|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 946 fasta sequence
[CCGCGGACGCGTGGGATTTGCCAAAAGCGAATCGGTTTTCTGCAGAGAGGAAGCTTGAGTCGAATCGAAGTTTTGTGGTAACATCCCCCCTCCGTTCGGAAGCAATCCGAAGAAACCGTTCTTCAAATGGCCGACAGCAAGAACGATGATTTGGCAACTGCCATCCTGAAGCGCAAGGATCGCCCGAACCGCTTGATCGTCGACGAAGCCGCTAACGATGACAACTCGGTTATTTCGTTGTCACAGGCAAAAATGGACGAGCTGGAGCTGTTCCGCGGCGACACGGTACTGTTGAAGGGCAAGCGCCGGAAAGAGACGGTCTGCATCGTCCTGTCGGACGAGAACTGCCCGGACGAGAAGATCCGCATGAACCGGGTGGTGCGCAACAATCTGCGCGTCTGGCTCGGCGACGTGGTGATGATCCAGTCCTGCCCGGACGTCAAGTACGGCAAGCGCGTCCACATCCTGCCGATCGACGACACGGTCGAGGGTCTGTCGGGCAACCTGTTCGACGTGTACCTGAAGCCGTACTTCCTGGAGGCATACCGGCCCATCCACAAGGACGACACGTTCATCGTGCGCGGCGGCATGCGGGCGGTCGAGTTTAAGGT-GGTCGCGGCCGATCCGGAGCCGTACTGCATCGTCGCACCGGAGACGGTGATACACTGCGAGGGCAATCCGATCAAGCGCGAGGAGGAGGAGGAAACGCTGAACGCGGTCGGGTACGACGACATCGGCGGATGCCGCAAGCAGCTGGCGCAGATCAAGGAGATGGTCGAGCTGCCGCTGCGCCATCCGTCGCTGTTCAAGGCGATCGGTGTGAAGCCGCCGCGCGGCATTCTCATGTACGGTCCGCCCGGTACGGGCCAAAACGTTGATCGCGCGTGCGGTCGCGAACGAAACCGGTGCGTTCTTCTTCCTGATCAATGGGCCGGAAATTATGTCC]
[+] EMBL BM653734 [CCGCGGACGCGTGGGATTTGCCAAAAGCGAATCGGTTTTCTGCAGAGAGGAAGCTTGAGTCGAATCGAAGTTTTGTGGTAACATCCCCCCTCCGTTCGGAAGCAATCCGAAGAAACCGTTCTTCAAATGGCCGACAGCAAGAACGATGATTTGGCAACTGCCATCCTGAAGCGCAAGGATCGCCCGAACCGCTTGATCGTCGACGAAGCCGCTAACGATGACAACTCGGTTATTTCGTTGTCACAGGCAAAAATGGACGAGCTGGAGCTGTTCCGCGGCGACACGGTACTGTTGAAGGGCAAGCGCCGGAAAGAGACGGTCTGCATCGTCCTGTCGGACGAGAACTGCCCGGACGAGAAGATCCGCATGAACCGGGTGGTGCGCAACAATCTGCGCGTCTGGCTCGGCGACGTGGTGATGATCCAGTCCTGCCCGGACGTCAAGTACGGCAAGCGCGTCCACATCCTGCCGATCGACGACACGGTCGAGGGTCTGTCGGGCAACCTGTTCGACGTGTACCTGAAGCCGTACTTCCTGGAGGCATACCGGCCCATCCACAAGGACGACACGTTCATCGTGCGCGGCGGCATGCGGGCGGTCGAGTTTAAGGTGGGTCGCGGCCGATCCGGA ]
[+] EMBL BM578487 [ ccgTGATCGTCGACGAAGCCGCTAACGATGACAACTCGGTTATTTCGTTGTCACAGGCAAAAATGGACGAGCTGGAGCTGTTCCGCGGCGACACGGTACTGTTGAAGGGCAAGCGCCGGAAAGAGACGGTCTGCATCGTCCTGTCGGACGAGAACTGCCCGGACGAGAAGATCCGCATGAACCGGGTGGTGCGCAACAATCTGCGCGTCTGGCTCGGCGACGTGGTGATGATCCAGTCCTGCCCGGACGTCAAGTACGGCAAGCGCGTCCACATCCTGCCGATCGACGACACGGTCGAGGGTCTGTCGGGCAACCTGTTCGACGTGTACCTGAAGCCGTACTTCCTGGAGGCATACCGGCCCATCCACAAGGACGACACGTTCATCGTGCGCGGCGGCATGCGGGCGGTCGAGTTTAAGGT GGTCGCGGCCGATCCGGAGCCGTACTGCATCGTCGCACCGGAGACGGTGATACACTGCGAGGGCAATCCGATCAAGCGCGAGGAGGAGGAGGAAACGCTGAACGCGGTCGGGTACGACGACATCGGCGGATGCCGCAAGCAGCTGGCGCAGATCAAGGAGATGGTCGAGCTGCCGCTGCGCCATCCGTCGCTGTTCAAGGCGATCGGTGTGAAGCCGCCGCGCGGCATTCTCATGTACGGTCCGCCCGGTACGGGCCAAAACGTTGATCGCGCGTGCGGTCGCGA ]
[+] EMBL BM616222 [ ccgCGAAGCCGCTAACGATGACAACTCGGTTATTTCGTTGTCACAGGCAAAAATGGACGAGCTGGAGCTGTTCCGCGGCGACACGGTACTGCTGAAGGGCAAGCGCCGGAAAGAGACGGTCTGCATCGTCCTGTCGGACGAGAACTGCCCGGACGAGAAGATCCGCATGAACCGGGTGGTGCGCAACAATCTGCGCGTCTGGCTCGGCGACGTGGTGATGATCCAGTCCTGCCCGGACGTCAAGTACGGCAAGCGCGTCCACATCCTGCCGATCGACGACACGGTCGAGGGTCTGTCGGGCAACCTGTTCGACGTGTACCTGAAGCCGTACTTCCTGGAGGCGTACCGGCCCATCCACAAGGACGACACGTTCATCGTGCGCGGCGGCATGCGGGCGGTCGAGTTTAAGGT GGTCGCGGCCGATCCGGAGCCGTACTGCATCGTCGCACCGGAGACGGTGATACACTGCGAGGGCAATCCGATCAAGCGCGAGGAGGAGGAGGAAACGCTGAACGCGGTCGGGTACGACGACATCGGCGGATGCCGCAAGCAGCTGGCGCAGATCAAGGAGATGGTCGAGCTGCCGCTGCGCCATCCGTCGCTGTTCAAGGCGATCGGTGTGAAGCCGCCGCG ]
[+] EMBL BM590385 [ ccgCGGAAAGAGACGGTCTGCATCGTCCTGTCGGACGAGAACTGCCCGGACGAGAAGATCCGCATGAACCGGGTGGTGCGCAACAATCTGCGCGTCTGGCTCGGCGACGTGGTGATGATCCAGTCCTGCCCGGACGTCAAGTACGGCAAGCGCGTCCACATCCTGCCGATCGACGACACGGTCGAGGGTCTGTCGGGCAACCTGTTCGACGTGTACCTGAAGCCGTACTTCCTGGAGGCGTACCGGCCCATCCACAAGGACGACACGTTCATCGTGCGCGGCGGCATGCGGGCGGTCGAGTTTAAGGT GGTCGCGGCCGATCCGGAGCCGTACTGCATCGTCGCACCGGAGACGGTGATACACTGCGAGGGCAATCCGATCAAGCGCGAGGAGGAGGAGGAAACGCTGAACGCGGTCGGGTACGACGACATCGGCGGATGCCGCAAGCAGCTGGCGCAGATCAAGGAGATGGTCGAGCTGCCGCTGCGCCATCCGTCGCTGTTCAAGGCGATCGGTGTGAAGCCGCCGCGCGGCATTCTCATGTACGGTCCGCCCGGTACGGG CAAAACGTTGATCGCGCGTGCGGTCGCGAACGAAACCGGTGCGTTCTTCTTCCTGATCAATGGGCCGGAAATTATGTCC]
consensusID : consensus_7913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 707 fasta sequence
[CCGCATCGCTGCTTCGCGTTCGGGTCGTTGTCTTCGTCGCTCCCTGCTCTGTGCGCTTGCGGTTATAGCTCGGTAACCCTCCGTAGCCTGTAGTTAAGAGACTGAACCAGATTTTCGTCACCTACCAAAAACCCAATAGAAACGCATCAACAAAGGAAGTGTGCACGTCGTAGCAAGCTGCGACCAGGATAATTGTGATTGTGCTCTCGGGAAATCCGGCATCCAGTGAGGCGACAGGCGAAGTGTGAAAAGCGTGCGGCGTGTGTGTGTGTGCCCGTTTTCCCACCCATAGCACGGATTACATTTGCCAAAAGCGAATCGGTTTTCTGCAGAGAGGAAGCTTGAGTCGAATCGAAGTTTTGTGGTAACATCCCCGCCCCCGGTCGGAAGCAATTCGAAGAAACCGTTCTTCAAATGGCCGACAGCAAGAACGATGATTTGGCAACTGCCATCCTGAAGCGCAAGGATCGCCCGAACCGCTTGATCGTCGACGAAGCCGCTAACGATGACAACTCGGTTATTTCGTTGTCACAGGCAAAAATGGACGAGCTGGAGCTGTTCCGCGGCGACACGGTACTGCTGAAGGGCAAGCGCCGGAAAGAGACGGTCTGCATCGTCCTGTCGGACGAGAACTGCCCGGACGAGAAGATCCGCATG-AACCGGGTGGTGCGCAACAATCTGCGCGTCTGGCTCGGCGACGTGGTGAT]
[+] EMBL BM614716 [CCGCATCGCTGCTTCGCGTTCGGGTCGTTGTCTTCGTCGCTCCCTGCTCTGTGCGCTTGCGGTTATAGCTCGGTAACCCTCCGTAGCCTGTAGTTAAGAGACTGAACCAGATTTTCGTCACCTACCAAAAACCCAATAGAAACGCATCAACAAAGGAAGTGTGCACGTCGTAGCAAGCTGCGACCAGGATAATTGTGATTGTGCTCTCGGGAAATCCGGCATCCAGTGAGGCGACAGGCGAAGTGTGAAAAGCGTGCGGCGTGTGTGTGTGTGCCCGTTTTCCCACCCATAGCACGGATTACATTTGCCAAAAGCGAATCGGTTTTCTGCAGAGAGGAAGCTTGAGTCGAATCGAAGTTTTGTGGTAACATCCCCGCCCCCGGTCGGAAGCAATTCGAAGAAACCGTTCTTCAAATGGCCGACAGCAAGAACGATGATTTGGCAACTGCCATCCTGAAGCGCAAGGATCGCCCGAACCGCTTGATCGTCGACGAAGCCGCTAACGATGACAACTCGGTTATTTCGTTGTCACAGGCAAAAATGGACGAGCTGGAGCTGTTCCGCGGCGACACGGTACTGCTGAAGGGCAAGCGCCGGAAAGAGACGGTCTGCATCGTCCTGTCGGACGAGAACTGCCCGGACGAGAAGATCCGCATGAAACCGGGTGGTGCGCAACAATCTG ]
[+] EMBL BM588942 [ ccgCGCTGCTTCGCGTTCGGGTCGTTGTCTTCCTCGCTCCCTGCTCTGTGCGCTTGCGGTTATAGCTCGGTAACCCTCCGTAGCCTGTAGTTAAGAGACTGAACCAGATTTTCGTCACCTACCAAAAACCCAATAGAAACGCATCAACAAAGGAAGTGTGCACGTCGTAGCAAGCTGCGACCAGGATAATTGTGATTGTGCTCTCGGGAAATCCGGCATCCAGTGAGGCGACAGGCGAAGTGTGAAAAGCGTGCGGCGTGTGTGTGTGTGCCCGTTTTCCCACCCATAGCACGGATTACATTTGCCAAAAGCGAATCGGTTTTCTGCAGAGAGGAAGCTTGAGTCGAATCGAAGTTTTGTGGTAACATCCCCGCCCCCGGTCGGAAGCAATTCGAAGAAACCGTTCTTCAAATGGCCGACAGCAAGAACGATGATTTGGCAACTGCCATCCTGAAGCGCAAGGATCGCCCGAACCGCTTGATCGTCGACGAAGCCGCTAACGATGACAACTCGGTTATTTCGTTGTCACAGGCAAAAATGGACGAGCTGGAGCTGTTCCGCGGCGACACGGTACTGCTGAAGGGCAAGCGCCGGAAAGAGACGGTCTGCATCGTCCTGTCGGACGAGAACTGCCCGGACGAGAAGATCCGCATGg ]
[+] EMBL BM578016 [ ccgCCCTCCGTAGCCTGTAGTTAAGAGACTGAACCAGATTTTCGTCACCTACCAAAAACCCAATAGAAACGCATCAACAAAGGAAGTGTGCACGTCGTAGCAAGCTGCGACCAGGATAATTGTGATTGTGCTCTCGGGAAATCCGGCATCCAGTGAGGCGACAGGCGAAGTGTGAAAAGCGTGCGGCGTGTGTGTGTGTGCCCGTTTTCCCACCCATAGCACGGATTACATTTGCCAAAAGCGAATCGGTTTTCTGCAGAGAGGAAGCTTGAGTCGAATCGAAGTTTTGTGGTAACATCCCCGCCCCCGGTCGGAAGCAATTCGAAGAAACCGTTCTTCAAATGGCCGACAGCAAGAACGATGATTTGGCAACTGCCATCCTGAAGCGCAAGGATCGCCCGAACCGCTTGATCGTCGACGAAGCCGCTAACGATGACAACTCGGTTATTTCGTTGTCACAGGCAAAAATGGACGAGCTGGAGCTGTTCCGCGGCGACACGGTACTGCTGAAGGGCAAGCGCCGGAAAGAGACGGTCTGCATCGTCCTGTCGGACGAGAACTGCCCGGACGAGAAGATCCGCATG AACCGGGTGGTGCGCAACAATCTGCGCGTCTGGCTCGGCGACGTGGTGAT]
[+] EMBL BM591799 [ ccgcggacgCGTGGGCTGTAGTTAAGAGACTGAACCAGATTTTCGTCACCTACCAAAAACCCAATAGAAACGCATCAACAAAGGAAGTGTGCACGTCGTAGCAAGCTGCGACCAGGATAATTGTGATTGTGCTCTCGGGAAATCCGGCATCCAGTGAGGCGACAGGCGAAGTGTGAAAAGCGTGCGGCGTGTGTGTGTGTGCCCGTTTTCCCACCCATAGCACGGATTACATTTGCCAAAAGCGAATCGGTTTTCTGCAGAGAGGAAGCTTGAGTCGAATCGAAGTTTTGTGGTAACATCCCCGCCCCCGGTCGGAAGCAATTCGAAGAAACCGTTCTTCAAATGGCCGACAGCAAGAACGATGATTTGGCAACTGCCATCCTGAAGCGCAAGGATCGCCCGAACCGCTTGATCGTCGACGAAGCCGCTAACGATGACAACTCGGTTATTTCGTTGTCACAGGCAAAAATGGACGAGCTGGAGCTGTTCCGCGGCGACACGGTACTGCTGAAGGGCAAGCGCCGGAAAGAGACGGTCTGCATCGTCCTGTCGGACGAGAACTGCCCGGACGAGAAGATCCGCATG AACCGGGTGGTGCGCAACAATCTGCGCGTCTGGCTCGGCGACGTGGTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7913#0 ------------------------------------------------------------
consensus_7913#1 CCGCATCGCTGCTTCGCGTTCGGGTCGTTGTCTTCGTCGCTCCCTGCTCTGTGCGCTTGC 60
consensus_7913#0 ------------------------------------------------------------
consensus_7913#1 GGTTATAGCTCGGTAACCCTCCGTAGCCTGTAGTTAAGAGACTGAACCAGATTTTCGTCA 120
consensus_7913#0 ------------------------------------------------------------
consensus_7913#1 CCTACCAAAAACCCAATAGAAACGCATCAACAAAGGAAGTGTGCACGTCGTAGCAAGCTG 180
consensus_7913#0 ------------------------------------------------------------
consensus_7913#1 CGACCAGGATAATTGTGATTGTGCTCTCGGGAAATCCGGCATCCAGTGAGGCGACAGGCG 240
consensus_7913#0 ----------------------------------------------CCGCGG-ACGCGTG 13
consensus_7913#1 AAGTGTGAAAAGCGTGCGGCGTGTGTGTGTGTGCCCGTTTTCCCACCCATAGCACGGATT 300
** * *** *
consensus_7913#0 GGATTTGCCAAAAGCGAATCGGTTTTCTGCAGAGAGGAAGCTTGAGTCGAATCGAAGTTT 73
consensus_7913#1 ACATTTGCCAAAAGCGAATCGGTTTTCTGCAGAGAGGAAGCTTGAGTCGAATCGAAGTTT 360
**********************************************************
consensus_7913#0 TGTGGTAACATCCCC-CCTCCGTTCGGAAGCAATCCGAAGAAACCGTTCTTCAAATGGCC 132
consensus_7913#1 TGTGGTAACATCCCCGCCCCCGGTCGGAAGCAATTCGAAGAAACCGTTCTTCAAATGGCC 420
*************** ** *** *********** *************************
consensus_7913#0 GACAGCAAGAACGATGATTTGGCAACTGCCATCCTGAAGCGCAAGGATCGCCCGAACCGC 192
consensus_7913#1 GACAGCAAGAACGATGATTTGGCAACTGCCATCCTGAAGCGCAAGGATCGCCCGAACCGC 480
************************************************************
consensus_7913#0 TTGATCGTCGACGAAGCCGCTAACGATGACAACTCGGTTATTTCGTTGTCACAGGCAAAA 252
consensus_7913#1 TTGATCGTCGACGAAGCCGCTAACGATGACAACTCGGTTATTTCGTTGTCACAGGCAAAA 540
************************************************************
consensus_7913#0 ATGGACGAGCTGGAGCTGTTCCGCGGCGACACGGTACTGTTGAAGGGCAAGCGCCGGAAA 312
consensus_7913#1 ATGGACGAGCTGGAGCTGTTCCGCGGCGACACGGTACTGCTGAAGGGCAAGCGCCGGAAA 600
*************************************** ********************
consensus_7913#0 GAGACGGTCTGCATCGTCCTGTCGGACGAGAACTGCCCGGACGAGAAGATCCGCATGAAC 372
consensus_7913#1 GAGACGGTCTGCATCGTCCTGTCGGACGAGAACTGCCCGGACGAGAAGATCCGCATGAAC 660
************************************************************
consensus_7913#0 CGGGTGGTGCGCAACAATCTGCGCGTCTGGCTCGGCGACGTGGTGATGATCCAGTCCTGC 432
consensus_7913#1 CGGGTGGTGCGCAACAATCTGCGCGTCTGGCTCGGCGACGTGGTGAT------------- 707
***********************************************
consensus_7913#0 CCGGACGTCAAGTACGGCAAGCGCGTCCACATCCTGCCGATCGACGACACGGTCGAGGGT 492
consensus_7913#1 ------------------------------------------------------------
consensus_7913#0 CTGTCGGGCAACCTGTTCGACGTGTACCTGAAGCCGTACTTCCTGGAGGCATACCGGCCC 552
consensus_7913#1 ------------------------------------------------------------
consensus_7913#0 ATCCACAAGGACGACACGTTCATCGTGCGCGGCGGCATGCGGGCGGTCGAGTTTAAGGTG 612
consensus_7913#1 ------------------------------------------------------------
consensus_7913#0 GTCGCGGCCGATCCGGAGCCGTACTGCATCGTCGCACCGGAGACGGTGATACACTGCGAG 672
consensus_7913#1 ------------------------------------------------------------
consensus_7913#0 GGCAATCCGATCAAGCGCGAGGAGGAGGAGGAAACGCTGAACGCGGTCGGGTACGACGAC 732
consensus_7913#1 ------------------------------------------------------------
consensus_7913#0 ATCGGCGGATGCCGCAAGCAGCTGGCGCAGATCAAGGAGATGGTCGAGCTGCCGCTGCGC 792
consensus_7913#1 ------------------------------------------------------------
consensus_7913#0 CATCCGTCGCTGTTCAAGGCGATCGGTGTGAAGCCGCCGCGCGGCATTCTCATGTACGGT 852
consensus_7913#1 ------------------------------------------------------------
consensus_7913#0 CCGCCCGGTACGGGCCAAAACGTTGATCGCGCGTGCGGTCGCGAACGAAACCGGTGCGTT 912
consensus_7913#1 ------------------------------------------------------------
consensus_7913#0 CTTCTTCCTGATCAATGGGCCGGAAATTATGTCC 946
consensus_7913#1 ----------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||