These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7915#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1587 fasta sequence [GATAGCGGACAAAACAGGGGTGCAGAATGCCGACAAACAACGCACGTTCTTTCGAACGGGATTTAATTTCAGGGTCCAACGAGGCGCCCTCCCTTGCGGAACGATCCAGAACAGCTGGTG-TCGATCAGAGACAACACAACCGGCCCGAACATGACCACAGACGGAGACATCAATGGTTCAGA-GGGAAAT-AAAAGTGTTGCGTCTACTTGTGCTTCCGAGTGTAACAATTCGGCTGCTGTCGCCGAATGCACGGATGATGAGGATGCTTATTTTAAGAAGGAAGGAAGCTATGCTCCCCAAGAGGAAAAAAAACGAAGGAAGCCAGCTTACTCAAAGAAAAAACAGAAAAACAATTATCATGATAGAGCCAGCACACCAGGCCCGAACATGACCACGAACGGAAGCATCCATAGTTCAGAGGGAAATAAAAACGTATCGACTACTTTTGCTTCCGAGCGTAACGATTCGGCTACTGTCGGCGAATGCACGGATGATAAGGACTCTTCTTTTGATGAGGAAGAAAGCTATGCTCCCCAATGGACAACTGTGATAGTTATTATAATTCCCTTCCTCGTTTGTTTCATGCTACAAAGCAAACCGGTGGAAGGTGAACCATTCTATAAGCTAGGAACCACCTACCCAACCGTAGATCAAAACCTGTGGCAGATGCTGAGCGTTAGTGTGCGGCGTGCCATCACCACCGTCGACAATCCTGAACCCGGAACCATACTGTTCCTCCACTACGGCCCCACCGACATACTGGACGGGCTCATTGACAGTGTGATCGCGGTAACGACCAGCCACTTCGGGAACACGGACGCGATCCGGCTGCCTGGCGCACACTTCAAGCGGTCCGACATCCAGCAAGACTTTGGCGTGTTTGTGGCGCACAAAAAGGAAGCCTTACGGCAGCGAAG-GTAA-TGCTGGTGCGAAATCTTGAGGATGTGCCAGAACGGTCAGCTCGAGCATTCCACACGATTTGTGACACGCAGGAGCCACTGGTGGGCAGGGCGGTCATTTATCTAACGCTCGATATGGCCAAGGCAGCTGGTATGCACGAGCCGAGCAATGTCAGTGCCACAGAGGAAGCGGAACGCTTGTTGCAGAAGTTGTGGGGAGATTCGTTAGAACCGGCAGTGCTAGGACCGCTGATTGCCCGGCTGACGGATAATGTGTTCCGGATTGTTTGAGGAAGTTAGCTGGTAGAGAGGACCAGGAAAGCAGCGGTTGTGTTCCCATCGG-ATGATTCGAAATCCTCGTACGCCGGAATATTGCGATTATTGCATCCGATTGCGTGTCCAAGGCATGTAACCATGGAACCACTTGCTGTTGTCATGCTGTCGAAGAGAAAAAAAATTGTAAACAATATGCTCCTTCTCTTTTCCACTACCGATCTGTCACGCTTCTTGCGCTCCCAGATGTTTGCACTAAAACTGTCGCACGTTTCGCACATCTGTCAAACTACTTACCACAGAAACTGTTCTTTAAATTAAAGCCTAAATTTTTATTCGGACGATAGAGATTTTTCCCACATAGCTAAGACGAATAAATGAACTGAATTCGCATGGAACCAACAAGCTGTTGTCA] [+] EMBL CNS08E3B [GATAGCGGACAAAACAGGGGTGCAGAATGCCGACAAACAACGCACGTTCTTTCGAACGGGATTTAATTTCAGGGTCCAACGAGGCGCCCTCCCTTGCGGAACGATCCAGAACAGCTGGTG TCGATCAGAGACAACACAACCGGCCCGAACATGACCACAGACGGAGACATCAATGGTTCAGA GGGAAAT AAAAGTGTTGCGTCTACTTGTGCTTCCGAGTGTAACAATTCGGCTGCTGTCGCCGAATGCACGGATGATGAGGATGCTTATTTTAAGAAGGAAGGAAGCTATGCTCCCCAAGAGGAAAAAAAACGAAGGAAGCCAGCTTACTCAAAGAAAAAACAGAAAAACAATTATCATGATAGAGCCAGCACACCAGGCCCGAACATGACCACGAACGGAAGCATCCATAGTTCAGAGGGAAATAAAAACGTATCGACTACTTTTGCTTCCGAGCGTAACGATTCGGCTACTGTCGGCGAATGCACGGATGATAAGGACTCTTCTTTTGATGAGGAAGAAAGCTATGCTCCCCAATGGACAACTGTGATAGTTATTATAATTCCCTTCCTCGTTTGTTTCATGCTACAAAGCAAACCGGTGGAAGGTGAACCATTCTATAAGCTAGGAACCACCTACCCAACCGTAGATCAAAACCTGTAAAAAAAGCTGAGCGTTAGTGTGCGGCGTGCCATCACCACCGTCGACAATCCTGAACCCGGAACCATACTGTTCCTCCACTACGGCCCCACCGACATACTGGATGGGCTCATTGACAGTGTGATCGCGGTAACGACCAGCCACTTTGGGAACACGGACGCGATCCGGCTGCCCGGCGCACACTTCAAGCGGTCCGACATCCAGCAAGACTTTGGCGTGTTTGTGGCGCACAAAAAGGAAGCCTTACGGCAGCGAAG GAAATTGCTGGTGCGAAATCTTGAGGATGT ] [+] EMBL CNS09BJ9 [ cAATTTCAGGGTCCAACGAGGCGCCCTCCCTTGCGGAACGATCCAGAACAGCTGGTGTTCGATCAGAGACAACACAACCGGCCCGAACATGACCACAGACGGAGACATCAATGGTTCAGAGGGGAAAT AAAAGTGTTGCGTCTACTTGTGCTTCCGAGTGTAACAATTCGGCTGCTGTCGCCGAATGCACGG ] [+] EMBL CNS098Y0 [ TCGATCAGAGACAACACAACCGGCCCGAACATGACCACAGACGGAGACATCAATGGTTCAGA GGGAAATAAAAAGTGTTGCGTCTACTTGTGCTTCCGAGTGTAACAATTCGGCTGCTGTCGCCGAATGCACGGATGATGAGGATGCTTATTTTAAGAAGGAAGGAAGCTATGCTCCCCAAGAGGAAAAACTACGAAGGAAGCCAGCAAACTCAAAGAAAAAACAGAAAAACAATTATCATGATAGAGCCAGCACACCAGGCCCGAACATGACCACGAACGGAAGCATCCATAGTTCAGAGGGAAATAAAAACGTATCGACTACTTTTGCTTCCGAGCGTAACGATTCGGCTACTGTCGGCGAATGCACGGATGATAAGGACTCTTCTTTTGATGAGGAAGAAAGCTATGCTCCCCAATGGACAACTGTGATAGTTATTATAATTCCCTTCCTCGTTTGTTTCATGCTACAAAGCAAACCGGTGGAAGGTGAACCATTCTATAAGCTAGGAACCACCTACCCAACCGTAGATCAAAACCTGTGGCAGATGCTGAGCGTTAGTGTGCGGCGTGCCATCACCACCGTCGACAATCCTGAACCCGGAACCATACTGTTCCTCCAC ] [+] EMBL BM605956 [ ccGCCACAAAGCAAACCGGTGGAAGGTGAACCATTCTATAAGCTAGGAACCGCCTACCCAACCGTAGATCAAAACCTATGGCAGATGCTGAGCGTTAGTGTGCGGCGTGCCATCACCACCGTCGACAATCCTGAACCCGGAACCATACTGTTCCTTCACTACGGCCCCACCGACATACTGGACGGGCTCATTGACAGTGTGATCGCGGTAACGACCAGCCACTTCGGGAACACGGACGCGATCCGGCTGCCTGGCGCACACTTCAAGCGGTCCGACATCCAGCAAGACTTTGGCGTGTTTGTGGCGCAGCAAAAGGAAGCCTTACGGCAGCGAAGCGTAA TGCTGGTGCGAAATCTTGAGGATGTGCCGGCACGGTCAGCTCGAGCATTCCACACGATTTGTGACACGCAGGAGCCACTGGTGGGCAGGGCGGTCATTTATCTAACGCTCGATATGGCCAAGGCAGCTGGCATGCACGAGCCGAGCAATGTCAGTGCCACAGCGGAAGCGGAACGCTTGTTGCAGAAGCTGTGGGGAGATTCGTTAGAACCGGCAGTGCTAGGACCGCTGATTACCCGGCTGACGGATAATGTGTTCCGAATTGTTTGAGGAAGTTAGCTGGTGGAGAGGTCCAGCAAAGCAGCGGTTGTGTTCCCATCGGAAGGATTCGAAGTCCTCGTACGCCGGAATATTGCGATTATTGCA ] [+] EMBL BX605109 [ ACGGGACGGGCTCATTGACAGTGTGATCGCGGTAACGACCAGCCACATCGGGAACACGGACGCGATCCGGCGGCCTGGCGCACACTTCAAGCGGTCCGACATCCAGC ] [-] EMBL CNS08E3C [ GTAA TGCTGGTGCGAAATCTTGAGGATGTGAAAGAACCGTCAGCTCGAGCATTCCACACGATTTGTGACACGCAGGAGCCACTGGTGGGCAGGGCGGTCATTTATCTAACGCTCGATATGGCCAAGGCAGCTGGTATGCACGAGCCGAGCAATGTCAGTGCCACAGAGGAAGCGGAACGCTTGTTGCAGAAGTTGTGGGGAGATTCGTTAGAACCGGCAGTGCTAGGACCGCTGATTGCCCGGCTGACGGATAATGTGTTCCGGATTGTTTGAGGAAGTTAGCTGGTAGAGAGGACCAGGAAAGCAGCGGTTGTGTTCCCATCGG ATGAACCGAAATCCTCGTTTTTCGGAATATTGCGATTATTGCATCCGATTGCGTGTCCAAGGCATGTAACCATGGAACCACTTGCTGTTGTCATGCTGTCGAAGAGAAAAAAAATTGTAAACAATATGCTCCTTCTCTTTTCCACTACCGATCTGTCACGCTTCTTGCGCTCCCAGATGTTTGCACTAAAACTGTCGCACGTTTCGCACATCTGTCAAACTACTTACCACAGAAACTGTTCTTTAAATTAAAGCCTAAATTTTTATTCGGACGATAGAGATTTTTCCCACATAGCTAAGACGAATAAATGAACTGAATTCGCATGGAACCAACAAGCTGTTGTCA] [-] EMBL CNS098Y1 [ TGAGGATGGGCCAGAGGGGTCAGCTCGAGCATTCCACACGATTTGTGACACGCAGGAGCCACTGGTGGGCAGGGCGGTCATTTATCTAACGCTCGATATGGCCAAGGCAGCTGGTATGCACGAGCCGAGCAATGTCAGTGCCACAGAGGAAGCGGAACGCTTGTTGCAGAAGTTGTGGGGAGATTCGTTAGAACCGGCAGTGCTAGGACCGCTGATTGCCCGGCTGACGGATAATGTGTTCCGGATTGTTTGAGGAAGTTAGCTGGTAGAGAGGACCAGGAAAGCAGCGGTTGTGTTCCCATCGG ATGATTCGAAATCCTCGTACCCCGGAATATTGCGATTATTGCATCCGATTGCtttt ] consensusID : consensus_7915#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence [CCAACACAACAGGTCCGAACATGACCACAGACGGAGACATCAATGCTTCAGAGGGAAATAACAATGTTGCGTCTACTTTTGTTTCCAAGCGTAACAATTCGGCTGCTGCCGGCGAATGCACGGATGATGAGGATGCTTATTTTAAGAAGGAAGGAAGTTATGCTCCCCAAGAGGAACAGGTACGAAGGAAGACAGCGAATTCAAAGAAAGCACAGAAAAACAATAATCGTGATAGAGCCAGCACACCAGGCCCGAACATGACCACGAACGGAAACATCCATAGTTCAGAGGGAAATAAAAACGTTTTGACGACTTTTTTTGCTTCCGAGCGTAACNATTCGGCTACTGTCGGCGAATGCGCGGATGATGAGGACTCTTCTTTTGATGAGGAAGAAAGCTATGCTCCCCAAGAGAGAGAAGTACCAACTAACACAGCTAGCCCAAAGGAAAAGCCGAAACCTGCACCAACGCTGGAAACGGAGAAAAGTGGAGGGAGTGTCTGGATTGGTAGATTGACAACTGTGATATTTATTATAATTGCCTTCCTCGNTTGTTTCATGCCNCAAAGCAAACCGGTGGAAGGTGAACCATTCTATAAGCTAGGAACCCGCCTACCCAACCGTAAATCAAAACCTATGGCAGATG] [+] EMBL BX628879 [CCAACACAACAGGTCCGAACATGACCACAGACGGAGACATCAATGCTTCAGAGGGAAATAACAATGTTGCGTCTACTTTTGTTTCCAAGCGTAACAATTCGGCTGCTGCCGGCGAATGCACGGATGATGAGGATGCTTATTTTAAGAAGGAAGGAAGTTATGCTCCCCAAGAGGAACAGGTACGAAGGAAGACAGCGAATTCAAAGAAAGCACAGAAAAACAATAATCGTGATAGAGCCAGCACACCAGGCCCGAACATGACCACGAACGGAAACATCCATAGTTCAGAGGGAAATAAAAACGTTTTGACGACTTTTTTTGCTTCCGAGCGTAACNATTCGGCTACTGTCGGCGAATGCGCGGATGATGAGGACTCTTCTTTTGATGAGGAAGAAAGCTATGCTCCCCAAGAGAGAGAAGTACCAACTAACACAGCTAGCCCAAAGGAAAAGCCGAAACCTGCACCAACGCTGGAAACGGAGAAAAGTGGAGGGAGTGTCTGGATTGGTAGATTGACAACTGTGATATTTATTATAATTGCCTTCCTCGNTTGTTTCATGCCNCAAAGCAAACCGGTGGAAGGTGAACCATTCTATAAGCTAGGAACCCGCCTACCCAACCGTAAATCAAAACCTATGGCAGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7915#0 GATAGCGGACAAAACAGGGGTGCAGAATGCCGACAAACAACGCACGTTCTTTCGAACGGG 60 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 ATTTAATTTCAGGGTCCAACGAGGCGCCCTCCCTTGCGGAACGATCCAGAACAGCTGGTG 120 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 TCGATCAGAGACAACACAACCGGCCCGAACATGACCACAGACGGAGACATCAATGGTTCA 180 consensus_7915#1 ----------CCAACACAACAGGTCCGAACATGACCACAGACGGAGACATCAATGCTTCA 50 ********* ** ******************************* **** consensus_7915#0 GAGGGAAATAAAAGTGTTGCGTCTACTTGTGCTTCCGAGTGTAACAATTCGGCTGCTGTC 240 consensus_7915#1 GAGGGAAATAACAATGTTGCGTCTACTTTTGTTTCCAAGCGTAACAATTCGGCTGCTGCC 110 *********** * ************** ** **** ** ****************** * consensus_7915#0 GCCGAATGCACGGATGATGAGGATGCTTATTTTAAGAAGGAAGGAAGCTATGCTCCCCAA 300 consensus_7915#1 GGCGAATGCACGGATGATGAGGATGCTTATTTTAAGAAGGAAGGAAGTTATGCTCCCCAA 170 * ********************************************* ************ consensus_7915#0 GAGGAAAAAAAACGAAGGAAGCCAGCTTACTCAAAGAAAAAACAGAAAAACAATTATCAT 360 consensus_7915#1 GAGGAACAGGTACGAAGGAAGACAGCGAATTCAAAGAAAGCACAGAAAAACAATAATCGT 230 ****** * ********** **** * ********* ************* *** * consensus_7915#0 GATAGAGCCAGCACACCAGGCCCGAACATGACCACGAACGGAAGCATCCATAGTTCAGAG 420 consensus_7915#1 GATAGAGCCAGCACACCAGGCCCGAACATGACCACGAACGGAAACATCCATAGTTCAGAG 290 ******************************************* **************** consensus_7915#0 GGAAATAAAAACGTATCGACTACTTTT---GCTTCCGAGCGTAACGATTCGGCTACTGTC 477 consensus_7915#1 GGAAATAAAAACGTTTTGACGACTTTTTTTGCTTCCGAGCGTAACNATTCGGCTACTGTC 350 ************** * *** ****** *************** ************** consensus_7915#0 GGCGAATGCACGGATGATAAGGACTCTTCTTTTGATGAGGAAGAAAGCTATGCTCCCCAA 537 consensus_7915#1 GGCGAATGCGCGGATGATGAGGACTCTTCTTTTGATGAGGAAGAAAGCTATGCTCCCCAA 410 ********* ******** ***************************************** consensus_7915#0 TGGACAACTGTGATAGTTATTATAATTCCCTTCCTCGTTTGTTTCATGCTACAAAGCAAA 597 consensus_7915#1 GAGAGAGAAGTACCAACTAACACAGCTAGCCCAAAGGAAAAGCCGAAACC-TGCACCAA- 468 ** * ** * ** * * * * * * * * *** consensus_7915#0 CCGGTGGAAGGTGAACCATTCTATAAGCTAGGAACCACCTACCCAACCGTAGATCAAAAC 657 consensus_7915#1 -CGCTGGAAACGGAG------AAAAGTGGAGGGAGTGTCTGG--ATTGGTAGATTGACAA 519 ** ***** ** * * *** * ** * ****** * * consensus_7915#0 CTGTGGCAGATGCTGAGCGTTAGTGTGCGGCGTGCCATCACCACCGTCGACAATCC--TG 715 consensus_7915#1 CTGTGATATTTATTATAATTGCCTTCCTCGNTTGTT-TCATGCCNCAAAGCAAACCGGTG 578 ***** * * * * * * ** *** * *** ** ** consensus_7915#0 AACCCGGAACCATACTGTTCCTCCACTACGGCCCCACCGACATACTGGACGGGCTCATTG 775 consensus_7915#1 GAAGGTGAACCATTCTATAAGCTAGGAACCCGCCTACCCAACCGTAAATCAAAACCTATG 638 * ******* ** * ** ** *** * * * ** consensus_7915#0 ACAGTGTGATCGCGGTAACGACCAGCCACTTCGGGAACACGGACGCGATCCGGCTGCCTG 835 consensus_7915#1 GCAG-ATG---------------------------------------------------- 645 *** ** consensus_7915#0 GCGCACACTTCAAGCGGTCCGACATCCAGCAAGACTTTGGCGTGTTTGTGGCGCACAAAA 895 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 AGGAAGCCTTACGGCAGCGAAGGTAATGCTGGTGCGAAATCTTGAGGATGTGCCAGAACG 955 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 GTCAGCTCGAGCATTCCACACGATTTGTGACACGCAGGAGCCACTGGTGGGCAGGGCGGT 1015 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 CATTTATCTAACGCTCGATATGGCCAAGGCAGCTGGTATGCACGAGCCGAGCAATGTCAG 1075 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 TGCCACAGAGGAAGCGGAACGCTTGTTGCAGAAGTTGTGGGGAGATTCGTTAGAACCGGC 1135 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 AGTGCTAGGACCGCTGATTGCCCGGCTGACGGATAATGTGTTCCGGATTGTTTGAGGAAG 1195 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 TTAGCTGGTAGAGAGGACCAGGAAAGCAGCGGTTGTGTTCCCATCGGATGATTCGAAATC 1255 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 CTCGTACGCCGGAATATTGCGATTATTGCATCCGATTGCGTGTCCAAGGCATGTAACCAT 1315 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 GGAACCACTTGCTGTTGTCATGCTGTCGAAGAGAAAAAAAATTGTAAACAATATGCTCCT 1375 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 TCTCTTTTCCACTACCGATCTGTCACGCTTCTTGCGCTCCCAGATGTTTGCACTAAAACT 1435 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 GTCGCACGTTTCGCACATCTGTCAAACTACTTACCACAGAAACTGTTCTTTAAATTAAAG 1495 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 CCTAAATTTTTATTCGGACGATAGAGATTTTTCCCACATAGCTAAGACGAATAAATGAAC 1555 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 TGAATTCGCATGGAACCAACAAGCTGTTGTCA 1587 consensus_7915#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||