These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_781#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [AAAGTGGACGGCAGAATCATTTCAGGAAGTGTTCTAAATTGCTTGCACTAAGCTTACCGCGTGTCACTTTTGCTTATTTGGTGTCATTTTAGTCGAAACGCGCAAACTCATACGAGATGTAAAGGGAGACAAATCAATACTGGTGGTGTTGTGTTCGACGAGGATCAATCCACTCACAATGCTAGATGATGAAGTGCGGAGAAAGATTTCACACTAGAGATACTTCCACAAAATATTACCGATATTCGACACCACACCGAGAACTACCACTGATGTCAGGGAATTCTACTACATTCAGATGGAGAAGTACGCCAGACAGGCAGTAAGCGAGGGCATGAAGAACGCAGACGACATCCACGTAAGCAATGACAGCGAGATTTACCGCGTGCTCAACCTACACTACAATCGGAACAATCACATAGAGGTGCCCCAAAATTTCCGATACGTCGTTGAGCAGACGTTGCGTGAATTCTTCCGCGCGATTCAAGGCGGCAAGGACACCGAGCAGTCGTGGAAAAAATCAATTTACAAAATCATCTCCCGAATGGATGATCCTGTGCCGGAGTATTTCAAATCTCCGAACTTCCTCGAGCAGCTGGAGTAAGTTAAGCGGGCGGGGTCCCGTTACTAATAC] [+] EMBL BM607627 [AAAGTGGACGGCAGAATCATTTCAGGAAGTGTTCTAAATTGCTTGCACTAAGCTTACCGCGTGTCACTTTTGCTTATTTGGTGTCATTTTAGTCGAAACGCGCAAACTCATACGAGATGTAAAGGGAGACAAATCAATACTGGTGGTGTTGTGTTCGACGAGGATCAATCCACTCACAATGCTAGATGATGAAGTGCGGAGAAAGATTTCACACTAGAGATACTTCCACAAAATATTACCGATATTCGACACCACACCGAGAACTACCACTGATGTCAGGGAATTCTACTACATTCAGATGGAGAAGTACGCCAGACAGGCAGTAAGCGAGGGCATGAAGAACGCAGACGACATCCACGTAAGCAATGACAGCGAGATTTACCGCGTGCTCAACCTACACTACAATCGGAACAATCACATAGAGGTGCCCCAAAATTTCCGATACGTCGTTGAGCAGACGTTGCGTGAATTCTTCCGCGCGATTCAAGGCGGCAAGGACACCGAGCAGTCGTGGAAAAAATCAATTTACAAAATCATCTCCCGAATGGATGATCCTGTGCCGGAGTATTTCAAATCTCCGAACTTCCTCGAGCAGCTGGAGTAAGTTAAGCGGGCGGGGTCCCGTTACTAATAC] consensusID : consensus_781#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [CCGGATCTTGAAAGTGGACGGCAGAATCATTTCAGGAAGCGTTCTAAATAGCTACAACTAAGCTTACCGCGTGTCACTTTTGCTTATTTGGTGTCATTTTAGTCGAAACGCGCAAACTCCTACGAGATGTAAAGGAAGACAAATCAATACTGGTGGTGTTGTGTTCGACGAGGATCAATCCACTCACAATGCTAGATGATGAAGTGCGGAGAAAGATTTCACACTAGAGATACTTCCACAAAATATTACCGATATTCGACACCACACCGAGAACTACCACTGATGTCAGGTCCATGCCATGGAAGGGGAAAGCTAAGGCCGGGTTAAGCGACCGTTCGGATATTGGAGGGGGCTGCTCGTGCAGCAGCAGCAGTACGAAAAAGACGACGCTAAGGAATCGCCGTGCGCAAAACAAAGACCACGCGCTTGCAGCGACCCGAACCGTTGGTAGTGTGCGTGACGACGCCGGCAACCGGGGAGGGGAACGGTTCCCCCACCCGCTTGACAGCGGTCTATTTTGCAGGGGAAGTTATCTTCGCCGCCTTTGTCGTCGTCTTTGTCGTTGCCACCACCACCACCGCTGCAGCAACCGCCGCCACCACCGCCGTCGTCGTGTTCGTGAA] [+] EMBL BM579920 [CCGGATCTTGAAAGTGGACGGCAGAATCATTTCAGGAAGCGTTCTAAATAGCTACAACTAAGCTTACCGCGTGTCACTTTTGCTTATTTGGTGTCATTTTAGTCGAAACGCGCAAACTCCTACGAGATGTAAAGGAAGACAAATCAATACTGGTGGTGTTGTGTTCGACGAGGATCAATCCACTCACAATGCTAGATGATGAAGTGCGGAGAAAGATTTCACACTAGAGATACTTCCACAAAATATTACCGATATTCGACACCACACCGAGAACTACCACTGATGTCAGGTCCATGCCATGGAAGGGGAAAGCTAAGGCCGGGTTAAGCGACCGTTCGGATATTGGAGGGGGCTGCTCGTGCAGCAGCAGCAGTACGAAAAAGACGACGCTAAGGAATCGCCGTGCGCAAAACAAAGACCACGCGCTTGCAGCGACCCGAACCGTTGGTAGTGTGCGTGACGACGCCGGCAACCGGGGAGGGGAACGGTTCCCCCACCCGCTTGACAGCGGTCTATTTTGCAGGGGAAGTTATCTTCGCCGCCTTTGTCGTCGTCTTTGTCGTTGCCACCACCACCACCGCTGCAGCAACCGCCGCCACCACCGCCGTCGTCGTGTTCGTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_781#0 ----------AAAGTGGACGGCAGAATCATTTCAGGAAGTGTTCTAAATTGCTTGCACTA 50 consensus_781#1 CCGGATCTTGAAAGTGGACGGCAGAATCATTTCAGGAAGCGTTCTAAATAGCTACAACTA 60 ***************************** ********* *** **** consensus_781#0 AGCTTACCGCGTGTCACTTTTGCTTATTTGGTGTCATTTTAGTCGAAACGCGCAAACTCA 110 consensus_781#1 AGCTTACCGCGTGTCACTTTTGCTTATTTGGTGTCATTTTAGTCGAAACGCGCAAACTCC 120 *********************************************************** consensus_781#0 TACGAGATGTAAAGGGAGACAAATCAATACTGGTGGTGTTGTGTTCGACGAGGATCAATC 170 consensus_781#1 TACGAGATGTAAAGGAAGACAAATCAATACTGGTGGTGTTGTGTTCGACGAGGATCAATC 180 *************** ******************************************** consensus_781#0 CACTCACAATGCTAGATGATGAAGTGCGGAGAAAGATTTCACACTAGAGATACTTCCACA 230 consensus_781#1 CACTCACAATGCTAGATGATGAAGTGCGGAGAAAGATTTCACACTAGAGATACTTCCACA 240 ************************************************************ consensus_781#0 AAATATTACCGATATTCGACACCACACCGAGAACTACCACTGATGTCAGGGAATTCTACT 290 consensus_781#1 AAATATTACCGATATTCGACACCACACCGAGAACTACCACTGATGTCAGG----TCCATG 296 ************************************************** ** * consensus_781#0 ACATTCAGATGGAGAAGTACGCCAGACAGGCAGTAAGCGAGGGCATGAAGAACGCAGACG 350 consensus_781#1 CCATGGAAGGGGAAAGCTA----AGGCCGG-GTTAAGCGACCGTTCGGATATTGGAGGGG 351 *** * *** * ** ** * ** ******* * * * * * ** * consensus_781#0 ACATCCACGTA-AGCAATGACAGCGAGATTTACCGCGTGCTCAACCTACACTACAATCGG 409 consensus_781#1 GC-TGCTCGTGCAGCAGCAGCAGTACGAAAAAGACGACGCTAAGGAATCGCCGTGCGCAA 410 * * * *** **** *** ** * *** * * * * consensus_781#0 AACAATCACATAGAGGTGCCCCAAAATTTCCGATACGTCGTTGAGCAGACGTTGCGTGAA 469 consensus_781#1 AACAAAGACC---ACGCGCTTGCAGCGACCCGAACCGTTGGT-AGTG-----TGCGTGAC 461 ***** ** * * ** * **** *** * * ** ******* consensus_781#0 TTCTTCCGCGCGATTCAAGGCGGCAAGGACACCGAGCAGTCGTGGAAAAAATCAATTTAC 529 consensus_781#1 GACGCCGGCAACCGGGGAGGGGAACGGTTCCCCCACCCGCTTGACAGCGGTCTATTTTGC 521 * * ** *** * * * ** * * * * * *** * consensus_781#0 AAAATCATCTCCCGAATGGATGATCCTGTGCCGGAGTATTTCAAATCTCCGAACTTCCTC 589 consensus_781#1 AGGGGAAGTTATC--TTCGCCGCCTTTGTCGTCGTCTTTGTCGTTGCCACCACCACCACC 579 * * * * * * * *** * * * ** * * * * * * consensus_781#0 GA-GCAGCTGGAGTAAGTTAAGCGGGCGGGGTCCCGTTACTAATAC 634 consensus_781#1 GCTGCAGCAACCGCCGCCACCACCGCCGTCGTCGTGTTCGTGAA-- 623 * ***** * * * ** *** *** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||