|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7815#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1652 fasta sequence
[TCGCCCGAGGTNAACAAGAATCTAGGCGAGGCGCATCAAACATCGCCGCCCTTTCGTCGTACACTCTTCGGCAGCATAATTCCGCACTTGGTTTGTTCAAATTTCTCGCAACGAAACATATCGCTATTGGTTTTGTGCTGTGTTTGTGAGTGCTCGAAAGGAACCG-AAAACACGATGACCGAAGCGCAGATCTGTGATATTAGCCCCGAGGCAAAGGAGGAGATCAGCAAGTTTCGCTTCCGACGCAACGCAACCAATACGGCATTGATTCTGAAAATCGACCGCGAGAAGCAGCTGGTTACCGTGGACGAGCTGCTGGATGACGTAGCGATCGAGGAGCTGCAGGAACAGCTGCCCAGCCACCAGCCGCGCTACATCATCTACAGCTACAAGATGGTACATGACGATTCACGGATATCTTACCCGATGTGCTTCATCTTCTACACGCCGCGCGACAGCCAGATGGAGCTGTGCATGCTGTACGCGAAAACGCGCATGGCGCTGCAGCGCGAGGCCGACCTGACGCGCTACTACGAAATCCGCGAGCTGGACGATATGACCGAGGACTGGCTGAGGGAGAAGCTGCGATAAGCGCGTTTACCGGAAGCACTTTACAAAAGACACAAACACACCTACACACACACACACATATACACGCATTGCAACGACAGTACAGTTGGCCCCAGTTGAGCGAATTAGAAATGAATTTGCC-AAAAAACAAGAAAGACAAACTAAATGCCAGAAGAAAGTGAAAGCAATAATCGAGGGCCGTAACTCATG-CCACTACCAACCTGTATTTCAACCTTCGCTGTGTGATAATCAGCTTTATCGGTGAAGCATATCCCAGCATTATTACATTAGTAGAACAGGGAGTTACGCATTTAGAGAGCTTATTGGACGAGGTTATTGGTTGAAATTACCTCGGTGGACGCATACATACGATAAATAGTTGTATTACGTACCTTCCCCACAACAATAACGATGCAGGATGAGCAGCAGCAGGAGCCGAAGCAAACCAAAAGGACCACTAAAGGGCTTTTGCTGCTAAACTACAAGCAACCAACATTGCAGGAACTAAAAAGGGTTAGATTTTGATCGTGCAACGACGATATTTTTGTGTGCGTGTGATAGAGAAGCTACTACATACCTATATAGCTGTATAGAAGTTCTTCCTTTATTGTATTCTATTAGCCGATGTTACTGTATTTCCACAGTAGCAGAGTGTATTTTCTTTCCATTTTCTTACGCCACGTGGCGTCTGTCTAGACGACATAAGACAAAAGTACAAGTACGCTACTGATAGTGTACGGTTTTGTGCGTGTTTTTTGAGGGGGAGTAAACTTACTTAGTTTGATTTTGGTTTTTTTTCTTCTGTTTTTGAGTTGTTGTATGGCTGTAAAAGGAATTGTAACGATTTCGACTGAAAAGGGCGTAGGAAGAAAGAGGAAAGGAAACGGTAGTGATCGTAGGAAAGATCGATAGAGATAGTTCTTTTTTTTGCACTAGCATATCGCTTGTCTTACAGGGTTGAAAATAGCTTCTTCTTTTGTTGTATTCACAACAGGAATAAGGCAAGGGAGTAAATCCTTAAAAAAAACCAGGCTTTGGATTTCATATTTTGACCGTAGTGTTTAGTTCACGTGTGTTCATTG]
[+] EMBL AL932249 [TCGCCCGAGGTNAACAAGAATCTAGGCGAGGCGCATCAAACATCGCCGCCCTTTCGTCGTACACTCTTCGGCAGCATAATTCCGCACTTGGTTTGTTCAAATTTCTCGCAACGAAACATATCGCTATTGGTTTTGTGCTGTGTTTGTGAGTGCTCGAAAGGAACCG AAAACACGATGACCGAAGCGCAGATCTGTGATATTAGCCCCGAGGCAAAGGAGGAGATCAGCAAGTTTCGCTTCCGACGCAACGCAACCAATACGGCATTGATTCTGAAAATCGACCGCGAGAAGCAGCTGGTTACCGTGGACGAGCTGCTGGATGACGTAGCGATCGAGGAGCTGCAGGAACAGCTGCCCAGCCACCAGCCGCGCTACATCATCTACAGCTACAAGATGGTACATGACGATTCACGGATA ]
[+] EMBL BM594181 [ ccgCACTCTTCGGCAGCATAATTCCGCACTTGGTTTGTTCAAATTTCTCGCAACGAAACATATCGCTATTGGTTTTGTGCTGTGTTTGTGAGTGCTCGAAAGGAAACGAAAAACACGATGACTGAAGCGCAGATCTGTGATATTAGCGCCGAGGCAAAGGAGGAGATCAGCAAGTTTCGCTTCCGACGCAACGCAACCAATACGGCATTGATTCTGAAAATCGACCGCGAGAAGCAGCTGGTTACCGTGGACGAGCTGCTGGATGACGTAGCGATCGAGGAGCTGCAGGAACAGCTGCCCAGCCACCAGCCGCGCTACATCATCTACAGCTACAAGATGGTGCACGACGATTCGCGAATATCTTACCCGATGTGCTTCATCTTCTACACGCCGCGCGACAGCCAGATGGAGCTGTGCATGCTGTACGCGAAAACGCGCATGGCGCTGCAGCGCGAGGCCGACCTGACGCGCTACTACGAAATCCGCGAGCTGGACGATATGACCGAGGACTGGCTGAGGGAGAAGCTGCGATAAGCGCGTTTACCGGAAGCACTTTACAAAAGACACAAACACACCTACACACACACACACATATACACGCATTGCAACGACAGTACAGTTGGCC ]
[+] EMBL BX622552 [ nACGAAACATATCGCTATTGGTTTTGTGCTGTGTTTGTGAGTGCTCGAAAGGAACCG AAAACACGATGACCGAAGCGCAGATCTGTGATATTAGCCCCGAGGCAAAGGAGGAGATCAGCAAGTTTCGCTTCCGACGCAACGCAACCAATACGGCATTGATTCTGAAAATCGACCGCGAGAAGCAGCTGGTTACCGTGGACGAGCTGCTGGATGACGTAGCGATCGAGGAGCTGCAGGAACAGCTGCCCAGCCACCAGCCGCGCTACATCATCTACAGCTACAAGATGGTACATGACGATTCACGGATATCTTACCCGATGTGCTTCATCTTCTACACGCCGCGCGACAGCCAGATGGAGCTGTGCATGCTGTACGCGAAAACGCGCATGGCACTGCAGCGCGAGGCCGACCTGACGCGCTACTACGAAATCCGCGAGCTGGACGATATGACCGAGGACTGGCT ]
[+] EMBL BX627007 [ tntTCTTCTACACGCCGCGCGACAGCCAGATGGAGCTGTGCATGCTGTACGCGAAAACGCGCATGGCGCTGCAGCGCGAGGCTGACCTGACGCGCTACTACGAAATCCGCGAGCTGGACGATATGACCGAGGACTGGCTGAAGGAGAAGCTGCGATAAGCGCGTTTACCGTGAGCACTTTACAAAAGACACAAACACACCTACACACACACACACATATACACGCATTGCAACGACAGTACAGTTGGCCCCAGTTGAGCGAATTAGAAATGAATTTGCCAAAAAAACAAGAAAGACAAACTAAATGCCAGAAGAAAGTGAAAGCAATAATCGAGGGCCGTAACTCATG CCACTACCAACCTGTATTTCAACCTTCGCTGTGTGATAATCAGCTTTATCGGTGAAGCATATCCCAGCATTATTACATTAGTAGAACAGGGAGTTACGCATTTAGAGAGCTTATTGGACGAGGTTATTGGTTGAAATTACCTCGGTGGACGCATACATACGATAAATAGTTGTATTACGTACCTT ]
[+] EMBL BM599382 [ ccgCACACACACACACATATACACGCATTGCAACGACAGTACAGTTGGCCCCAGTTGAGCGAATGAGAAATGACTTTGCC AAAAAACAAGAAAGACAAACTAAATGCCAGAAGAAAGTGAAAGCAATAATCGAGGGCCGTAACTCATGCCCACTACCAACCTGTATTTCAAACTCCGCTGTATGATAATCAGCTTTATCGGTGAAGCATATCCCAGCATTATTACATTAGTAGAACAGGGAGTTACGCATTTAGAGAGCTTATTGGACGAGGTTATTGGTTGAAATTACCTCGGTGAACGCATACATACGATAAATAGTTGTATTACGTACCTTCCCCACAACAATAACGATGCAGGATGAGCAGCAGCAGGAGCCGAAGCAAACCAAAAGGACCACTAAAGGGCTTTTGCTGCTAAACTACAAGCAACCAACATTGCAGGAACTAAAAAGGGTTAGATTTTGATCGTGCAACGACGATATTTTTGTGTGCGTGTGATAGAGAAGCTACTACATACCTATATAGCTGTATAGAAGTTCTTCCTTTATTGTATTCTATTAGCCGATGTTACTGTATTTCCACAGTAGCAGAGTGTATTTTCTTTCCATTTTCTTACGCCACGTGGCGTCTGTCTAGAC ]
[+] EMBL BM582610 [ ccgGTGATAGAGAAGCTACTACATACCTATATAGCTGTATAGAAGTTCTTCCTTTATTGTATTCTATTAGCCGATGTTACTGTATTTCCACAGTAGCAGAGTGTATTTTCTTTCCATTTTCTTACGCCACGTGGCGTCTGTCTAGACGACATAAGACAAAAGTACAAGTACGCTACTGATAGTGTACGGTTTTGTGCGTGTTTTTTGAGGGGGAGTAAACTTACTTAGTTTGATTTTGGTTTTTTTTCTTCTGTTTTTGAGTTGTTGTATGGCTGTAAAAGGAATTGTAACGATTTCGACTGAAAAGGGCGTAGGAAGAAAGAGGAAAGGAAACGGTAGTGATCGTAGGAAAGATCGATAGAGATAGTTCTTTTTTTTGCACTAGCATATCGCTTGTCTTACAGGGTTGAAAATAGCTTCTTCTTTTGTTGTATTCACAACAGGAATAAGGCAAGGGAGTAAATCCTTAAAAAAAACCAGGCTTTGGATTTCATATTTTGACCGTAGTGTTTAGTTCACGTGTGTTCATTG]
consensusID : consensus_7815#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 324 fasta sequence
[TACGACGAAAGGGCGGCGATGTTTGAATGCGCCTCGCCTAGATTCTTTGTTTGTGTTTTGTTCGGTGCCGTTTTGTATTGGTTGTCTTCTTGTTCTTGGACCCGTTGGACAAGGCGAGAGTTTTTGACGTTTGAAAATAGCTGCATCTTGCTCATTTTCTCTAGCCGTCCTTTACTCGCTTACAGTGCTCGTCTCAAGGTGAGTTTCTCTGCCCCCTGCTCACACTTTGCTCCAAACACTTCTTCCACTTTGTCGTACCGTCTCTTTCGCGCACATGGACGCGTGACAAATGTAAACAACTTGGTGGCTGATGCGAAATAGAAG]
[+] EMBL CNS09HE9 [TACGACGAAAGGGCGGCGATGTTTGAATGCGCCTCGCCTAGATTCTTTGTTTGTGTTTTGTTCGGTGCCGTTTTGTATTGGTTGTCTTCTTGTTCTTGGACCCGTTGGACAAGGCGAGAGTTTTTGACGTTTGAAAATAGCTGCATCTTGCTCATTTTCTCTAGCCGTCCTTTACTCGCTTACAGTGCTCGTCTCAAGGTGAGTTTCTCTGCCCCCTGCTCACACTTTGCTCCAAACACTTCTTCCACTTTGTCGTACCGTCTCTTTCGCGCACATGGACGCGTGACAAATGTAAACAACTTGGTGGCTGATGCGAAATAGAAG]
[+] EMBL CNS0938P [ GCTGCATCTTGCTCATTTTCTCTAGCCGTCCTTTACTCGCTTACAGTGCTCGTCTCAAGGTGAGTTTCTCTGCCCCCTGCTCACACTTTGCTCCAAACACTTCTTCCACTTTGTCGTACCGTCTCTTTCGCGCACATGGACGCGTGACAAATGTAAACAACTTGGTGGCTGATGCGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7815#0 TCGCCCGAGGTNAACAAGAATCTAGGCGAGGCGCATCAAACATCGCCGCCCTTTCGTCGT 60
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 ACACTCTTCGGCAGCATAATTCCGCACTTGGTTTGTTCAAATTTCTCGCAACGAAACATA 120
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 TCGCTATTGGTTTTGTGCTGTGTTTGTGAGTGCTCGAAAGGAACCGAAAACACGATGACC 180
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 GAAGCGCAGATCTGTGATATTAGCCCCGAGGCAAAGGAGGAGATCAGCAAGTTTCGCTTC 240
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 CGACGCAACGCAACCAATACGGCATTGATTCTGAAAATCGACCGCGAGAAGCAGCTGGTT 300
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 ACCGTGGACGAGCTGCTGGATGACGTAGCGATCGAGGAGCTGCAGGAACAGCTGCCCAGC 360
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 CACCAGCCGCGCTACATCATCTACAGCTACAAGATGGTACATGACGATTCACGGATATCT 420
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 TACCCGATGTGCTTCATCTTCTACACGCCGCGCGACAGCCAGATGGAGCTGTGCATGCTG 480
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 TACGCGAAAACGCGCATGGCGCTGCAGCGCGAGGCCGACCTGACGCGCTACTACGAAATC 540
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 CGCGAGCTGGACGATATGACCGAGGACTGGCTGAGGGAGAAGCTGCGATAAGCGCGTTTA 600
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 CCGGAAGCACTTTACAAAAGACACAAACACACCTACACACACACACACATATACACGCAT 660
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 TGCAACGACAGTACAGTTGGCCCCAGTTGAGCGAATTAGAAATGAATTTGCCAAAAAACA 720
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 AGAAAGACAAACTAAATGCCAGAAGAAAGTGAAAGCAATAATCGAGGGCCGTAACTCATG 780
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 CCACTACCAACCTGTATTTCAACCTTCGCTGTGTGATAATCAGCTTTATCGGTGAAGCAT 840
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 ATCCCAGCATTATTACATTAGTAGAACAGGGAGTTACGCATTTAGAGAGCTTATTGGACG 900
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 AGGTTATTGGTTGAAATTACCTCGGTGGACGCATACATACGATAAATAGTTGTATTACGT 960
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 ACCTTCCCCACAACAATAACGATGCAGGATGAGCAGCAGCAGGAGCCGAAGCAAACCAAA 1020
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 AGGACCACTAAAGGGCTTTTGCTGCTAAACTACAAGCAACCAACATTGCAGGAACTAAAA 1080
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 AGGGTTAGATTTTGATCGTGCAACGACGATATTTTTGTGTGCGTGTGATAGAGAAGCTAC 1140
consensus_7815#1 ----------TACGACGAAAGGGCGGCGATGTTTGAATGCGCCTCGCCTAGA-----TTC 45
* ** ** **** *** ** ** * **** * *
consensus_7815#0 TACATACCTATATAGCTGTATAGAAGTTCTTCCTTTATTGTATTCTATTAGCCGATGTTA 1200
consensus_7815#1 TTTGTTTGTGTTTTGTTCGGT-GCCGTTTTGTATTGGTTGTCTTCTTGTTCTTGGACCCG 104
* * * * * * * * * *** * ** **** **** * *
consensus_7815#0 CTGTATTTCCACAGTAGCAGAGTGTATTTTCTTTCCATTTTCTTACGCCACGTGGCGTCT 1260
consensus_7815#1 TTGGA------CAAGGCGAGAGTTTTTGACGTTTGAAAATAGCTGCATCTTGCTCATTTT 158
** * ** ***** * * *** * * * * * * * *
consensus_7815#0 GTCTAGACGACATAAGACAAAAGTACAAGTACGCTACTGATAGTGTACGGTTTTGTGCGT 1320
consensus_7815#1 CTCTAGCCGTCCTT---------------TAC-TCGCTTACAGTGCTCGTCTCAAGGTGA 202
***** ** * * *** ** * **** ** * * *
consensus_7815#0 GTTTTTTGAGGGGGAGTAAACTTACTTAGTTTGATTTTGGTTTTTTTTCTTCTGTTTTTG 1380
consensus_7815#1 GTTTCTCT----GCCCCCTGCTCAC--ACTTTGCTCCAAACACTTCTTCCACT-TTGTCG 255
**** * * ** ** * **** * ** *** ** ** * *
consensus_7815#0 AGTTGTTGTATGGCTGTAAAAGGAATTGTAACGATTTCGACTGAAAAGGGCGTAGGAAGA 1440
consensus_7815#1 TACCGTCTCTTTCGCGCACATGGACGCGTGACAAATGTAAACAACTTGGTGGCTGATGCG 315
** * * * * *** ** ** * * * * ** * *
consensus_7815#0 AAGAGGAAAGGAAACGGTAGTGATCGTAGGAAAGATCGATAGAGATAGTTCTTTTTTTTG 1500
consensus_7815#1 AAATAGAAG--------------------------------------------------- 324
** ***
consensus_7815#0 CACTAGCATATCGCTTGTCTTACAGGGTTGAAAATAGCTTCTTCTTTTGTTGTATTCACA 1560
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 ACAGGAATAAGGCAAGGGAGTAAATCCTTAAAAAAAACCAGGCTTTGGATTTCATATTTT 1620
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 GACCGTAGTGTTTAGTTCACGTGTGTTCATTG 1652
consensus_7815#1 --------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||