These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7912#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1332 fasta sequence [GCGCGTTACATATATATGTATAGATTGCAGGGATCTGCTGTGTCAGGATAGCTTAACCCGGATCCCGCGTGTTTTGCTATTCGACTTAGATACGTAGCTAGGTCTAGTTGTTCGTTTACGCCATCATTTACCATTGTTCCACTCCAAACGTTGTAATTTTCGTTTCCATTTTCCATTTGGTAGGTCATCTGCTCGATTAATTACAGGTCGAATCATATGGTGAGATGGTATAAGAGGTGAGCGTGTGCGTGTTTATGTAGGGTTTTGTGTCGTCTAATGAAGCAGATAGGAGAAAGACACACGTAAAGGAGTAAACACGAATAGTAGGGAATTAGGAAAGTCACCCTGTGCGCACAACAACTACCACACAGAGATTAGATAGGAATATGTTCTGCTATTTTACCTGTCCCTATATAGGTTTTTTTTGTATTGTTTTGTTTGTAGCAGCAGTATTTATTGGACCCCAACGATCAGATGGAATTTAGCAATCCATGCAAGCCATATTAATTAGTAGCGAAAACAAACACTTTCTACTCTTCCTATCGAGCTGTACCTAAACTCCGGTTGCAGTTGCGAAATGGTAGAAATGGTGGTCATTTAAAGAAAAAATCGTGTAGCAAAACAGAGAAAGAGAGATAATTAGAGGGAGTAGAGAGGGACAACACTAACCATCAGCTTGCCTCGTTGACCGAAGCAACTGGTGGGGTTGTGATGCCGCACAGAAACGTAAGTAAAAGGAAATCAATTTTAGGATCGATGTTTGGCTCTAGGGGTCACTATTAGGATGTGTAAGTTTCGCACACACATAAACACACAGATTAAAATAAACACTTTAAAAAAGCGAGTCCTTTCCCCTCCCCCTTAAAATGACAGTGTGGTGGTACA-CAAGCCGTATAGTTGTCGATATTTAGATGCCGTAGGTAAATGTTTTCTGTTAGTTGATCGACAGTCGATAAGCGCATACACAACACAACCCAACAGGGAATGGGTTCTTAACGGTGGTTATACAAACGCTTAAATCTCTCTTTACACACGCTGCGTGGCGTGTG-TGCGCTACACGTTTTTCCCCCCGCTCCGTATCCGCTACCTTTGCATCTGTGAACGACCAGGCTGCTCCATTGCTTTCACCCAATCCACCATTTTTTTTGTTTAGTTTGTTTCGAATGTTTTCTCTCTCTCGCTGTCTCTGTCACTTCCCCAGCGCTACCGTTGAGACCTGAAACAGGGGGTTTAAGCCATGAGAGCCATGCGTGTGTGCGTGTTTCTGTGTATTATGCAATAAAAATGTAGAAGAAAACAAAGATAAATATACAGCACACAAGACGGTGTGTG] [+] EMBL CNS095SZ [GCGCGTTACATATATATGTATAGATTGCAGGGATCTGCTGTGTCAGGATAGCTTAACCCGGATCCCGCGTGTTTTGCTATTCGACTTAGATACGTAGCTAGGTCTAGTTGTTCGTTTACGCCATCATTTACCATTGTTCCACTCCAAACGTTGTAATTTTCGTTTCCATTTTCCATTTGGTAGGTCATCTGCTCGATTAATTACAGGTCGAATCATATGGTGAGATGGTATAAGAGGTGAGCGTGTGCGTGTTTATGTAGGGTTTTGTGTCGTCTAATGAAGCAGATAGGAGAAAGACACACGTAAAGGAGTAAACACGAATAGTAGGGAATTAGGAAAGTCACCCTGTGCGCACAACAACTACCACACAGAGATTAGATAGGAATATGTTCTGCTATTTTACCTGTCCCTATATAGGTTTTTTTTGTATTGTTTTGTTTGTAGCAGCAGTATTTATTGGACCCCAACGATCAGATGGAATTTAGCAATCCATGCAAGCCATATTAATTAGTAGCGAAAACAAACACTTTCTACTCTTCCTATCGAGCTGTACCTAAACTCCGGTTGCAGTTGCGAAATGGTAGAAATGGTGGTCATTTAAAGAAAAAATCGTGTAGCAAAACAGAGAAAGAGAGATAATTAGAGGGAGTAGAGAGGGACAACACTAACCATCAGCTTGCCTCGTTGACCGAAGCAACTGGTGGGGTTGTGATGCCGCACAGAAACGTAAGTAAAAGGAAATCAATTTTAGGATCGATGTTTGGCTCTAGGGGTCACTATTAGGATGTGTAAGTTTCGCACACACATAAACACACAGATTAAAATAAACACTTTAAAAAAGCGAGTCCTTTCCCCTCCCCCTTAAAA ] [+] EMBL CNS099OH [ TATATGTATAGATTGCAGGGATCTGCTGTGTCAGGATAGCTTAACCCGGATCCCG GTGTTTTGCTATTCGACTTAGATACGTAGCTAGGTCTAGTTGTTCGTTTACGCCATCATTTACCATTGTTCCACTCCAAACGTTGTAATTTTCGTTTCCATTTTCCATTTGGTAGGTCATCTGCTCGATTAATTACAGGTCGAATCATATGGTGAGATGGTATAAGAGGTGAGCGTGTGCGTGTTTATGTAGGGTTTTGTGTCGTCTAATGAAGCAGATAGGAGAAAGACACACGTAAAGGAGTAAACACGAATAGTAGGGAATTAGGAAAGTCACCCTGTGCGCACAACAACTACCACACAGAGATTAGATAGGAATATGTTCTGCTATTTTACCTGTCCCTATATAGGTTTTTTTTGTATTGTTTTGTTTGTAGCAGCAGTATTTATTGGACCCCAACGATCAGATGGAATTTAGCAATCCATGCAAGCCATATTAATTAGTAGCGAAAACAAACACTTTCTACTCTTCCTATCGAGCTGTACCTAAACTCCGGTTGCAGTTGCGAAATGGTAGAAATGGTGGTCATTTAAAGAAAAAATCGTGTAGCAAAACAGAGAAAGAGAGATAATTAGAGGGAGTAGAGAGGGACAACACTAACCATCAGCTTGCCTCGTTGACCGAAGCAACTGGTGGGGTTGTGATGCCGCACAGAAACGTAAGTAAAAGGAAATCAATTTTAGGATCGATGTTTGGCTCTAGGGGTCACTATTAGGATGTGTAAGTTTCGCACACACATAAACACACAGATTAAAATAAACACTTTAAAAAAGCGAGTCCTTTCCCCTCCCCCTTAAAATGACAGTGTGGTGGTACA CAAGCCGTATAGTTGTCGATATTTAGATGCCGTAGGTAAATGTTTTCTGTTAGTT ] [+] EMBL CNS09MB8 [ AGGTCTAGTTGTTCGTTTACGCCATCATTTACCATTGTTCCACTCCAAACGTTGTAATTTTCGTTTCCATTTTCCATTTGGTAGGTCATCTGCTCGATTAATTACAGGTCGAATCATATGGTGAGATGGTATAAGAGGTGAGCGTGTGCGTGTTTATGTAGGGTTTTGTGTCGTCTAATGAAGCAGATAGGAGAAAGACACACGTAAAGGAGTAAACACGAATAGTAGGGAATTAGGAAAGTCACCCTGTGCGCACAACAACTACCACACAGAGATTAGATAGGAATATGTTCTGCTATTTTACCTGTCCCTATATAGGTTTTTTTTGTATTGTTTTGTTTGTAGCAGCAGTATTTATTGGACCCCAACGATCAGATGGAATTTAGCAATCCATGCAAGCCATATTAATTAGTAGCGAAAACAAACACTTTCTACTCTTCCTATCGAGCTGTACCTAAACTCCGGTTGCAGTTGCGAAATGGTAGAAATGGTGGTCATTTAAAGAAAAAATCGTGTAGCAAAACAGAGAAAGAGAGATAATTAGAGGGAGTAGAGAGGGACAACACTAACCATCAGCTTGCCTCGTTGACCGAAGCAACTGGTGGGGTTGTGATGCCGCACAGAAACGTAAGTAAAAGGAAATCAATTTTAGGATCGATGTTTGGCTCTAGGGGTCACTATTAGGATGTGTAAGTTTCGCACACACATAAACACACAGATTAAAATAAACACTTTAAAAAAGCGAGTCCTTTCCCCTCCCCCTTAAAATGACAGTGTGGTGGTACA CAAGCCGTATAGTTGTCGATATTTAGATGCCGTAGTAAAATGTTTTCTGTTAGTTGATCGACAGTCGATAAGCGCATACACAACACAACCCAACAGGGAATGGGTTCTTAACGGTGGTTATACAAACGCTTAAATCTCTCTTCACACACGCTGCGTGGCGTGTGCTGCGCTACACGTTTTccg ] [-] EMBL CNS09MB9 [ GGAAAGTCACCCTGTGCGCACAACAACTACCACACAGAGATTAGATAGGAATATGTTCTGCTATTTTACCTGTCCCTATATAGGTTTTTTTTGTATTGTTTTGTTTGTAGCAGCAGTATTTATTGGACCCCAACGATCAGATGGAATTTAGCAATCCATGCAAGCCATATTAATTAGTAGCGAAAACAAACACTTTCTACTCTTCCTATCGAGCTGTACCTAAACTCCGGTTGCAGTTGCGAAATGGTAGAAATGGTGGTCATTTAAAGAAAAAATCGTGTAGCAAAACAGAGAAAGAGAGATAATTAGAGGGAGTAGAGAGGGACAACACTAACCATCAGCTTGCCTCGTTGACCGAAGCAACTGGTGGGGTTGTGATGCCGCACAGAAACGTAAGTAAAAGGAAATCAATTTTAGGATCGATGTTTGGCTCTAGGGGTCACTATTAGGATGTGTAAGTTTCGCACACACATAAACACACAGATTAAAATAAACACTTTAAAAAAGCGAGTCCTTTCCCCTCCCCCTTAAAATGACAGTGTGGTGGTACACCAAGCCGTATAGTTGTCGATATTTAGATGCCGTAGGTAAATGTTTTCTGTTAGTTGATCGACAGTCGATAAGCGCATACACAACACAACCCAACAGGGAATGGGTTCTTAACGGTGGTTATACAAACGCTTAAATCTCTCTTAACACACGCTGCGTGGCGTGTG TGCGCTACACGTTTTTCCCCCCGCTCCGTATCCGCTACCTTTGCATCTGTGAACGACCAGGCTGCTCCATTGCTTTCACCCAATCCACCATTTTTTTTGTTTAGTTTGTTTCGAATGTTTTCTCTCTCTCGCTGTCTCTGTCACTTCCCCAGCGCTACCGTTGAGACCTGAAACAGGGGGTTTAA ] [+] EMBL BX628938 [ AGCAGTATTTATTGGACCCCAACGATGAGATGGAATTTAGCAATCCATGCAAGCCATATTAATTAGTAGCGAAAACAAACACTTTCTACTCTCCCTATCGAGCTGTACCTAAACTCCGGTTGCAGTTGCGAAATAGTGGAAATGGTGGTCATTTAAAGAAAAATTCGTGTAGCAAAACAGAGAGAGAGAGATAATTAGAGGGAGTANAGAGGGACAACACTAACCATCAGCTTGCCTCGTTGACCGAAGCAACTGGTGGGGTTGTGA ] [-] EMBL CNS099OI [ CCCCAACGATCAGATGGAATTTAGCAATCCATGCAAGCCATATTAATTAGTAGCGAAAACAAACACTTTCTACTCTTCCTATCGAGCTGTACCTAAACTCCGGTTGCAGTTGCGAAATGGTAGAAATGGTGGTCATTTAAAGAAAAAATCGTGTAGCAAAACAGAGAAAGAGAGATAATTAGAGGGAGTAGAGAGGGACAACACTAACCATCAGCTTGCCTCGTTGACCGAAGCAACTGGTGGGGTTGTGATGCCGCACAGAAACGTAAGTAAAAGGAAATCAATTTTAGGATCGATGTTTGGCTCTAGGGGTCACTATTAGGATGTGTAAGTTTCGCACACACATAAACACACAGATTAAAATAAACACTTTAAAAAAGCGAGTCCTTTCCCCTCCCCCTTAAAATGACAGTGTGGTGGTACACCAAGCCGTATAGTTGTCGATATTTAGATGCCGTAGGTAAATGTTTTCTGTTAGTTGATCGACAGTCGATAAGCGCATACACAACACAACCCAACAGGGAATGGGTTCTTAACGGTGGTTATACAAACGCTTAAATCTCTCTTTACACACGCTGCGTGGCGTGTG TGCGCTACACG TTTTCCCTCCGCTCCGTATCCGCTACCTTTGCATCTGTGAACGACCAGGCTGCTCCATTGCTTTAACCCAATCCACCATTTTTTTTGTTTAGTTTGTTTCGAATGTTTTCTCTCTCTCGCTGTCTCTGTCACTTCCCCAGCGCTACCGTTGAGACCTGAAACAGGGGGTTTAAGCCATGAGAGCCATGCGTGTGTGCGTGTTTCTGTGTATTATGCAATAAAAATGTAGAAGAAAACAAAGATAAATATACAGCACACAAGAC ] [-] EMBL CNS095T0 [ ACGGTGGTTATACAAACGCTTAAATCTCTCTTTACACACGCTGCGTGGCGTGTG TGCGCTACACGTTTTTCCCCCCGCTCCGTATCCGCTACCTTTGCATCTGTGAACGACCAGGCTGCTCCATTGCTTTCACCCAATCCACCATTTTTTTTGTTTAGTTTGTTTCGAATGTTTTCTATATCTCGCTGTCTCTGTCACTTCCCCAGCGCTACCGTTGAGACCTGAAACAGGGGGTTTAAGCCATGAGAGCCATGCGTGTGTGCGTGTTTCTGTGTATTATGCAATAAAAATGTAGAAGAAAACAAAGATAAATATACAGCACACAAGACGGTGTGTG] consensusID : consensus_7912#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 230 fasta sequence [CCGCGGACGCGTGGGAATCCACCTTTTTTTGTTTAGTTTGTTTCGAATGTTTTCTCTCTCTCTCGCTGTCTCTGTCACTTCCCCAGCGCTACCGTTGAGACCTGAAACAGGGGGTTTAAGTCACGAGAGCCATGCGTGTGTGCGTGTTTCTGTGTATTATGCAATAAAACTGTAGATGAAAACAAAGATAAATATACAGCACACAAGACGGTGTGTGGGGTTTGTGTCGC] [+] EMBL BM632838 [CCGCGGACGCGTGGGAATCCACCTTTTTTTGTTTAGTTTGTTTCGAATGTTTTCTCTCTCTCTCGCTGTCTCTGTCACTTCCCCAGCGCTACCGTTGAGACCTGAAACAGGGGGTTTAAGTCACGAGAGCCATGCGTGTGTGCGTGTTTCTGTGTATTATGCAATAAAACTGTAGATGAAAACAAAGATAAATATACAGCACACAAGACGGTGTGTGGGGTTTGTGTCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7912#0 GCGCGTTACATATATATGTATAGATTGCAGGGATCTGCTGTGTCAGGATAGCTTAACCCG 60 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 GATCCCGCGTGTTTTGCTATTCGACTTAGATACGTAGCTAGGTCTAGTTGTTCGTTTACG 120 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 CCATCATTTACCATTGTTCCACTCCAAACGTTGTAATTTTCGTTTCCATTTTCCATTTGG 180 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 TAGGTCATCTGCTCGATTAATTACAGGTCGAATCATATGGTGAGATGGTATAAGAGGTGA 240 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 GCGTGTGCGTGTTTATGTAGGGTTTTGTGTCGTCTAATGAAGCAGATAGGAGAAAGACAC 300 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 ACGTAAAGGAGTAAACACGAATAGTAGGGAATTAGGAAAGTCACCCTGTGCGCACAACAA 360 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 CTACCACACAGAGATTAGATAGGAATATGTTCTGCTATTTTACCTGTCCCTATATAGGTT 420 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 TTTTTTGTATTGTTTTGTTTGTAGCAGCAGTATTTATTGGACCCCAACGATCAGATGGAA 480 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 TTTAGCAATCCATGCAAGCCATATTAATTAGTAGCGAAAACAAACACTTTCTACTCTTCC 540 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 TATCGAGCTGTACCTAAACTCCGGTTGCAGTTGCGAAATGGTAGAAATGGTGGTCATTTA 600 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 AAGAAAAAATCGTGTAGCAAAACAGAGAAAGAGAGATAATTAGAGGGAGTAGAGAGGGAC 660 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 AACACTAACCATCAGCTTGCCTCGTTGACCGAAGCAACTGGTGGGGTTGTGATGCCGCAC 720 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 AGAAACGTAAGTAAAAGGAAATCAATTTTAGGATCGATGTTTGGCTCTAGGGGTCACTAT 780 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 TAGGATGTGTAAGTTTCGCACACACATAAACACACAGATTAAAATAAACACTTTAAAAAA 840 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 GCGAGTCCTTTCCCCTCCCCCTTAAAATGACAGTGTGGTGGTACACAAGCCGTATAGTTG 900 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 TCGATATTTAGATGCCGTAGGTAAATGTTTTCTGTTAGTTGATCGACAGTCGATAAGCGC 960 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 ATACACAACACAACCCAACAGGGAATGGGTTCTTAACGGTGGTTATACAAACGCTTAAAT 1020 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 CTCTCTTTACACACGCTGCGTGGCGTGTGTGCGCTACACGTTTTTCCCCCCGCTCCGTAT 1080 consensus_7912#1 ------------------------------------------------------------ consensus_7912#0 CCGCTACCTTTGCATCTGTGAACGACCAGGCTGCTCCATTGCTTTCACCCAATCCACCAT 1140 consensus_7912#1 -----------------------------------CCGCGGACGCGTGGGAATCCACC-- 23 ** * ******** consensus_7912#0 TTTTTTTGTTTAGTTTGTTTCGAATGTTTTCTCTCTCTC--GCTGTCTCTGTCACTTCCC 1198 consensus_7912#1 TTTTTTTGTTTAGTTTGTTTCGAATGTTTTCTCTCTCTCTCGCTGTCTCTGTCACTTCCC 83 *************************************** ******************* consensus_7912#0 CAGCGCTACCGTTGAGACCTGAAACAGGGGGTTTAAGCCATGAGAGCCATGCGTGTGTGC 1258 consensus_7912#1 CAGCGCTACCGTTGAGACCTGAAACAGGGGGTTTAAGTCACGAGAGCCATGCGTGTGTGC 143 ************************************* ** ******************* consensus_7912#0 GTGTTTCTGTGTATTATGCAATAAAAATGTAGAAGAAAACAAAGATAAATATACAGCACA 1318 consensus_7912#1 GTGTTTCTGTGTATTATGCAATAAAACTGTAGATGAAAACAAAGATAAATATACAGCACA 203 ************************** ****** ************************** consensus_7912#0 CAAGACGGTGTGTG------------- 1332 consensus_7912#1 CAAGACGGTGTGTGGGGTTTGTGTCGC 230 ************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||