These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7831#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1087 fasta sequence [ACCCACGCGTCCGCGGACGCGTGGCGCAACACGATGGAGAGCACGAAATCTGAACCGCACAGAGTATTGGAACTTTTCAGCGGTATAGGCGGAATGCGTATGGCGTTGGAGCAAGCTGGGAAAG-AGTTTGAAATCGTCTCCGCCATCGACGTGAATCCCATCGCAAACGAAGTTTACAAGCACAATTTCGGCGCAAAAACGGTCCGCAATGGAAATATACTGAGCCTAACGGCGGAGAAAGTAACCAAACTAAAGGTCGATACGAT-CCTGATGTCGCCGCCCTGTCAGCCCTTCACGAGGAACGGA-AAGTTTAACGATATCAACGATCGAAGGAG-CGACCCATTTCTGCACATTTGCG-AGCTGCTGGA-TAAGATGCCGCTGGTAAAGTTCATAC-TGATGGAAAACGTGAAAGGGTTTGAAAA-CTCACAAGCC-TGTGAGATGTACAA-GGCGCG-CCTGC-GGG-AGG-CAGGTTTCCAC-TACCAGCAGTA-CA-TACTATCGCCGCACCAGTTTGGCGTGCCCAAC-ACTCGCCACCGGTACTACTGTATCGC-AAAACG-CCATGGAGCGGATTTTAAATGGA-AGAGTGAAGAT-ATTATTACCAC-ACCGCAATCAGG-CTGCGGTGC-AAAG---CAAACG---TTGGTTGGAA-CGAT-TGTGG-ACAC-GCAGCAAGACGCATTGGAACAGTATGGGTTGAAAAGTGC-TACATTACTAAA-GCATCTTCCACTGATGGACGTATGCACGCCGGAATCCACCAACTCGATGTGC-TTTACGAAAGCGTACACGCATTACGCGGAAGGTACGGGTTCGGTGTACTGTCCACTTTCTAGGCAGGAATTCGACAGGACCTATGCCCTTGCGATGGGTGCCGAGGAGGACGAGGATCGAAAGCTTTCTGTGCTGCGGGAACTGCGCGTGCGATACTTTACCCCGAAAGAAGTGGCGCGATTTATGAGCTTTCCAGAGCATTTTAGCTTCCCAGATACGGTTACGAACAAGCAACGTTATCGTGTGCTGGGTAATAGCATAAACGTGTTTGTCGTCAGTGTGCTACTACACGAGCTGTAAATAAATACGTTGAATTTTGTGCAGTTAAAAAAAA] [+] EMBL BM606519 [ACCCACGCGTCCGCGGACGCGTGGGGCAACACGATGGAGAGCACGAAATCTGAACCGCACAGAGTATTGGAACTTTTCAGCGGTATAGGCGGAATGCGTATGGCGTTGGAGCAAGCTGGGAAAG AGTTTGAAATCGTCTCCGCCATCGACGTGAATCCCATCGCAAACGAAGTTTACAAGCACAATTTCGGCGCAAAAACGGTCCGCAATGGAAATATACTGAGCCTAACGGCGGAGAAAGTAACCAAACTAAAGGTCGATACGAT CCTGATGTCGCCGCCCTGTCAGCCCTTCACGAGGAACGGA AAGTTTAACGATATCAACGATCGAAGGAG CGACCCATTTCTGCACATTTGCG AGCTGCTGGA TAAGATGCCGCTGGTAAAGTTCATAC TGATGGAAAACGTGAAAGGGTTTGAAAA CTCACAAGCC TGTGAGATGTACAA GGCGCG CCTGC GGG AGG CAGGTTTCCAC TACCAGCAGTA CA TACTATCGCCGCACCAGTTTGGCGTGCCCAAC ACTCGCCACCGGTACTACTGTATCGC AAAACG CCATGGAGCGGATTTTAAATGGA AGAGTGAAGAT ATTATTACCAC ACCGCAATCAGG CTGCGGTGC AAAG CAAACG TTGGTTGGAA CGAT TGTGG ACAC GCAGCAAGACGCATTGGAACAGTATGGGTTGAAAAGTGC TACATTACTAAA GCA ] [+] EMBL CNS08MES [ caaaaCGCAACACGATGGAGAGCACGAAATCTGAACCGCACAGAGTGTTGGAACTTTTCAGTGGTATTGGCGGAATGCGAATGGCATTGGAGCGTGCTGGGAAAGCAGTTTGAAATCGTCTCCGCCATCGACGTGAACCCAATCGCAAACGAAGTTTACAAACACAATTTCGGCGCAAAAACGGTCCGCAATGGAAATATACTGAGCCTAACGGCGGAGAAAGTAACCAAACTAAAGGTCGATACGAT CCTGATGTCGCCGCCCTGTCAGCCCTTCACGAGGAACGGA AAGTTTAACGATATCAACGATCGAAGGAG CGACCCATTTCTGCACATTTGCG AGCTGCTGGA TAAGATGCCGCTGGTAAAGTTCATAC TGATGGAAAACGAAAAAGGGTTTGAAAA CTCACAAGCC TGTGAGATGTACAA GGCGCG CCTGCGGGG AGG CAGGTTTCCAC TACCAGCAGTA CA TACTATCGCCGCACCAGTTTGGCGTGCCCAAC ACTCGCCACCGGTACTACTGTATCGC AAAACG CCATGGAGCGGATTTTAAATGGA AGAGTGAAGAA ATTATTACCAC ACCGCAAGCAGG CTGCGGTGC AAAA CAAACG TTGGTTGGAA CGAT TGTGG ACAC GCAGCAAGACGCATTGGAACAGTATGGGTTGAAAAGTGC TACATTATTAAA GCATCTTCCACTGATGGACGTATGCACGCCGGAATCCACCAACTCGATGTGC TTTACGAAAGCGTACACGCATTACGCGGAAGGTACGGGTTCGGTGTACTGTCCACTTTCTAGGCAGGAATTCGACAGGACCTATGCCCTTGCGATGGGTGCCGAGGAGGACGAGGATCGAAAGCTTTCTGTGCTGCGGGAACTGCGCGTGCGATACTTTACCCCGAAAGAAGTGGCGCGATTTATGAGCTTTCCAGAGCATTTTAGCTTCCCAGATACGGTTACGAACAAGCAACGTTATCGTGTGCTGGGTAAT ] [+] EMBL BX625706 [ CGCAACACGATGGAGAGCACGAAATCTGAACCGCACAGAGTATTGGAACTTTTCAGCGGTATAGGCGGAATGCGTATGGCGTTGGAGCAAGCTGGGAAAG AGTTTGAAATCGTCTCCGCCATCGACGTGAATCCCATCGCAAACGAAGTTTACAAGCACAATTTCGGCGCAAAAACGGTCCGCAATGGAAATATACTGAGCCTAACGGCGGAGAAAGTAACCAAACTAAAGGTCGATACGAT CCTGATGTCGCCGCCCTGTCAGCCCTTCACGAGGAACGGA AAGTTTAACGATATCAACGATCGAAGGAG CGACCCATTTCTGCACATTTGCG AGCTGCTGGA TAAGATGCCGCTGGTAAAGTTCATAC TGATGGAAAACGTGAAAGGGTTTGAAAA CTCACAAGCC TGTGAGATGTACAA GGCGCG CCTGC GGG AGG CAGGTTTCCAC TACCAGCAGTA CA TACTATCGCCGCACCAGTTTGGCGTGCCCAAC ACTCGCCACCGGTACTACTGTATCGC AAAACG CCATGGAGCGGATTTTAAATGGA AGAGTGAAGAT ATTATTACCAC ACCGCAATCAGG CTGCGGTGC AAAG CAAACG TTGGTTGGAA CGAT TGTGG ACAC GCAGCAAGACGCATTGGAACAGTATGGGTTGAAAAGTGC TACATTACTAAA GCATCTTCCACTGATGGATGTATGCACGGCGGAATCCACCAACTCGATGTGCTTTTACGAAAGCGTACACGCA ] [+] EMBL CNS09OK7 [ CGATGGAGAGCACGAAATCTGAACCGCACAGAGTATTGGAACTTTTCAGCGGTATAGGCGGAATGCGTATGGCGTTGGAGCAAGCTGGGAAAG AGTTTGAAATCGTCTCCGCCATCGACGTGAATCCCATCGCAAACGAAGTTTACAAGCACAATTTCGGCGCAAAAACGGTCCGCAATGGAAATATACTGAGCCTAACGGCGGAGAAAGTAACCAAACTAAAGGTCGATACGAT CCTGATGTCGCCGCCCTGTCAGCCCTTCACGAGGAACGGA AAGTTTAACGATATCAACGATCGAAGGAG CGACCCATTTCTGCACATTTGCGTAGCTGCTGGA TAAGATGCCGCTGGTAAAGTTCATAC TGATGGAAAACGTGAAAGGGTTTGAAAA CTCACAAGCCGTGTGAGATGTACAA GGCGCG CCTGC GGG AGG CAGGTTTCCAC TACCAGCAGTA CA TACTATCGCCGCACCAGTTTGGCGTGCCCAAC ACTCGCCACCGGTACTACTGTATCGC AAAACG CCATGGAGCGGATTTTAAATGGA AGAGTGAAGAT ATTATTACCAC ACCGCAATCAGG CTGCGGTGC AAAG CAAACG TTGGTTGGAA CGAT TGTGG ACAC GCAGCAAGACGCATTGGAACAGTATGGGTTGAAAAGTGC TACATTACTAAA GCATCTTCCACTGATGGATGTATGCACGGCGGAATCCACCAACTCGGTGTGC TTTACGAAAGCGTACACGCATTACGCGGAAGGTACGGGTTCGGTGTACTGTCCACTTTCTAGGCAGGAATTCGACAAGACCTATGCCCTTGCGATGGGTGCCGAGGAGGACGAGGATCGAAAGCTTGCTGTGCTGCGGGAACTGCGCGTGCGATACTTTAC ] [+] EMBL AL695623 [ cccgaggttATGGAGAGCACGAAATCTGAACCGCACAGAGTATTGGAACTTTTCAGCGGTATAGGCGGAATGCGTATGGCGTTGGAGCAAGCTGGGAAAG AGTTTGAAATCGTCTCCGCCATCGACGTGAATCCCATCGCAAACGAAGTTTACAAGCACAATTTCGGCGCAAAAACGGTCCGCAATGGAAATATACTGAGCCTAACGGCGGAGAAAGTAACCAAACTAAAGGTCGATACGATCCCTGATGTCGCCGCCCTGTCAG CCTTCACGAGGAACGGACAAGTTTAACGATATCAACGATCGAAGGAGACGA CCATTTCTGCACATTTGCG AGCTGCTGGATTAAGATGCCGCTGGTAAAGTTCATACTTGATGGAAAACGTGAAAGGGTTTGAAAACCTCACAAGCC TGTGAGATGTACAAGGGCGCGCCCTGCTGGGAAGGACAGGTTTACACATACCAGCAGTACCATTACTATCG CGGACCAGTTNGGAGTGCCCAACAACTCGCCACCGGTACTACTGTATCGCAAAAACGCCCATGGAGCGGATTTTAAATGGANAGAGTGAAGATAATTATTACCACAACNGAAATCAGGNTTGGAGTGCAAAAGACNCAAACGATATGGGTTGGAACCGATATGTGGAACACAGCAGGAAGACGCATTGGAACAGTATGGGTTGAAAAGTGCGTACATTACTAAAGGNATCTT ] [-] EMBL CNS08MET [ aa CAAACG TTGGTTGGAA CGAT TGTGG ACAC GCAGCAAGACGCATTGGAACAGTATGGGTTGAAAAGTGC TAAATTATTAAA GCATCTTCCACTGATGGACGTATGCACGCCGGAATCCACCAACTCGATGTGC TTTACGAAAGCGTACACGCATTACGCGGAAGGTACGGGTTCGGTGTACTGTCCACTTTCTAGGCAGGAATTCGACAGGACCTATGCCCTTGCGATGGGTGCCGAGGAGGACGAGGATCGAAAGCTTTTTGTGCTGCGGGAACTGCGCGTGCGATACTTTACCCCGAAAGAAGTGGCGCGATTGATGAGCTTTCCAGAGCATTTTAGCTTCCCAGATACGGTTACGAACAAGCAACGTTATCGTGTGCTGGGTAATAGCATAAACGTGTTTGTCGTCAGTGTGCTACTACACGAGCTGTAAATAAATACGTTGAATTTTGTGCAGTTAAAAAAAA] [-] EMBL CNS09OK8 [ GCTTTCCAGAGCATTTTAGCTTCCCCGATACGGTTACGAACAAGCAACGTTTTCGTGTGCTGGGTAATAGCATAAACGTGTTTGTCGTCCGTG ] consensusID : consensus_7831#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [TCTGAACCGCACAGAGTATTGGAACTTTTCAGCGGTATATGGGCGGCAATGCGTATGGCCGTTGGANCATGCGTGNGAAACAGTNTTGATAATCGNCTCCGTCNNCGACGTGACATCCCATCAGCAAAATTGAGAGTTCATANCGCCACCAATNNTCGTGAGCCCCATACGGGTCCGACANTTGGCAAATNATACTTGTCGGCCTACACGGCNGGTGCCAGCGTTGGCAATANCTACTAGAGTCCTAATCGCGGCAGTGCCTGATTTGTNCCNCGCTCCATGTGTACACNCTNACNACCGTAGAGTAGTCGNGCGACACGCTTGTTACAGGGACNTTTCAANGAGGAGTACAGCAGAGGAAGTCT] [+] EMBL AL694442 [TCTGAACCGCACAGAGTATTGGAACTTTTCAGCGGTATATGGGCGGCAATGCGTATGGCCGTTGGANCATGCGTGNGAAACAGTNTTGATAATCGNCTCCGTCNNCGACGTGACATCCCATCAGCAAAATTGAGAGTTCATANCGCCACCAATNNTCGTGAGCCCCATACGGGTCCGACANTTGGCAAATNATACTTGTCGGCCTACACGGCNGGTGCCAGCGTTGGCAATANCTACTAGAGTCCTAATCGCGGCAGTGCCTGATTTGTNCCNCGCTCCATGTGTACACNCTNACNACCGTAGAGTAGTCGNGCGACACGCTTGTTACAGGGACNTTTCAANGAGGAGTACAGCAGAGGAAGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7831#0 ACCCACGCGTCCGCGGACGCGTGGCGCAACACGATGGAGAGCACGAAATCTGAACCGCAC 60 consensus_7831#1 ------------------------------------------------TCTGAACCGCAC 12 ************ consensus_7831#0 AGAGTATTGGAACTTTTCAGCGGTATA--GGCGG-AATGCGTATGGC-GTTGGAGCAAGC 116 consensus_7831#1 AGAGTATTGGAACTTTTCAGCGGTATATGGGCGGCAATGCGTATGGCCGTTGGANCATGC 72 *************************** ***** ************ ****** ** ** consensus_7831#0 -TGGGAAAGAGTTTGAA--ATCGTCTCCGCCATCGACGTGA-ATCCCATCGCAAACGAAG 172 consensus_7831#1 GTGNGAAACAGTNTTGATAATCGNCTCCGTCNNCGACGTGACATCCCATC---AGCAAAA 129 ** **** *** * * **** ***** * ******** ******** * * ** consensus_7831#0 TTTACAAGCACAATTTCGGCGCAAAAACGGTCCGCAATGGAAATATACTGAGCCTAACGG 232 consensus_7831#1 TTGAGAG-------TTCATANCGCCACCAATNNTCGTGAGCCCCATAC-GGGTCCGACAN 181 ** * * *** * * * * * * **** * * * ** consensus_7831#0 CGGAGAAAGTAACCAAACTAAAGGTCGATACGATCCTGATGTCGCCGCCCTGTCAGCCCT 292 consensus_7831#1 TTGGCAAATNATAC---TTGTCGGCCTACACGG--CNGGTGCCAGCG--TTGGCAATANC 234 * *** * * * ** * * *** * * ** * ** ** ** consensus_7831#0 TCACGAGGAACGGAAAGTTTAACGATATCAACGATCGAAGGAGCGACCCATTTCTGCACA 352 consensus_7831#1 T-ACTAGAGTCCTAAT-CGCGGCAGTGCC--TGATTTGTNCCNCGCTCCATGTGTACACN 290 * ** ** * ** * * * *** ** **** * * *** consensus_7831#0 TTTGCGAGCTGCTGGATAAGATGCCGCTGGTAAAGTTCATACTGATGGAAAACGTGAAAG 412 consensus_7831#1 CTNACNA-CCGTAGAGTA----GTCG--NGCGACACGCTTGTTACAGGGACNTTTCAANG 343 * * * * * * ** * ** * * * * * ** * * ** * consensus_7831#0 GGTTTGAAAACTCAC-AAGCCTGTGAGATGTACAAGGCGCGCCTGCGGGAGGCAGGTTTC 471 consensus_7831#1 AGGAGTACAGCAGAGGAAGTCT-------------------------------------- 365 * * * * * *** ** consensus_7831#0 CACTACCAGCAGTACATACTATCGCCGCACCAGTTTGGCGTGCCCAACACTCGCCACCGG 531 consensus_7831#1 ------------------------------------------------------------ consensus_7831#0 TACTACTGTATCGCAAAACGCCATGGAGCGGATTTTAAATGGAAGAGTGAAGATATTATT 591 consensus_7831#1 ------------------------------------------------------------ consensus_7831#0 ACCACACCGCAATCAGGCTGCGGTGCAAAGCAAACGTTGGTTGGAACGATTGTGGACACG 651 consensus_7831#1 ------------------------------------------------------------ consensus_7831#0 CAGCAAGACGCATTGGAACAGTATGGGTTGAAAAGTGCTACATTACTAAAGCATCTTCCA 711 consensus_7831#1 ------------------------------------------------------------ consensus_7831#0 CTGATGGACGTATGCACGCCGGAATCCACCAACTCGATGTGCTTTACGAAAGCGTACACG 771 consensus_7831#1 ------------------------------------------------------------ consensus_7831#0 CATTACGCGGAAGGTACGGGTTCGGTGTACTGTCCACTTTCTAGGCAGGAATTCGACAGG 831 consensus_7831#1 ------------------------------------------------------------ consensus_7831#0 ACCTATGCCCTTGCGATGGGTGCCGAGGAGGACGAGGATCGAAAGCTTTCTGTGCTGCGG 891 consensus_7831#1 ------------------------------------------------------------ consensus_7831#0 GAACTGCGCGTGCGATACTTTACCCCGAAAGAAGTGGCGCGATTTATGAGCTTTCCAGAG 951 consensus_7831#1 ------------------------------------------------------------ consensus_7831#0 CATTTTAGCTTCCCAGATACGGTTACGAACAAGCAACGTTATCGTGTGCTGGGTAATAGC 1011 consensus_7831#1 ------------------------------------------------------------ consensus_7831#0 ATAAACGTGTTTGTCGTCAGTGTGCTACTACACGAGCTGTAAATAAATACGTTGAATTTT 1071 consensus_7831#1 ------------------------------------------------------------ consensus_7831#0 GTGCAGTTAAAAAAAA 1087 consensus_7831#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||