These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 788 fasta sequence [TCTTACTGCCATGCTACAGATGCGGATCATCTCTGTTCCACTACTTTCAGCGGCGGTTTTGTTGCAACCGCTGCTGGCAGCTCCGATATTTTGGTTTCTGCCGTGGAGTTTCCCTGCACTGTCTCCAACCACCACTACTTTGGCGACCACTTCCGGGACGGCGGCATCGAGTGGCGCTTCCAATTCTTCGAACGTGTCGGTCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGATGACTACGGCACGAACATAACGAACGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGTCACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTCGACCAATGGAACGGTTATAACCATT-GGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATAT-GATGCT-GGCGGACACTGGTA-GCGCGACCATAAA-TGCCAA-CGA-AACGTACAC-TCCGCTACTAT-CCGCTAT-TAGACTTT-TNAA-GAACTT-TTT-CTCTT-CCCTCTTCAGTAAACAA-GGCTCACAAAC-TTAGCGTTCGGTGACGTTAGCTGTGACCAAGAAACTAAAAATGTACTCCATAAG-TTTNGTTCGTGAAGTNAANTGCAN-TNACACAGCGCA-CCTTT-AGC-ANCTAGTACTANCNG-TAGC-NNCANTAN-AATCAANAAACTAAANAATCGGCANCNACNCTGCNNACCGCTGGNTCCACTTAGTTCTANTNNTTCATT] [+] EMBL CF541645 [TCTTACTACCATGCTACAGATGCGGATCATCTCTGTTCCACTACCTTCAGCGGCGGTTTTGTTGCAACCGCTGCTGGCAGCTCCGATATTTTGGTTTCTGCCGTGGAGTTTCCCTGCACTGTCTCCAACCACCACTACTTTGGCGACCACTTCCGGGACGGCGGCATCGAGTGGCGCTTCCAATTCTTCGAACGTGTCGGTCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGATGACTACGGCACGAACATAACGAACGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGTCACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTCGACCAATGGAACGGTTATAACCATT GGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATAT GATGCT GGCGGACACTGGTA GCGTGACCATAAA TGCCAA CGA AACGTACAC TCCGCTACTAT CCGCTAT TAGACTTT TNAA GAACTT TTT CTCTN NCCTCTNCAGTAAACAA GGCTCACAAAC TTAGCGTTCGGTGACGTTAGCTGTGACNAAGAAACTAAAAATGCACTCNATAAG TNTNGTNCGTGANGTNAANTGCAN TNACACAGCGCA CCTTT AGC ANCTAGTACTANCNG TAGC NNCANTAN AATCAANAAACTAAANAATCGGCANCNACNCTGCNNACCGCTGGNTCCACTTAGTTCTANTNNTTCATT] [+] EMBL CF541985 [ TTACTGCCATGCTACAGATGCGGATCATCTCTGTTCCACTACTTTCAGCGGCGGTTTTGTTGCAACCGCTGCTGGCAGCTCCGATATTTTGGTTTCTGCCGTGGAGTTTCCCTGCACTGTCTCCAACCACCACTACTTTGGCGACCACTTCCGGGACGGCGGCATCGAGTGGCGCTTCCAATTCTTCGAACGTGTCGGTCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGATGACTACGGCACGAACATAACGAACGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGTCACCGACGCGGATTTGGCCAAGCTTGAACGAAGACTGCGTCAAGCGGCCGATGAAGGGTCGACCAATGGAACGGTTATAACCATT GGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATAT GATGCT GGCGGACACTGGTA GCGCGACCATAAA TGCCAA CGA AACGTACAC TCCGCTACTAT CCGCTAT TAGACTTT TNAA GAACTT TTT CTCTTCCCCTCTTCAGTAAACAANNGCTCACNAACNTTAGCGTTCGGTGACGTTAGCTGTGACCAGGAAAC ] [+] EMBL AGA302660 [ CTGCCATGCTACAGATGCGGATCATCTCTGTTCCACTACTTTCAGCGGCGGTTTTGTTGCAACCGCTGCTGGCAGCTCCGATATTTTGGTTTCTGCCGTGGAGTTTCCCTGCACTGTCTCCAACCACCACTACTTTGGCGACCACTTCCGGGACGGCGGCATCGAGTGGCGCTTCCAATTCTTCGAACGTGTCGGTCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGATGACTACGGCACGAACATAACGAACGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGTCACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTCGACCAATGGAACGGTTATAACCATT GGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATAT GATGCT GGCGGACACTGGTA GCGCGACCATAAA TGCCAA CGA AACGTACAC TCCGCTACTAT CCGCTAT TAGACTTT TTAA GAACTT TTT CTCTT CCCTCTTCAGTAAACAA GGCTCACAAAC TTAGCGTTCGGTGACGTTAGCTGTGACCAAGAAA ] [+] EMBL CF542010 [ GCTACAGATGCGGATCATCTCTGTTCCACTACTTTCAGCGGCGGTTTTGTTGCAACCGCTGCTGGCAGCTCCGATATTTTGGTTTCTGCCGTGGAGTTTCCCTGCACTGTCTCCAACCACCACTACTTTGGCGACCACTTCCGGGACGGCGGCATCGAGTGGCGCTTCCAATTCTTCGAACGTGTCGGTCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGATGACTACGGCACGAACATAACGAACGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGTCACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTCGACCAATGGAACGGTTATAACCATT GGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATAT GATGCT GGCGGACACTGGTA GCGCGACCATAAA TGCCAA CGA AACGTACAC TCCGCTACTAT CCGCTAT TAGACTTT TTAA GAACTT TTT CTCTT CCCTCTTCAGTAACCAA GGCTCACAAAC TTAGCGTTCGGTGACGTTAGCTGTGACCAAGAAACTAAAANTGTACTNCATAAG TTTTGTTCGTGAAGTNAAATGCANTTCACACAGCGCANCCTTTAAGCNANCTAGNACNAACNGNTAGCATNCANTANTAAT ] [+] EMBL CF542109 [ TACAGATGCGGATCATCTCTGTTCCACTACTTTCAGCGGCGGTTTTGTTGCAACCGCTGCTGGCAGCTCCGATATTTTGGTTTCTGCCGTGGAGTTTCCCTGCACTGTCTCCAACCCCCACTACTTTGGCGACCACTTCCGGGACGGCGGCATCGAGTGGCGCTTCCAATTCTTCGAACGTGTCGGTCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGATGACTACGGCACGAACATAACGAACGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGTCACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTCGACCAATGGAACGGTTATAACCATTGGGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATATNGATGCTGGGCGGACACTGGTANNCGCGACCATAAAGTGCCAANCGANAACGTACACTTCCGCTACTATNCCGCTATNNAAACTTTATNAAGGANCTTNTTTNCTCTT CC ] [+] EMBL BM651819 [ ccgGCGGATCATCTCTGTTCCACTACTTTCAGCGGCGGTTTTGTTGCAACCGCTGCTGGCAGCTCCGATATTTTGGTTTCTGCCGTGGAGTTTCCCTGCACTGTCTCCAACCACCACTACTTTGGCGACCACTTCCGGGACGGCGGCATCGAGTGGCGCTTCCAATTCTTCGAACGTGTCGGTCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGATGACTACGGCACGAACATAACGAACGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGTCACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTCGACCAATGGAACGGTTATAACCATT GGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATAT GATGCT GGCGGACACTGGTA GCGCGACCATAAA TGCCAA CGA AACGTACAC TCCGCTACTAT CCGCTAT TAGACTTT TTAA GAACTT TTT CTCTT CCCTCTTCAGTAAACAA GGCTCACAAAC TTAGCGTTCGGTGACGTTAGCTGTGACCAAGAAACTAAAAATGTACTCCATAAGTTTTGGTTCGTGAAGTt ] consensusID : consensus_7848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 761 fasta sequence [TCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGATGACTACGGCACGAACATAACGAGCGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGTCACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTCGACCAATGGAACGGTTATAACCATTGGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATATGATGCTGGCGGACACTGGTAGCGCGACCATAAATGCCAACGAAACGTACACTCCGCTACTATCCGCTATTAGACTTTTTAAGAACTTTTTCTCTTCCCTCCTCAGTAAACAAGGCTCACTAACTTAGCGTTCGGTGACGTTAGCTGTGACCAAGAAACTAAAAATGTACTCCATAAGTTTTGTTCGTGAAGTTAAATGCAATTCACACAGCGCACCTTTTAGCAACTAGTACTAACTGTTAGCATACATTATAATTCAAAGAAAACTAAAAAAATGCGGCAGCGACACTTGTCACACCGCTGTGTCCCAACTTTAGTTCTGATCTATNTCCAATCCTCGCATACAGTCGTATGGCACACGCGCAAAGCTGATACAAAACNNNCGC-ANAGCAATAAAGTANANGCACACTTAAAAGCCGGCTCACAGCAGAGTACANCGGGTTNGGTGNAAATGCAGNTGT-GAGNGCGATGTGTGCAAGATGTNGTTTGCA] [+] EMBL CF541643 [TCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGATGACTACGGCACGAACATAACGAGCGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGTCACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTCGACCAATGGAACGGTTATAACCATTGGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATATGATGCTGGCGGACACTGGTAGCGCGACCATAAATGCCAACGAAACGTACACTCCGCTACTATCCGCTATTAGACTTTTTAAGAACTTTTTCTCTTCCCTCCTCAGTAAACAAGGCTCACTAACTTAGCGTTCGGTGACGTTAGCTGTGACCAAGAAACTAAAAATGTACTCCATAAGTTTTGTTCGTGAAGTTAAATGCAATTCACACAGCGCACCTTTTAGCAACTAGTACTAACTGTTAGCATACATTATAATTCAAAGAAAACTAAAAAAATGCGGCAGCGACACTTGTCACACCGCTGTGTCCCAACTTTAGTTCTGATCTATNTCCAATCCTCGCATACAGTCGTATGGCACACGCGCAAAGCTGATACAAAACNNNCGC ANAGCAATAAAGTANANGCACACTTAAAAGCCGGCTCACAGCAGAGTACANCGGGTTNGGTGNAAATGCAGNTGT GAGNGCGATGTGTGCAAGATGTNG ] [+] EMBL BX626167 [ TTATAACCATTGGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATATGATGCTGGCGGACACTGGTAGCGCGACCATAAATGCCAACGAAACGTACACTCCGCTACTATCCGCTATTAGACTTTTTAAGAACTTTTTCTCTTCCCTCTTCAGTAAACAAGGCTCACAAACTTAGCGTTCGGTGACGTTAGCTGTGACCAAGAAACTAAAAATGTACTCCGTAAGTTTTGTTCGTGAAGTTAAATGCAATTCACACAGCGCACCTTTTAGCAACTAGTACTAACTGTTAGCATACATTATAATTCAAAGAAAACGAAAAAAATGCGGCAGCGACACTTGCCACACCGCTGTGTTCCAACTTTAGTTCTGATCTATTTCCAATCCTCGCATACGGTCGTACGGCACACGCGCAAAGCTGATACAAAACAAGCGCAACAGCAATAAAGTAGAAGTACGCTTAAAAGCCGGCTCACAGCAGAGTACAAC GGTTTGGTGGAAATGCAG TGTGGAGTGCGATGTGTGCAAGATGTTGTTTGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7848#0 TCTTACTGCCATGCTACAGATGCGGATCATCTCTGTTCCACTACTTTCAGCGGCGGTTTT 60 consensus_7848#1 ------------------------------------------------------------ consensus_7848#0 GTTGCAACCGCTGCTGGCAGCTCCGATATTTTGGTTTCTGCCGTGGAGTTTCCCTGCACT 120 consensus_7848#1 ------------------------------------------------------------ consensus_7848#0 GTCTCCAACCACCACTACTTTGGCGACCACTTCCGGGACGGCGGCATCGAGTGGCGCTTC 180 consensus_7848#1 ------------------------------------------------------------ consensus_7848#0 CAATTCTTCGAACGTGTCGGTCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGA 240 consensus_7848#1 --------------------TCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGA 40 **************************************** consensus_7848#0 TGACTACGGCACGAACATAACGAACGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGT 300 consensus_7848#1 TGACTACGGCACGAACATAACGAGCGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGT 100 *********************** ************************************ consensus_7848#0 CACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTC 360 consensus_7848#1 CACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTC 160 ************************************************************ consensus_7848#0 GACCAATGGAACGGTTATAACCATTGGCGAGCATACGATTCGGCTGCCGCACAACATATC 420 consensus_7848#1 GACCAATGGAACGGTTATAACCATTGGCGAGCATACGATTCGGCTGCCGCACAACATATC 220 ************************************************************ consensus_7848#0 CAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATATGATGCTGGC 480 consensus_7848#1 CAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATATGATGCTGGC 280 ************************************************************ consensus_7848#0 GGACACTGGTAGCGCGACCATAAATGCCAACGAAACGTACACTCCGCTACTATCCGCTAT 540 consensus_7848#1 GGACACTGGTAGCGCGACCATAAATGCCAACGAAACGTACACTCCGCTACTATCCGCTAT 340 ************************************************************ consensus_7848#0 TAGACTTTTNAAGAACTTTTTCTCTTCCCTCTTCAGTAAACAAGGCTCACAAACTTAGCG 600 consensus_7848#1 TAGACTTTTTAAGAACTTTTTCTCTTCCCTCCTCAGTAAACAAGGCTCACTAACTTAGCG 400 ********* ********************* ****************** ********* consensus_7848#0 TTCGGTGACGTTAGCTGTGACCAAGAAACTAAAAATGTACTCCATAAGTTTNGTTCGTGA 660 consensus_7848#1 TTCGGTGACGTTAGCTGTGACCAAGAAACTAAAAATGTACTCCATAAGTTTTGTTCGTGA 460 *************************************************** ******** consensus_7848#0 AGTNAANTGCANTN-ACACAGCGCACCTTT-AGCANCTAGTACTANCNGT-AGCNN-CAN 716 consensus_7848#1 AGTTAAATGCAATTCACACAGCGCACCTTTTAGCAACTAGTACTAACTGTTAGCATACAT 520 *** ** **** * *************** **** ********* * ** *** ** consensus_7848#0 TANAATC---AANAAACTAAANAAT--CGGCANCNACNCTG--CNNACCGCTGGNTCCA- 768 consensus_7848#1 TATAATTCAAAGAAAACTAAAAAAATGCGGCAGCGACACTTGTCACACCGCTGTGTCCCA 580 ** *** * ******** ** ***** * ** ** * ******* *** consensus_7848#0 --CTTAGTTCTANTNNTTCATT-------------------------------------- 788 consensus_7848#1 ACTTTAGTTCTGATCTATNTCCAATCCTCGCATACAGTCGTATGGCACACGCGCAAAGCT 640 ******** * * consensus_7848#0 ------------------------------------------------------------ consensus_7848#1 GATACAAAACNNNCGCANAGCAATAAAGTANANGCACACTTAAAAGCCGGCTCACAGCAG 700 consensus_7848#0 ------------------------------------------------------------ consensus_7848#1 AGTACANCGGGTTNGGTGNAAATGCAGNTGTGAGNGCGATGTGTGCAAGATGTNGTTTGC 760 consensus_7848#0 - consensus_7848#1 A 761 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||