These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7907#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 698 fasta sequence [CCGCTCGGATAAATCGGCTTGTGGTTTTGGTAAAAATTACGTAAAATAAAAACACACAAATCCTGCTTGATCTTTCCTGCGAGTGTTTTTGGGGGAGTAAGTAAGCTAACCCACTGTTGTTGGGGCGTCCGACTGTTGGAAGCGTAATCGAATATGTTCAGGTTTGCGGTAAAAGTTGGCCTCGCTGGCGGTGCCGTGTACTACAGCAAGCAGGAAGGCATCTGGGAGGAAGACACCGAAAAGGTGTACGAGCGGTATGCTACTGCAATGAAGCCACACATCGAGAGCGTAAAGCAACAAATTCCATTGGATATACCGGCCCTCCCTTCGAGCGGAGAGTTATGCTTTGTGACGAAACATTATTACAATGAGGGTGTGAAAAATACGATTCATTTCATCCATCGGCTTCCTTGCTATGCTGGCCAGTGGGCAAAGAAGGGTTCGGATGCAATTAAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTGGTAACATGAAATAAAACGCGGGTCTGTGAAATAGGAAGGACGAGTTGTGTTTATTATTTCTGCCTCGGCCGTAGACAATTTTCGGACTGTGGTACAATTATACTTCAACAGTAAGCGACAACGTATATGCTCGTATGACAACGGATC] [+] EMBL BM625647 [CCGCTCGGATAAATCGGCTTGTGGTTTTGGTAAAAATTACGTAAAATAAAAACACACAAATCCTGCTTGATCTTTCCTGCGAGTGTTTTTGGGGGAGTAAGTAAGCTAACCCACTGTTGTTGGGGCGTCCGACTGTTGGAAGCGTAATCGAATATGTTCAGGTTTGCGGTAAAAGTTGGCCTCGCTGGCGGTGCCGTGTACTACAGCAAGCAGGAAGGCATCTGGGAGGAAGACACCGAAAAGGTGTACGAGCGGTATGCTACTGCAATGAAGCCACACATCGAGAGCGTAAAGCAACAAATTCCATTGGATATACCGGCCCTCCCTTCGAGCGGAGAGTTATGCTTTGTGACGAAACATTATTACAATGAGGGTGTGAAAAATACGATTCATTTCATCCATCGGCTTCCTTGCTATGCTGGCCAGTGGGCAAAGAAGGGTTCGGATGCAATTAAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTG ] [+] EMBL BM590527 [ ccgCCTGCGAGTGTTTTTGGGGGAGTAAGTAAGCTAACCCACTGTTGTTGGGGCGTCCGACTGTTGGAAGCGTAATCGAATATGTTCAGGTTTGCGGTAAAAGTTGGCCTCGCTGGCGGTGCCGTGTACTACAGCAAGCAGGAAGGCATCTGGGAGGAAGACACCGAAAAGGTGTACGAGCGGTATGCTACTGCAATGAAGCCACACATCGAGAGCGTAAAGCAACAAATTCCATTGGATATACCGGCCCTCCCTTCGAGCGGAGAGTTATGCTTTGTGACGAAACATTATTACAATGAGGGTGTGAAAAATACGATTCATTTCATCCATCGGCTTCCTTGCTATGCTGGCCAGTGGGCAAAGAAGGGTTCGGATGCAATTAAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTGG ] [+] EMBL BM608859 [ ccgGTGTTTTTGGGGGAGTAAGTAAGCTAACCCACTGTTGTTGGGGCGTCCGACTGTTGGAAGCGTAATCGAATATGTTCAGGTTTGCGGTAAAAGTTGGCCTCGCTGGCGGTGCCGTGTACTACAGCAAGCAGGAAGGCATCTGGGAGGAAGACACCGAAAAGGTGTACGAGCGGTATGCTACTGCAATGAAGCCACACATCGAGAGCGTAAAGCAACAAATTCCATTGGATATACCGGCCCTCCCTTCGAGCGGAGAGTTATGCTTTGTGACGAAACATTATTACAATGAGGGTGTGAAAAATACGATTCATTTCATCCATCGGCTTCCTTGCTATGCTGGCCAGTGGGCAAAGAAGGGTTCGGATGCAATTAAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTGGTAACATGAAATAAAACGCGGGTCTGTG ] [+] EMBL BM636227 [ ccgGTTTTTGGGGGAGTAAGTAAGCTAACCCACTGTTGTTGGGGCGTCCGACTGTTGGAAGCGTAATCGAATATGTTCAGGTTTGCGGTAAAAGTTGGCCTCGCTGGCGGTGCCGTGTACTACAGCAAGCAGGAAGGCATCTGGGAGGAAGACACCGAAAAGGTGTACGAGCGGTATGCTACTGCAATGAAGCCACACATCGAGAGCGTAAAGCAACAAATTCCATTGGATATACCGGCCCTCCCTTCGAGCGGAGAGTTATGCTTTGTGACGAAACATTATTACAATGAGGGTGTGAAAAATACGATTCATTTCATCCATCGGCTTCCTTGCTATGCTGGCCAGTGGGCAAAGAAGGGTTCGGATGCAATTAAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTGGTAACATGAAATAAAACGCGGGTCTGTGAAATAGG ] [+] EMBL BM607622 [ TTTTTGGGGGAGTAAGTAAGCTAACCCACTGTTGTTGGGGCGTCCGACTGTTGGAAGCGTAATCGAATATGTTCAGGTTTGCGGTAAAAGTTGGCCTCGCTGGCGGTGCCGTGTACTACAGCAAGCAGGAAGGCATCTGGGAGGAAGACACCGAAAAGGTGTACGAGCGGTATGCTACTGCAATGAAGCCACACATCGAGAGCGTAAAGCAACAAATTCCATTGGATATACCGGCCCTCCCTTCGAGCGGAGAGTTATGCTTTGTGACGAAACATTATTACAATGAGGGTGTGAAAAATACGATTCATTTCATCCATCGGCTTCCTTGCTATGCTGGCCAGTGGGCAAAGAAGGGTTCGGATGCAATTAAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTGGT ] [+] EMBL BM624225 [ ccgGGGGGAGTAAGTAAGCTAACCCACTGTTGTTGGGGCGTCCGACTGTTGGAAGCGTAATCGAATATGTTCAGGTTTGCGGTAAAAGTTGGCCTCGCTGGCGGTGCCGTGTACTACAGCAAGCAGGAAGGCATCTGGGAGGAAGACACCGAAAAGGTGTACGAGCGGTATGCTACTGCAATGAAGCCACACATCGAGAGCGTAAAGCAACAAATTCCATTGGATATACCGGCCCTCCCTTCGAGCGGAGAGTTATGCTTTGTGACGAAACATTATTACAATGAGGGTGTGAAAAATACGATTCATTTCATCCATCGGCTTCCTTGCTATGCTGGCCAGTGGGCAAAGAAGGGTTCGGATGCAATTAAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTGGTAACATGAAATAAAACGCGGGTCTGTGAAATAGGAAGGACGAGTTGTGTTTATTATTTCTGCCTCGGCCGTAGACAATTTTCGGACTGTGGTACAATTATACTTCAACAGTAAGCGACAACGTATATGCTCGTATGACAACGGATC] [-] EMBL CNS08V6A [ CATTTCATCCATCGGCTTCCTTGCTATGCTGGCCAGGGGGCAAAGAAGGGTTCGGATGCAATTAAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTGGTAACATGAAATAAAACGCGGGTCTGTGAAATAGa ] consensusID : consensus_7907#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence [GGAATCGTTCGATATGATCGAGATCGGCGACACGAAGGTGATGATACCGCGCAGCCGCGACGGCTCACCGTACGACGATGCGGAGAGCCGCGCGCGGGAGGAGCAGGAGGACAATGAGCGGGTGGCGCGGGAAAACCAGCGCATCATCGAGACGGTCGAGGCGAGCATCAAGAAGGAGGCCGGCGAGACGGGCAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTGGTAACATGAAATAAAACGCGGGTCT] [+] EMBL BX617055 [GGAATCGTTCGATATGATCGAGATCGGCGACACGAAGGTGATGATACCGCGCAGCCGCGACGGCTCACCGTACGACGATGCGGAGAGCCGCGCGCGGGAGGAGCAGGAGGACAATGAGCGGGTGGCGCGGGAAAACCAGCGCATCATCGAGACGGTCGAGGCGAGCATCAAGAAGGAGGCCGGCGAGACGGGCAACAAGCCCTGGACGCTCAACCAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTTTAAACACTAACTGTTGGTAACATGAAATAAAACGCGGGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7907#0 CCGCTCGGATAAATCGGCTTGTGGTTTTGGTAAAAATTACGTAAAATAAAAACACACAAA 60 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 TCCTGCTTGATCTTTCCTGCGAGTGTTTTTGGGGGAGTAAGTAAGCTAACCCACTGTTGT 120 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 TGGGGCGTCCGACTGTTGGAAGCGTAATCGAATATGTTCAGGTTTGCGGTAAAAGTTGGC 180 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 CTCGCTGGCGGTGCCGTGTACTACAGCAAGCAGGAAGGCATCTGGGAGGAAGACACCGAA 240 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 AAGGTGTACGAGCGGTATGCTACTGCAATGAAGCCACACATCGAGAGCGTAAAGCAACAA 300 consensus_7907#1 ----------------GGAATCGTTCGATATGATCG-AGATCGGCGACACGAAGGTGATG 43 * * * ** * * **** * *** consensus_7907#0 ATTCCAT-TGGATATACCGGCCCTCCCTTCGA----GCGGAGAGTTATGCTTTGTGACGA 355 consensus_7907#1 ATACCGCGCAGCCGCGACGGCTCACCGTACGACGATGCGGAGAGCCGCGCGCGGGA--GG 101 ** ** * **** * ** * *** ******** ** * * consensus_7907#0 AACATTATTACAATGAGGGTGTGAAAAATACGATTCATTTCATCCATCGGCTTCCTTGCT 415 consensus_7907#1 AGCAGGAGGACAATGAGCGGGTGGCGCGGGAAAACCAGCGCATC-ATCGAGACGGTCGA- 159 * ** * ******** * *** * ** **** **** * * consensus_7907#0 ATGCTGGCCAGTGGGCAAAGAAGGGTTCGGATGCAATTAAACAAGCCCTGGACGCTCAAC 475 consensus_7907#1 -----GGCGAGCATCAAGAAGGAGGCCGGCGAGACGGGCAACAAGCCCTGGACGCTCAAC 214 *** ** * * ** * * ********************* consensus_7907#0 CAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTT 535 consensus_7907#1 CAGCCCCCCCAAAAGCCGAACCTGCAGCAGCAGTGACAAAGAAGTAGGACACGAATGGTT 274 ************************************************************ consensus_7907#0 TAAACACTAACTGTTGGTAACATGAAATAAAACGCGGGTCTGTGAAATAGGAAGGACGAG 595 consensus_7907#1 TAAACACTAACTGTTGGTAACATGAAATAAAACGCGGGTCT------------------- 315 ***************************************** consensus_7907#0 TTGTGTTTATTATTTCTGCCTCGGCCGTAGACAATTTTCGGACTGTGGTACAATTATACT 655 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 TCAACAGTAAGCGACAACGTATATGCTCGTATGACAACGGATC 698 consensus_7907#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||