCTATCGACCCGTTCTGGCACATCTTCCAGCAGCACAACACGAAGGAGGTGCTAACGTTGCTGGAATCGTACCGCATCGGTAATTTGCGGGCGGATGATGTGGTCAGTACGAAGACTGCACGANACCCTGGTCTGGGAACCGAAGCGCCATCCGATTCTGAAGCCTGCAACACAGAAACCGTTCAACGCGGAACCACCGGCGTCCGTGCTGGTGGACAGTTTCTTGACGCCGAATGAATTTTTTCTATGTCCGAAACATCTCCCCGGTGCCGGAGGTGGACATTAACAGCTACGAGCTGGAGATGGAGAAACGAAAAGAGGGCCGGACGTAAAAACGATTCGCTTTCCGGATCTTTCTCAAGGTACCCCGAAGGCACACCGTCAACGGCAAACGATTATGTGTTGGGGGGCAATTCGAACGAAGTTGACACTGATGGGAGGGTCAACACCCGACTCAAGGGGACTGNCGATGGGGTGTNCAGGCGTCGGACATGNCAGTGGACCAGGTGCACGA] [+] EMBL AL695237 [CTCAGCAGATTCCNAGTTAAGCACACGGCCTTCGGCCGGCATCTGTGTAACGTACGGGGTCGGCGTGTACGACATAACCTCCTTCGTGCCGAAGCACCCGGGCAGCGATAAGGTGATGCTAGCGGCGGCGGGCTATCGACCCGTTCTGGCACATCTTCCAGCAGCACAACACGAAGGAGGTGCTAACGTTGCTGGAATCGTACCGCATCGGTAATTTGCGGGCGGATGATGTGGTCAGTACGAAGACTGCACGANACCCTGGTCTGGGAACCGAAGCGCCATCCGATTCTGAAGCCTGCAACACAGAAACCGTTCAACGCGGAACCACCGGCGTCCGTGCTGGTGGACAGTTTCTTGACGCCGAATGAATTTTTTCTATGTCCGAAACATCTCCCCGGTGCCGGAGGTGGACATTAACAGCTACGAGCTGGAGATGGAGAAACGAAAAGAGGGCCGGACGTAAAAACGATTCGCTTTCCGGATCTTTCTCAAGGTACCCCGAAGGCACACCGTCAACGGCAAACGATTATGTGTTGGGGGGCAATTCGAACGAAGTTGACACTGATGGGAGGGTCAACACCCGACTCAAGGGGACTGNCGATGGGGTGTNCAGGCGTCGGACATGNCAGTGGACCAGGTGCACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7732#1 ------------------------------------------------------------ consensus_7732#2 ----------CTCAGCAGATTCCNAGTTAAGCACACGGCCTTCGGCCGGCATCTGTGTAA 50 consensus_7732#0 CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAAAGGAGGG 60 consensus_7732#1 -------------------------------------------------CCGCAGCGATA 11 consensus_7732#2 CGTACGGGGTCGGCGTGTACGACATAACCTCCTTCGTGCCGAAGCACCCGGGCAGCGATA 110 consensus_7732#0 CGATGAAGAGGGTCACGTACAGTTCGAAGGGCTCGATACGGACCCAACCAGCACACCGTA 120 * ** consensus_7732#1 AGGTG-ATGCTGGCGGCCGGC-GGTGCCATCGACCCGTTCTGGCACATCTTCCAGCAGCA 69 consensus_7732#2 AGGTG-ATGCTAGCGGC-GGC-GG-GCTATCGACCCGTTCTGGCACATCTTCCAGCAGCA 166 consensus_7732#0 CGGTGCGTCCATTCCACTGGCCAAAGCGATGGACCCGCGGGGCGATGTGATACTGGCGTA 180 **** * * * * *** ** ** ****** * * * * * * * * consensus_7732#1 CAACACGAAGG---AGGTGCTAA----CGTTGCTGGAATCGTAC--CGCATCGGTAATCT 120 consensus_7732#2 CAACACGAAGG---AGGTGCTAA----CGTTGCTGGAATCGTAC--CGCATCGGTAATTT 217 consensus_7732#0 CGAGATGAACGGTCAACCGTTGAACCGCGATCATGGCTTCCCGGTGCGCGTGATTGTCCC 240 * * * *** * * * * * ** * *** ** *** * * consensus_7732#1 GCGGGCGGATGATGTGGTCAGTACGAAGGACCTGCACGAT-CCCTGGTCTGCGGAACCGA 179 consensus_7732#2 GCGGGCGGATGATGTGGTCAGTACGAAGA--CTGCACGANACCCTGGTCTG-GGAACCGA 274 consensus_7732#0 GGGGGTGGTTGGATCGCGCAACGTGAAATGGTTGGGCCGGATTGTGGTGTCGCGGGCGGA 300 * *** ** ** * ** *** ** * **** * * * ** consensus_7732#1 AGCGCCATCCGATTCTGAAGCCTGCGACACAGAAACCGTTCAACGCGGAACC--ACCGGC 237 consensus_7732#2 AGCGCCATCCGATTCTGAAGCCTGCAACACAGAAACCGTTCAACGCGGAACC--ACCGGC 332 consensus_7732#0 AAGTTCCTCCCACTG-GCAGCAGAATGATTACAAATCCTTCAGCCCCAGCACGGATTGGG 359 * * *** * * * *** * *** * **** * * * * ** consensus_7732#1 GTCCGTGCTGGTG-GACAGTTTCTTGACGCCGAATGA-ATTTTT-CTACGTCCGCAA-CC 293 consensus_7732#2 GTCCGTGCTGGTG-GACAGTTTCTTGACGCCGAATGA-ATTTTTTCTATGTCCGAAA-CA 389 consensus_7732#0 ATACGGTCGATTTTAAGAGTGCACCGGCGATACAGAACATGCCCGTCACGTCCGCTATCT 419 * ** * * * *** * ** * * ** * ***** * * consensus_7732#1 ATCTCCCGGT-GCCAGAG-----GTGGACATTAAAAGCTACGAGCTGGAGATGGAGAA-C 346 consensus_7732#2 TCTCCCCGGT-GCCGGAG-----GTGGACATTAACAGCTACGAGCTGGAGATGGAGAAAC 443 consensus_7732#0 GTACACCGGCCAGCGGAGAGACGGTGCAGGTGGAAAAGGACGGATACGTGACGGTGCGGG 479 **** * *** *** * * * * *** * ** ** * consensus_7732#1 GAAAAGAC-GGGCCGGAGTAAAA-CG---ATTCGCTTTCCGGATCTT-CTCAAG-TACCC 399 consensus_7732#2 GAAAAGAG-GGCCGGACGTAAAAACG---ATTCGCTTTCCGGATCTTTCTCAAGGTACCC 499 consensus_7732#0 GGTACGCTTGGTCCGGCGGTGGGTCGGAGATTGTGCGCGTTGATCTGACGGCGGATGGTG 539 * * * ** * * * ** *** ***** * * * consensus_7732#1 --GAAGCACACCGTCA-CGGCAA---CGATTATGTGT--GGGGGCAATC--GACGAAGTG 449 consensus_7732#2 CGAAGGCACACCGTCAACGGCAAA--CGATTATGTGTTGGGGGGCAATTCGAACGAAGTT 557 consensus_7732#0 --GGAAAACGTGGACGGTGGCAAAGTTGGATGAGAGTGAGAAGGGTACTGGGCCAGGGCG 597 ** * * ***** * * * ** * ** * * * consensus_7732#1 AA--ATGATGGA--GGTCAA--ACCGATC--AAGGGACTGCCG-TGGGGTGCTTCGGC-C 499 consensus_7732#2 GACACTGATGGGAGGGTCAACACCCGACTCAAGGGGACTGNCGATGGGGTG-TNCAGG-C 615 consensus_7732#0 GCACTGGTCGTGGTCACTGTGGACGGCGAAAATTCCGGTACCGAAGGGGCAGCGCGGGGC 657 * * * * * * ** **** * * * consensus_7732#1 GTCGGCAATGCGCAGT--GGACC-GGTGCACGACT-TTGCGATGTCCTGCGGGA--CATG 553 consensus_7732#2 GTCGGACATGN-CAGT--GGACCAGGTGCACGA--------------------------- 645 consensus_7732#0 ATCGCTCGAGATCGTTTCGAAAGCGGTCGACAGTAACTACAACACGCAGCCGGAATCGTT 717 *** * * * * * *** ** consensus_7732#1 GGCGTAAAGGAGGGCGATGAAGAGGGTCACGTACAGTTCGAAGGGCTCGATACGGACCCA 613 consensus_7732#2 ------------------------------------------------------------ consensus_7732#0 CGCGAACATCTGGAATCTGCGGGGCGTCGTCGGCAATGCGTACAGCCGGGTGAAAGTGAA 777 consensus_7732#1 ACCAGCACACCGTACGGT-GCGTCCATTCCACTGGCCAAAGCGATGGACCCGCGGGGCGA 672 consensus_7732#2 ------------------------------------------------------------ consensus_7732#0 TGTAAAGTAAACCCCGCCCGCGTGCTGCCAACCATAGTTGATAAGGGTGATGAGGGGCGA 837 consensus_7732#1 TGTGATACT--------------------------------------------------- 681 consensus_7732#2 ------------------------------------------------------------ consensus_7732#0 TAAGAAAGGAACTATTTTGTTCAGTAGTCGTGTAGTGCGATTATTACTTGATTTCGTTCT 897 consensus_7732#1 ----- consensus_7732#2 ----- consensus_7732#0 GCCGT 902 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||