These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7904#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1202 fasta sequence [CCGCGGACGCGTGGGGTGAGTGTGCTGTTCGGTAGTGTTCACCATTCACCGTTTGCACGTCATCGCGCTCGGTCGGTTGTTGGGTAACTTTCACTCCGTGCCACACAGTAGAGGACCTCGATCGTGGTGGGGTGGTGTGTTGTTTTGTGCGTGATTTTGTAACCTGTGTGCGTCGGCTACATCATGTAATAATGATATACAGTTTCTGTCGCTTGCAAAGCTCCATTCCATTCTGTAAACTGTGATACATTTTAGCAAGTTTAGCTCACTACTTACTTGACACAAAACTGCGCAACGGCATGAGCAGCTTAGACTTGGAATGATTCGTGTTTGTGCGTGCTTGTTTGTGTTTGATTACGTACGCAGCTTCTAAGACAACCGGCTTGTTATCAGTTTGTGAA-GGAAAAAAACACACACGATTAAA-GAATTAAA-ATTCTACAGCAGCAACAATGTTCACCGGCAGCGGAATGTGGTGTCTACGATTCGTTTCCTGCCTTCTAGTGACCTTCACAGTATTGCCAATGCAACAGACCACGGCCCAGCTTACGCTCGAGCAGATGCGAATAGTGTCGACCCGTACGAACGAATCGCACTTCGACAGCATGCTCAAAAGCATCCTCAAGCCACGAATCGTTGGCACCGCCACACACAGCGAGGTCAAGCGGAGCATCATCAAGG-AGCTGAAAACGCTCGGTTTCACCGTCGAGCT-GGACGAGTTCAACCAGAAGGCACCGCACTTTGGCATGCTCAAGTTTACCAACATCGTGGCCAAGCTAAATCCGGCGGCCGACAAATACCTTGCCCTGGCCTGTCACTACGATAGCAAATACTTCCGCGAGCACGCGTTCGTCGGTGCGGTCGATTCGGCCGTTCCCTGTGCGATGATGCTGAATCTGGCCAAAACGACCGAATCCGCGCTGAAGCTGTTGCGCAACAATACGGACCTCAGCCTGATGCTGCTGTTCTTCGATGGTTAGGAAGCGTTCCGGAAGTGGTCCGCTACGGATTCACTGTACGGCTCGAAGCATTTGGCGACCAAGTGGACCACGGCACCGTACGTGTCGAAAGCGCTGGGAAAATCGATGCGCGAAATTGATCGCGTTCAGCTGCTCGTCCTGCTCGATCTGATCGGCAGTGAGGATCCCAAGTTCTACAACTTCTTCCCCAACACACGTAACTACCACCGGCGGTTGAGCAAAATC] [+] EMBL BM631280 [CCGCGGACGCGTGGGGTGAGTGTGCTGTTCGGTAGTGTTCACCATTCACCGTTTGCACGTCATCGCGCTCGGTCGGTTGTTGGGTAACTTTCACTCCGTGCCACACAGTAGAGCACCTCGATCGTGGTGGGGTGGTGTGTTGTTTTGTGCGTGATTTTGTAACCTGTGTGCGTCGGCTACGTCATGTAATAATGATATACAGTTTCTGTCGCTTGCAAAGCTCCATTCCATTCTGTAAACTGTGATACATTTTAGCAAGTTTAGCTCGCTACTTACTTGACACAAAACTGCGCAACGGCATGAGCAGCTTAGACTTGGAGTGATTCGTGTTTGTGCGTGCTTGTTTGTGTTTGATTACGTACGCAGCTTCTAAGACAACCGGCTTGTTATCAGTTTGTGAA GGAAAAAAACACACACGATTAAA GAATTAAA CTTCTACAGCAGCAACAATGTTCAGCAGCAGCGGAATGTGGTGTCTACGATTCGTTTCCTGCCTTCTAGTGACCTTCACAGTATTGCCAATGCAACAGACCACGGCCCAGCTTACGCTCGAGCAGATGCGAATAGTGTCGACCCGTACGAACGAATCGCACTTCGACAGCATGCTCAAAA ] [+] EMBL BM649108 [ ccgACGTCATCGCGCTCGGTCGGTTGTTGGGTAACTTTCACTCCGTGCCACACAGTAGAGGACCTCGATCGTGGTGGGGTGGTGTGTTGTTTTGTGCGTGATTTTGTAACCTGTGTGCGTCGGCTACATCATGTAATAATGATATACAGTTTCTGTCGCTTGCAAAGCTCCATTCCATTCTGTAAACTGTGATACATTTTGGCAAGTTTAGCTCACTACTTACTTGACACAAAACTGCGCAACGGCATGAGCAGCTTAGACTTGGAATGATTCGTGTTTGTGCGTGCTTGTTTGTGTTTGATTACGTACGCAGCTTCTAAGACAACCGGCTTGTTATCAGTTTGTGAA GGAAAAAAACACACACGATTAAA GAATTAAA ATTCTACAGCAGCAACAATGTTCACCGGCAGCGGAATGTGGTGTCTACGATTCGTTTCCTGCCTTCTAGTGACCTTCACAGTATTGCCAATGCAACAGACCACGGCCCAGCTTACGCTCGAGCAGATGCGAATAGTGTCGACCCGTACGAACGAATCGCACTTCGACAGCATGCTCAAAAGCATCCTCAAGCCACGAATCGTTGGCACCGCCACACACAGCGAGGTCAAGCGGAGCATCATCAAGGCAGCTGAAAACGCTCGGTTTCACCGTCGAGCTGGGACGAGTTCAACCAGAAGGCACCGCACTTTGGC ] [+] EMBL BM643340 [ ccgGTCATCGCGCTCGGTCGGTTGTTGGGTAACTTTCACTCCGTGCCACACAGTAGAGGACCTCGATCGTGGTGGGGTGGTGTGTTGTTTTGTGCGTGATTTTGTAACCTGTGTGCGTCGGCTACATCATGTAATAATGATATACAGTTTCTGTCGCTTGCAAAGCTCCATTCCATTCTGTAAACTGTGATACATTTTAGCAAGTTTAGCTCACTACTTACTTGACACAAAACTGCGCAACGGCATGAGCAGCTTAGACTTGGAATGATTCGTGTTTGTGCGTGCTTGTTTGTGTTTGATTACGTACGCAGCTTCTAAGACAACCGGCTTGTTATCAGTTTGTGAA GGAAAAAAACACACACGATTAAA GAATTAAA ATTCTACAGCAGCAACAATGTTCACCGGCAGCGGAATGTGGTGTCTACGATTCGTTTCCTGCCTTCTAGTGACCTTCACAGTATTGCCAATGCAACAGACCACGGCCCAGCTTACGCTCGAGCAGATGCGAATAGTGTCGACCCGTACGAACGAATCGCACTTCGACAGCATGCTCAAAAGCATCCTCAAGCCACGAATCGTTGGCACCGCCACACACAGCGAGGTCAAGCGGAGCATCATCAAGG AGCTGAAAACGCTCGGTTTCACCGTCGAGCT GGACGAGTTCAACCAGAAGGCACCGCACTTTGG ] [+] EMBL BM620392 [ ccGGGTAACTTTCACTCCGTGCCACACAGTAGAGGACCTCGATCGTGGTGGGGTGGTGTGTTGTTTTGTGCGTGATTTTGTAACCTGTGTGCGTCGGCTACATCATGTAATAATGATATACAGTTTCTGTCGCTTGCAAAGCTCCATTCCATTCTGTAAACTGTGATACATTTTAGCAAGTTTAGCTCACTACTTACTTGACACAAAACTGCGCAACGGCATGAGCAGCTTAGACTTGGAATGATTCGTGTTTGTGCGTGCTTGTTTGTGTTTGATTACGTACGCAGCTTCTAAGACAACCGGCTTGTTATCAGTTTGTGAA GGAAAAAAACACACACGATTAAA GAATTAAA ATTCTACAGCAGCAACAATGTTCACCGGCAGCGGAATGTGGTGTCTACGATTCGTTTCCTGCCTTCTAGTGACCTTCACAGTATTGCCAATGCAACAGACCACGGCCCAGCTTACGCTCGAGCAGATGCGAATAGTGTCGACCCGTACGAACGAATCGCACTTCGACAGCATGCTCAAAAGCATCCTCAAGCCACGAATCGTTGGCACCGCCACACACAGCGAGG ] [+] EMBL BM621741 [ ccgGTGTTGTTTTGTGCGTGATTTTGTAACCTGTGTGCGTCGGCTACGTCATGTAATAATGATATACAGTTTCTGTCGCTTGCAAAGCTCCATTCCATTCTGTAAACTGTGATACATTTTAGCAAGTTTAGCTCGCTACTTACTTGACACAAAACTGCGCAACGGCATGAGCAGCTTAGACTTGGAGTGATTCGTGTTTGTGCGTGCTTGTTTGTGTTTGATTACGTACGCAGCTTCTAAGACAACCGGCTTGTTATCAGTTTGTGAA GGAAAAAAACACACACGATTAAA GAATTAAA CTTCTACAGCAGCAACAATGTTCAGCAGCAGCGGAATGTGGTGTCTACGATTCGTTTCCTGCCTTCTAGTGACCTTCACAGTATTGCCAATGCAACAGACCACGGCCCAGCTTACGCTCGAGCAGATGCGAATAGTGTCGACCCGTACGAACGAATCGCACTTCGACAGCATGCTCAAAAGCATCCTCAAGCCACGAATCGTTGGCACCGC ] [+] EMBL AL692717 [ cccgagGTNTTNTTTTGTGCGTGATTTTGTAACCTGTGTGCGTCGGCTACATCATGTAATAATGATATACAGTTTCTGTCGCTTGCAAAGCTCCATTCCATTCTGTAAACTGTGATACATTTTAGCAAGTTTAGCTCACTACTTACTTGACACAAAACTGCGCAACGGCATGAGCAGCTTAGACTTGGAATGATTCGTGTTTGTGCGTGCTTGTTTGTGTTTGATTACGTACGCAGCTTCTAAGACAACCGGCTTGTTATCAGTTTGTGAACGGAAAAAAACACACACGATTAAACGAATTAAACATTCTACAGCAGCAACAATGTTCACCGGCAGCGGAATGTGGTGTCTACGATTCGTTTCCTGCCTTCTAGTGACCT ] [+] EMBL BX616277 [ CGAGCAGATGCGAATAGTGTCGACCCGTACGAACGAATCGCACTTCGACAGCATGCTCAAAAGCATCCTCAAGCCACGAATCGTTGGCACCGCCACACACAGCGAGGTCAAGCGGAGCATCATCAAGG AGCTGAAAACGCTCGGTTTCACCGTCGAGCT GGACGAGTTCAACCAGAAGGCACCGCACTTTGGCATGCTCAAGTTTACCAACATCGTGGCCAAGCTAAATCCGGCGGCCGACAAATACCTTGCCCTGGCCTGTCACTACGATAGCAAATACTTCCGCGAGCACGCGTTCGTCGGTGCGGTCGATTCGGCCGTTCCCTGTGCGATGATGCTGAATCTGGCCAAAACGACCGAATCCGCGCTGAAGCTGTTGCGCAACAATACGGACCTCAGCCTGATGCTGCTGTTCTTCGATGGTTAGGAAGCGTTCCGGAAGTGGTCCGCTACGGATTCACTGTACGGCTCGAAGCATTTGGCGACCAAGTGGACCACGGCACCGTACGTGTCGAAAGCGCTGGGAAAATCGATGCGCGAAATTGATCGCGTTCAGCTGCTCGTCCTGCTCGATCTGATCGGCAGTGAGGATCCCAAGTTCTACAACTTCTTCCCCAACACACGTAACTACCACCGGCGGTTGAGCAAAATC] consensusID : consensus_7904#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [ATCCCCCGAGGTTNGAGGTCAGCGGAGCATCATCAGAGCTGAAAACGCTCGGTTTCACCGTCGAGCTGGACGAGTTCAACCAGAAGGCACCGCACTTTGGCATGCTCAAGTTTACCAACATCGTGGCCAAGCTAAATCCGGCGGCCGACAAATACCTTGGCCCTGGCCTGTCACTACGATAGCAAATACTTCCGCGAGCACGCGTTCGTCGGTGCGGTCGATTCGGCCGTTCCCTGTGCGATGATGCTGAATCTGGCCAAAACGACCGAATCCGCGCTGAAGCTGTTGCGCAACAATACGGACCTCAGCCTGATGCTGCTGTTCTTCGATGGTGAGGAAGCGTTCCGGAAGTGGTCCGCTACGGATTCACTGTACGGCTCGAAGCATTTGGCGACCAAGTGGACCACGGCACCGTACGTGTCGAAAGCGCTGGGAAAATCGATGCGCGAAATTGATCGCGTCAGCTGCTCGTCCTGGTCGATCTGATCGGAGTGAGGATTCCAAGTTCTAAAAA] [+] EMBL AL932038 [ATCCCCCGAGGTTNGAGGTCAGCGGAGCATCATCAGAGCTGAAAACGCTCGGTTTCACCGTCGAGCTGGACGAGTTCAACCAGAAGGCACCGCACTTTGGCATGCTCAAGTTTACCAACATCGTGGCCAAGCTAAATCCGGCGGCCGACAAATACCTTGGCCCTGGCCTGTCACTACGATAGCAAATACTTCCGCGAGCACGCGTTCGTCGGTGCGGTCGATTCGGCCGTTCCCTGTGCGATGATGCTGAATCTGGCCAAAACGACCGAATCCGCGCTGAAGCTGTTGCGCAACAATACGGACCTCAGCCTGATGCTGCTGTTCTTCGATGGTGAGGAAGCGTTCCGGAAGTGGTCCGCTACGGATTCACTGTACGGCTCGAAGCATTTGGCGACCAAGTGGACCACGGCACCGTACGTGTCGAAAGCGCTGGGAAAATCGATGCGCGAAATTGATCGCGTCAGCTGCTCGTCCTGGTCGATCTGATCGGAGTGAGGATTCCAAGTTCTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7904#0 CCGCGGACGCGTGGGGTGAGTGTGCTGTTCGGTAGTGTTCACCATTCACCGTTTGCACGT 60 consensus_7904#1 ------------------------------------------------------------ consensus_7904#0 CATCGCGCTCGGTCGGTTGTTGGGTAACTTTCACTCCGTGCCACACAGTAGAGGACCTCG 120 consensus_7904#1 ------------------------------------------------------------ consensus_7904#0 ATCGTGGTGGGGTGGTGTGTTGTTTTGTGCGTGATTTTGTAACCTGTGTGCGTCGGCTAC 180 consensus_7904#1 ------------------------------------------------------------ consensus_7904#0 ATCATGTAATAATGATATACAGTTTCTGTCGCTTGCAAAGCTCCATTCCATTCTGTAAAC 240 consensus_7904#1 ------------------------------------------------------------ consensus_7904#0 TGTGATACATTTTAGCAAGTTTAGCTCACTACTTACTTGACACAAAACTGCGCAACGGCA 300 consensus_7904#1 ------------------------------------------------------------ consensus_7904#0 TGAGCAGCTTAGACTTGGAATGATTCGTGTTTGTGCGTGCTTGTTTGTGTTTGATTACGT 360 consensus_7904#1 ------------------------------------------------------------ consensus_7904#0 ACGCAGCTTCTAAGACAACCGGCTTGTTATCAGTTTGTGAAGGAAAAAAACACACACGAT 420 consensus_7904#1 ------------------------------------------------------------ consensus_7904#0 TAAAGAATTAAAATTCTACAGCAGCAACAATGTTCACCGGCAGCGGAATGTGGTGTCTAC 480 consensus_7904#1 ------------------------------------------------------------ consensus_7904#0 GATTCGTTTCCTGCCTTCTAGTGACCTTCACAGTATTGCCAATGCAACAGACCACGGCCC 540 consensus_7904#1 ------------------------------------------------------------ consensus_7904#0 AGCTTACGCTCGAGCAGATGCGAATAGTGTCGACCCGTACGAACGAATCGCACTTCGACA 600 consensus_7904#1 ------------------------------------------------------------ consensus_7904#0 GCATGCTCAAAAGCATCCTCAAGCCACGAATCGTTGGCACCGCCACACACAGCGAGGTCA 660 consensus_7904#1 --------------------------------------ATC-CCCCGAGGTTNGAGGTCA 21 * * ** * ******* consensus_7904#0 AGCGGAGCATCATCAAGGAGCTGAAAACGCTCGGTTTCACCGTCGAGCTGGACGAGTTCA 720 consensus_7904#1 -GCGGAGCATCATCA--GAGCTGAAAACGCTCGGTTTCACCGTCGAGCTGGACGAGTTCA 78 ************** ******************************************* consensus_7904#0 ACCAGAAGGCACCGCACTTTGGCATGCTCAAGTTTACCAACATCGTGGCCAAGCTAAATC 780 consensus_7904#1 ACCAGAAGGCACCGCACTTTGGCATGCTCAAGTTTACCAACATCGTGGCCAAGCTAAATC 138 ************************************************************ consensus_7904#0 CGGCGGCCGACAAATACCTTG-CCCTGGCCTGTCACTACGATAGCAAATACTTCCGCGAG 839 consensus_7904#1 CGGCGGCCGACAAATACCTTGGCCCTGGCCTGTCACTACGATAGCAAATACTTCCGCGAG 198 ********************* ************************************** consensus_7904#0 CACGCGTTCGTCGGTGCGGTCGATTCGGCCGTTCCCTGTGCGATGATGCTGAATCTGGCC 899 consensus_7904#1 CACGCGTTCGTCGGTGCGGTCGATTCGGCCGTTCCCTGTGCGATGATGCTGAATCTGGCC 258 ************************************************************ consensus_7904#0 AAAACGACCGAATCCGCGCTGAAGCTGTTGCGCAACAATACGGACCTCAGCCTGATGCTG 959 consensus_7904#1 AAAACGACCGAATCCGCGCTGAAGCTGTTGCGCAACAATACGGACCTCAGCCTGATGCTG 318 ************************************************************ consensus_7904#0 CTGTTCTTCGATGGTTAGGAAGCGTTCCGGAAGTGGTCCGCTACGGATTCACTGTACGGC 1019 consensus_7904#1 CTGTTCTTCGATGGTGAGGAAGCGTTCCGGAAGTGGTCCGCTACGGATTCACTGTACGGC 378 *************** ******************************************** consensus_7904#0 TCGAAGCATTTGGCGACCAAGTGGACCACGGCACCGTACGTGTCGAAAGCGCTGGGAAAA 1079 consensus_7904#1 TCGAAGCATTTGGCGACCAAGTGGACCACGGCACCGTACGTGTCGAAAGCGCTGGGAAAA 438 ************************************************************ consensus_7904#0 TCGATGCGCGAAATTGATCGCGTTCAGCTGCTCGTCCTGCTCGATCTGATCGGCAGTGAG 1139 consensus_7904#1 TCGATGCGCGAAATTGATCGCGT-CAGCTGCTCGTCCTGGTCGATCTGATCGG-AGTGAG 496 *********************** *************** ************* ****** consensus_7904#0 GATCCCAAGTTCTACAACTTCTTCCCCAACACACGTAACTACCACCGGCGGTTGAGCAAA 1199 consensus_7904#1 GATTCCAAGTTCTAAAAA------------------------------------------ 514 *** ********** ** consensus_7904#0 ATC 1202 consensus_7904#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||