These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7817#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 795 fasta sequence [GAGGCCAAGAATCCCGCACGATNGGTGACAACGAGCAGATGATCGACGGGAAAAACAAAAACACGAAATACTTCCTCGCATGAAACGACTGCTGGCCACAAATATAAGCAAAATCATGAAGTT-TATCGACATTGGCGCCAACTTAACCGATCCGATGTACCAA-GGAATCTACAACGGATCGGCCAAACACGAACCCGATCTGCCGCATGTGCTAGAGCGCAGCTGGACCGGTGGGTTGGACAAAATCATCATCACGGTCGGGACGCTTGCCGACTGTGCGCCAACGTTTGAGATAGTGAAGAACGATGAAAGGCTGTTCGCCACGGTCGGTTGCCATCCGACACGGTGCGGTGAGTTTGTACCGGATCCGGAAGGTTATTTCGCCTCGCTCTGCCAGCAGATCGAGCAGCACCGGGAGAAGGTGGTAGCGATCGGCGAGTGTGGCCTCGATTACGATCGGCTGCAGTTCTGCGACAAAGCGATCCAGCAGCAGTACTTCGAGAAGCAGCTCGAGCTGGCCGCCAGGTACGATCTCC-C-GCTGTTCCTGCACTGCCGCAAC-GCGCACGACGACTTTGTCGCCA-TACTGC-AGCGAAACCGGGACAAGCTGCCCCGGCGTGGTGTGGTGCACACG-TTCGACGGTTCGCTCGAGGTGGCGGAAGCGCTTATAGCGGACGGGTACGCAATCGGGATCAACGGTTGTTCGCTGAAGACGGAGGAAAATCTGTCCGTGGCGGCCAAAATTCCGGACGCATCGATCATGCTCGAAACGGACAGCCCGTGGTGCGAGATACGGGC] [+] EMBL BX468233 [GAGGCCAAGAATCCCGCACGATNGGTGACAACGAGCAGATGATCGACGGGAAAAACAAAAACACGAAATACTTCCTCGCATGAAACGACTGCTGGCCACAAATATAAGCAAAATCATGAAGTT TATCGACATTGGCGCCAACTTAACCGATCCGATGTACCAA GGAATCTACAACGGATCGGCCAAACACGAACCCGATCTGCCGCATGTGCTAGAGCGCAGCTGGACCGGTGGGTTGGACAAAATCATCATCACGGTCGGGACGCTTGCCGACTGTGCGCCAACGTTTGAGATAGTGAAGAACGATGAAAGGCTGTTCGCCACGGTCGGTTGCCATCCGACACGGTGCGGTGAGTTTGTACCGGATCCGGAAGGTTATTTCGCCTCGCTCTGCCAGCAGATCGAGCAGCACCGGGAGAAGGTGGTAGCGATCGGCGAGTGTGGCCTCGATTACGATCGGCTGCAGTTCTGCGACAAAGCGATCCAGCAGCAGTACTTCGAGAAGCAGCTCGAGCTGGCCGCCAGGTACGATCTCCGCGGCTGTTCCTGCACTGNCGCAACGGCGCACGACGACTTTACCGGCAGTACTGCAAGCGAAACC GGACAAGCTGCCCC ] [+] EMBL BX622266 [ CTGGCCACAAATATAAGCAAAATCATGAAGTT TATCGACATTGGCGCCAACTTAACCGATCCGATGTACCAA GGAATCTACAACGGATCGGCCAAACACGAACCCGATCTGCCACATGTGCTAGAGCGTAGCTGGACCGGTGGGTTGGACAAAATCATCATCACGGTCGGGACGCTTGCCGACTGTGCGCCAACGTTTGAGATAGTGAAGAACGATGAAAGGCTGTTCGCCACGGTCGGCTGCCATCCGACACGGTGCGGTGAGTTTGTACCGGATCCGGAAGGTTATTTCGCCTCGCTCTGCCAGCAGATCGAGCAGCACCGGGAGAAGGTGGTAGCGATCGGCGAGTGTGGCCTCGATTACGATCGGCTGCAGTTCTGCGACAAAGCGATCCAGCAGCAGTACTTCGAGAAGCAGCTCGAGCTGGCCGCCAGGTACGATCTCC C GCTGTTCCTGCACTGCCGCAAC GCGCACGACGACTTTGTCGCCA TACTGC AGCGAAACCGGGACAAGCTGCCCCGGCGTGGTGTGGTGCACACG TTCGACGGTTCGCTCGAGGTGGCGGAAGCGCTTATAGCGGACGGGTACGCAATCGGGATCAACGGTTGTTCGCTGAAGACGGAGGAAAATCTGTCCGTGGCGGCCAAAATTCCGGACGCATCGATCATGCTCGAAACGGACAGCCCGTGGTGCGAGATACGGGC] [+] EMBL AL933258 [ tcccccgAGTTNTATCGACATTGGCGCC ACTTAACCGATCCGATGTACCAAGGGAATCTACAACGGATCGG CAAACACGAACCCGATCTGCCACATGTGCTA AGCGTAGCTGGACCGGTGGGTTGGACAAAATCATCATCACGGTCGGGACGCTTGCCGACTGTGCGCCAACGTTTGAGATAGTGAAGAACGATGAAAGGCTGTTCGCCACGGTCGGCTGCCATCCGACACGGTGCGGTGAGTTTGTACCGGATCCGGAAGGTTATTTCGCCTCGCTCTGCCAGCAGATCGAGCAGCACCGGGAGAAGGTGGTAGCGATCGGCGAGTGTGGCCTCGATTACGATCGGCTGCAGTTCTGCGACAAAGCGATCCAGCAGCAGTACTTCGAGAAGCAGCTCGAGCTGGCCGCCAGGTACGATCTCC C GCTGTTCCTGCACTGGCGCAAC GCGCACGACGACTTTGTCGCCA TACTGC AGCGAAACCGGGACAAGCTGCCCCGGCGTGGTGTGGTGCACACGTTTCGACGGTTCGCTCG ] [+] EMBL AGA285178 [ TGTACCAA GGAATCTACAACGGATCGGCCAAACACGAACCCGATCTGCCGCATGTGCTAGAGCGCAGCTGGACCGGTGGGTTGGACAAAATCATCATCACGGTCGGGACGCTTGCCGACTGTGCGCCAACGTTTGAGATAGTGAAGAACGATGAAAGGCTGTTCGCCACGGTCGGTTGCCATCCGACACGGTGCGGTGAGTTTGTACCGGATCCGGAAGGTTATTTCGCCTCGCTCTGCCAGCAGATCGAGCAGCACCGGGAGAAGGTGGTAGCGATCGGCGAGTGTGGCCTCGATTACGATCGGCTGCAGTTCTGCGACAAAGCGATCCAGCAGCAGTACTTCGAGAAGCAGCTCGAGCTGGCCGCCAGGTACGATCTCC C GCTGTTCCTGCACTGCCGCAAC GCGCA ] consensusID : consensus_7817#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [GCCCAGGCTTTTTAAACGACTGCTGGCCACAAATATAGCAAAATCATTAAGTTTATCTGACATTGGCGCCAACTTAACCGATCCGATGTACCAAGGAATCTACAACGGATCGGCCAAACACGAACCCGATCTGCCACATGTGCTAGAGCGTAGCTGGACCGGTGGGTTGGACAAAATCATCATCACGGTCGGGACGCTTGCCGACTGTGCGCCAACGTTTGAGATAGTGAAGAACGATGGCTGTTCGCCACGGTCGGCTGCCATCCGACACTGGTGCGGTGAGTTTGTACCGGATCCGGAAGGTTATTTCGNCTCGCTCTGCCAGCAGATCGAGCAGCACCGGGAGAAGGTGGTAGCGATCGGCCGAGTGTGGGCTCGATTACGATCGGCTGCAGTTCTGCGACAAAGCGATCCAGCAGCAGTACTTCGAGAAGCAGCTCGAGCTGGCGCCAGGTACGATCTCCCGCTGTTCCTGCACTGGCGGGAACGCGCACGACGACTTTGTCGCCATACTGCAGCGAAAACGGGACAAGCTGGCCCGGCGTGGTGTGGTGCACACGTTCGACGGTTCGATCGANAGTGGCTGGAAGCGCTTATTAGCGGACGGGTACGCAATCGGGATCAACGGATGTTCGCTGAAGACGGAGGAAAATCTGTCCGTGGCGGCAAAATTCCGGGACGGCANTTCGAT] [+] EMBL AL697629 [GCCCAGGCTTTTTAAACGACTGCTGGCCACAAATATAGCAAAATCATTAAGTTTATCTGACATTGGCGCCAACTTAACCGATCCGATGTACCAAGGAATCTACAACGGATCGGCCAAACACGAACCCGATCTGCCACATGTGCTAGAGCGTAGCTGGACCGGTGGGTTGGACAAAATCATCATCACGGTCGGGACGCTTGCCGACTGTGCGCCAACGTTTGAGATAGTGAAGAACGATGGCTGTTCGCCACGGTCGGCTGCCATCCGACACTGGTGCGGTGAGTTTGTACCGGATCCGGAAGGTTATTTCGNCTCGCTCTGCCAGCAGATCGAGCAGCACCGGGAGAAGGTGGTAGCGATCGGCCGAGTGTGGGCTCGATTACGATCGGCTGCAGTTCTGCGACAAAGCGATCCAGCAGCAGTACTTCGAGAAGCAGCTCGAGCTGGCGCCAGGTACGATCTCCCGCTGTTCCTGCACTGGCGGGAACGCGCACGACGACTTTGTCGCCATACTGCAGCGAAAACGGGACAAGCTGGCCCGGCGTGGTGTGGTGCACACGTTCGACGGTTCGATCGANAGTGGCTGGAAGCGCTTATTAGCGGACGGGTACGCAATCGGGATCAACGGATGTTCGCTGAAGACGGAGGAAAATCTGTCCGTGGCGGCAAAATTCCGGGACGGCANTTCGAT] consensusID : consensus_7817#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [CCGGTTCGGTGGGCTGCACTTCTTCAACCCCGTGCCGGTCATGAAGCTGCTCGAGATCATCCGCACCGACCGGACGTCGGACGAAACGTTCCAGGCGCTGCAGGCGTTCGGACAGCGGCTGGGCAAGGCCTGCATCACGTGCAAGGATACGCCCGGGTTCGTGGTGAACCGGCTGCTCGTGCCGTACATGGCGGAAGCGATCCGGCTGCTCGAGCGGGGCGATGCGTCGCCGCGCGACATCGACACGGCGATGAAGCTCGGCGCCGGCTACCCGATGGGACCGATCGAGCTGGTCGACTACGTCGGGCTGGACACGACCAACAACATCCTACAGGGATGGCACGAGAAGTTCCCGAACGATCCGCTGTTTGTGCCGATCCAGTCGCTCCAGAAGCTCGTCAGCGAGGGCAAACTGGGGGTGAAGAGTGGCGAAGGGTTCTATTCCTACAAAAAGTGAGCCAAGGAGAGAGAGAGACGCTGAGGATG] [+] EMBL BM590133 [CCGGTTCGGTGGGCTGCACTTCTTCAACCCCGTGCCGGTCATGAAGCTGCTCGAGATCATCCGCACCGACCGGACGTCGGACGAAACGTTCCAGGCGCTGCAGGCGTTCGGACAGCGGCTGGGCAAGGCCTGCATCACGTGCAAGGATACGCCCGGGTTCGTGGTGAACCGGCTGCTCGTGCCGTACATGGCGGAAGCGATCCGGCTGCTCGAGCGGGGCGATGCGTCGCCGCGCGACATCGACACGGCGATGAAGCTCGGCGCCGGCTACCCGATGGGACCGATCGAGCTGGTCGACTACGTCGGGCTGGACACGACCAACAACATCCTACAGGGATGGCACGAGAAGTTCCCGAACGATCCGCTGTTTGTGCCGATCCAGTCGCTCCAGAAGCTCGTCAGCGAGGGCAAACTGGGGGTGAAGAGTGGCGAAGGGTTCTATTCCTACAAAAAGTGAGCCAAGGAGAGAGAGAGACGCTGAGGATG] consensusID : consensus_7817#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 410 fasta sequence [GGGTGATGCGGTGCGGTGCGCTGCGTCCTTGGCGGAGGGATGATATCAAAGATGTAGCATAACAAAGACGTAATAAGCTCTTAGTGCTCTAGTGTTGCCATAATTAGTAGTATGTACAACAAAGTGTCTCCGCTCTGGCCCCGCTATCCCCTATTACAACAACACCCCTCGAACAGTTTTTATATATTTTTCGCACACACACACACTCACTAGCAATAGAGCAACAAACACGCGCCTGTGGTGATAGCAAGAGAGAAAATGGTGCGTGTGGTGTTCTGTTGTGGTTCGATGCATCGGAAGCATGCCCGATAAAGATTGGCTTGCAGAAGAGAAGACTCCGTTACGACCCGATACAATATGATACGTTATTTATCTGAAGCAATGCGCGGGATGGTGGTTTTGGAATCGTT] [+] EMBL AGA285467 [GGGTGATGCGGTGCGGTGCGCTGCGTCCTTGGCGGAGGGATGATATCAAAGATGTAGCATAACAAAGACGTAATAAGCTCTTAGTGCTCTAGTGTTGCCATAATTAGTAGTATGTACAACAAAGTGTCTCCGCTCTGGCCCCGCTATCCCCTATTACAACAACACCCCTCGAACAGTTTTTATATATTTTTCGCACACACACACACTCACTAGCAATAGAGCAACAAACACGCGCCTGTGGTGATAGCAAGAGAGAAAATGGTGCGTGTGGTGTTCTGTTGTGGTTCGATGCATCGGAAGCATGCCCGATAAAGATTGGCTTGCAGAAGAGAAGACTCCGTTACGACCCGATACAATATGATACGTTATTTATCTGAAGCAATGCGCGGGATGGTGGTTTTGGAATCGTT] [+] EMBL AGA281905 [ TTTTTTTTTTTTTCGCACACACACACACTCACTAGCAATAGAGCAACAAACACGCGCCTGTGGTGATAGCAAGAGAGAAAATGGTGCGTGTGGTGTTCTGTTGTGGTTCGATGCATCGGAAGCATGCCCGATAAAGATTGGCTTGCAGAAGAGAAGACTCCGTTACGACCCGATACAATATGAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7817#0 GAGGCCAAGAATCCCGCACGATNGGTGACAACGAGCAGATGATCGACGGGAAAAACAAAA 60 consensus_7817#1 ------------------------------------------------------------ consensus_7817#2 ------------------------------------------------------------ consensus_7817#3 ------------------------------------------------------------ consensus_7817#0 ACACGAAATACTTCCTCGCATGAAACGACTGCTGGCCACAAATATAAGCAAAATCATGAA 120 consensus_7817#1 ---------GCCCAGGCTTTTTAAACGACTGCTGGCCACAAATATA-GCAAAATCATTAA 50 consensus_7817#2 ------------------------------------------------------------ consensus_7817#3 ------------------------------------------------------------ consensus_7817#0 GTTTATC-GACATTGGCGCCAACTTAACCGATCCGATGTACCAAGGAATCTACAACGGAT 179 consensus_7817#1 GTTTATCTGACATTGGCGCCAACTTAACCGATCCGATGTACCAAGGAATCTACAACGGAT 110 consensus_7817#2 ------------------------------------------------------------ consensus_7817#3 ------------------------------------------------------------ consensus_7817#0 CGGCCAAACACGAACCCGATCTGCCGCATGTGCTAGAGCGCAGCTGGACCGGTGGGTTGG 239 consensus_7817#1 CGGCCAAACACGAACCCGATCTGCCACATGTGCTAGAGCGTAGCTGGACCGGTGGGTTGG 170 consensus_7817#2 ----------CCGGTTCGGTGGGCTGCACTTCTTCAACCCCGTGCCGGTCATGAAGCTGC 50 consensus_7817#3 -----------------------------------------GGGTGATGCGGTGCGGTGC 19 * * ** consensus_7817#0 ACAAAATCATCATCACGGTCGGGACGCTTGCCGACTGTGCGCCAACGTTTGAGATAGTGA 299 consensus_7817#1 ACAAAATCATCATCACGGTCGGGACGCTTGCCGACTGTGCGCCAACGTTTGAGATAGTGA 230 consensus_7817#2 TCGAGATCATCCGCACCGACCGGACGTCGGACGA---------AACGTTCCAGGCGCTGC 101 consensus_7817#3 GCTGCGTCCTTGGCGGAGGGATGATATCA--------------AAGATGTAGCATAACAA 65 * ** * * * ** ** * consensus_7817#0 AGAACGA-TGAAAGGCTGTTCGCCACGGTCGGTTGCCATCCGACAC-GGTGCGGT-GAGT 356 consensus_7817#1 AGAACGA-TG----GCTGTTCGCCACGGTCGGCTGCCATCCGACACTGGTGCGGT-GAGT 284 consensus_7817#2 AGGCGTT-CGGACAGCGGCTGGGCAAGGCCTGC-ATCACGTG-CAAGGATACGCCCGGGT 158 consensus_7817#3 AGACGTAATAAGCTCTTAGTGCTCTAGTGTTGCCATAATTAGTAGTATGTACAACAAAGT 125 ** * * * * * * * * ** consensus_7817#0 TTGTACCGGATCCGGAAGGTTATTTCGCCTCGCTCTGCCAGCAGATCGAGCAGCACCGGG 416 consensus_7817#1 TTGTACCGGATCCGGAAGGTTATTTCGNCTCGCTCTGCCAGCAGATCGAGCAGCACCGGG 344 consensus_7817#2 TCGTGGTGAA-CCGGCTGCTCGTGCCGTA-CATGGCGGAAGC-GATCCGGCTGCTC---G 212 consensus_7817#3 GTCT-CCGCTCTGGCCCCGCTATCCCCTATTACAACAACACC-CCTCGAACAGTTTT--- 180 * * * * * * * ** * * consensus_7817#0 AGAAGGTGGTAGCGATCGGC-GAGTGTGGCCTCGATTACGATCG-GCTGCAGTTCTGCGA 474 consensus_7817#1 AGAAGGTGGTAGCGATCGGCCGAGTGTGGGCTCGATTACGATCG-GCTGCAGTTCTGCGA 403 consensus_7817#2 AGCGGGGCGATGCG-TCGCC---GCGCGACATCGAC-ACGGC---GATGAAGCTCGGCGC 264 consensus_7817#3 -----TATATATTTTTCGCACACACACACACTCACTAGCAATAGAGCAACAAACACGCGC 235 *** ** * * * *** consensus_7817#0 CAAAGCGATCCAGCAGCAGTACTTCGAGAAGCAGCTCGAGCTGGCCGCCAGGTACGATCT 534 consensus_7817#1 CAAAGCGATCCAGCAGCAGTACTTCGAGAAGCAGCTCGAGCTGGC-GCCAGGTACGATCT 462 consensus_7817#2 CG--GCTACCCGATGGGACCGATCGAGCTGGTCGACTACGTCGG--GCTGGACACGACCA 320 consensus_7817#3 C-------TGTGGTGATAGCAAGAGAGAAAATGGTGCGTG-TGGTGTTCTGTTGTGGTTC 287 * * * * ** * * consensus_7817#0 CCCGCTGTTCCTGCACTGCCGC-AACGCGCACGACGACTTTGTCGCCATACTGCAGCGAA 593 consensus_7817#1 CCCGCTGTTCCTGCACTGGCGGGAACGCGCACGACGACTTTGTCGCCATACTGCAGCGAA 522 consensus_7817#2 ACAAC--ATCCTACAGGGATG-------GCACGAGAAGTTCCCGAACGATCCGCTGTTTG 371 consensus_7817#3 GATGCATCGGAAGCATGCCCG---------ATAAAGATTGGCTTGCAGAAGAGAAG--AC 336 * ** * * * * * * * consensus_7817#0 ACCGGGACAAGCTGCCCCGGCGTGGTGTGGTGCACACGTTCGACGGTTCGCTCGAG-GTG 652 consensus_7817#1 AACGGGACAAGCTGGCCCGGCGTGGTGTGGTGCACACGTTCGACGGTTCGATCGANAGTG 582 consensus_7817#2 TGCCGATCCAGTCGCTCCAG---AAGCTCGTCAGCGAGGGCAAACTGGGGGTGAAGAGTG 428 consensus_7817#3 TCCGTTACGACCCGATACAATATGATACGTTATTTATCTGAAGCAATGCGCGGGATGGTG 396 * * * * * * * * *** consensus_7817#0 GC-GGAAGCGCTTAT-AGCGGACGGGTACGCAATCGGGATCAACGGTTGTTCGCTGAAGA 710 consensus_7817#1 GCTGGAAGCGCTTATTAGCGGACGGGTACGCAATCGGGATCAACGGATGTTCGCTGAAGA 642 consensus_7817#2 GCGAAGGGTTCTATTCCTACAAAAAGTGAGCCAAGGAGAGAGAGAGA----CGCTGAGGA 484 consensus_7817#3 GTTTTGGAATCGTT---------------------------------------------- 410 * * consensus_7817#0 CGGAGGAAAATCTGTCCGTGGCGGCCAAAATTCCGGACGCATCGATCATGCTCGAAACGG 770 consensus_7817#1 CGGAGGAAAATCTGTCCGTGGCGGCAAAATTCCGGGACGGCANTTCGAT----------- 691 consensus_7817#2 TG---------------------------------------------------------- 486 consensus_7817#3 ------------------------------------------------------------ consensus_7817#0 ACAGCCCGTGGTGCGAGATACGGGC 795 consensus_7817#1 ------------------------- consensus_7817#2 ------------------------- consensus_7817#3 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||