These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7936#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1341 fasta sequence [CAAGTGTGCCAAGCGGCCTGTTTTCGTAGTAGCGTCCCTTCGATACAGACAACTGTGATTGAAATTGGCTTTCGACGTGCATAAACTCAGCTCCATACATCATGTCCGACCTAAAACAGTGCCCGTTCGAGGTGACGCATCTGATCGAGGGCAAATCGTTCGCAATGCATATCGTCAAGTGCCAACGA-CAACATCCGGACATCAAACTGGCCCGATGCCATCTCGACACGTCCCACCTGATGCGGGAGGAGGAGCTGCAGCAACACATGAAGACGTGCACGAGCCGTGGCCAGCTGGATGCGTACAAGTACAGCCTCACGACGGGGGCCGCTAGCCGTGTATCGAGCCTGCCCGATCCGGCCGACGATCTCATCATCAACACAACCGAACCGATCATACGAAGAGGAGGAGGAGCCGGCGGCGGCGGCGGTCGTGGTCGTGGTGGTGGCCGCGGTGGCACTACCAG-CACAAC-GGTCGGACAGACGTTGCTGGACGATACCGAGTGTTGGGACGATTCGGACTGCAAGGCGTACGATCCGCTGGAAAGCTGCCGAGCGAAAAAGAACGAAAATGCAGCCTTTATCACACCGAAGATAAATCAGTTTGTGGAGCAGCGAACGGCAGCCGCTGTGCTGAAGAACGACAGCGGGACGAAGCGAGAACCAACCTCAGACG-AAGAATTCGGTAGCAGTGCGCTGAACGAGCGCCAGAATGATCTTGAACAGTTTGGGCTGCGACGAAACGCTTCACACGGCGCGAATACTGGAAGAGTTGTCAGTGGCCGGTATGGCGAAATGAAGCAAGAACCAGGTAGCTCGGGCAGCAGGGAACGTGATGATAGACATTCGGGAGTGCGGTCCAACTCTCGCAGCGGGTATGAAGCGGGTGAACGGAACCCGTACAGTAGACGATCGGATAGCGGTGGGTATCACGATCGAGAGCGGCACGGATACGATCGTCGTAGCGATGGATATTCGAGCAGAGACCGGTACGACAGTCGGCACCGTA-GGAT-GGGTATGATTCGGAATCTAGGAGCTCTCGAGGATACGGTCGAAATGACGATGATGGTTCCCGCAACCGGGGACATGGCAACGATAGGTACCAACCGTACGGAGGTAGCTCCTATCGATCGCACAGAACGAGTGATTCCACCGAACGAGGTAGTGACTATTCTGCGAAATATCCAAACCACGAACGTGACCATTAATTTTAACGAAAAATCTGAACTGAAATAATGCTGTTAGCGGTACGAATTAGCATAGAACAATGTACAATGAAGAAAATGAATGGAATTTTTTTCGCGAATAAACATGCATACGGAAATTGCAAACGCTATCGTAG] [+] EMBL CNS08QGJ [CAAGTGTGCCAAGCGGCCTGTTTTCGTAGTAGCGTCCCTTCGATACAGACAACTGTGATTGAAATTGGCTTTCGACGTGCATAAACTCAGCTCCATACATCATGTCCGACCTAAAACAGTGCCCGTTCGAGGTGACGCATCTGATCGAGGGCAAATCGTTCGCAATGCATATCGTCAAGTGCCAACGA CAACATCCGGACATCAAACTGGCCCGATGCCATCTCGACACGTCCCACCTGATGCGGGAGGAGGAGCTGCAGCAACACATGAAGACGTGCACGAGCCGTGGCCAGCTGGATGCGTACAAGTACAGCCTCACGACGGGGGCCGCTAGCCGTGTATCGAGCCTGCCCGATCCGGCCGACGATCTCATCATCAACACAACCGAACCGATCATACGAAGAGGAGGAGGAACCGGCGGCGGCGGCGGTCGTGGTCGTGGTGGTGGCCGCGGTGGCACTACCAG CACAAC GGTCGGACAGACGTTGCTGGACGATACCGAGTGTTGGGACGATTCGGACTGCAAGGCGTACGATCCGCTGGAAAGCTGCCGAGCGAAAAAGAACGAAAATGCAGCCTTTATCACACCGAAGATAAATCAGTTTGTGGAGCAGCGAACGGCTGCCGCTGTACTGAAGAACGACAGTGTGACGAAGCGAGAACCAACCTCGGACG AAGAATTCGGTA ] [+] EMBL CNS09BE2 [ TTTTCGTAGTAGCGTCCCTTCGATACAGACAACTGTGATTGAAATTGGCTTTCGACGTGCATAAACTCAGCTCCATACATCATGTCCGACCTAAAACAGTGCCCGTTCGAGGTGACGCATCTGATCGAGGGCAAATCGTTCGCGATGCATATCGTCAAGTGCCAACGATCAACATCCGGACATCAAACTGGCCCGATGCCATCTCGACACGTCCCACCTGATGCGGGAGGAGGAGCTGCAGCAACACATGAAGACGTGCACAAGCCGTGGCCAGCTGGATGCGTACAAGTACAGCCTCACGACGGGGGCCGCTAGCCGTGTATCGAGTCTGCCCGATCCGGCCGACGATCTCATCATCAACACAACCGAACCGATCCTACGAAGAGGAGGAGGAGCCGGCGGAGGCGGCGGTCGTGGTCGTGGTGGTGGCCGCGGTGGCACTACCAGACACAACGGGTCGGACAGACGTTGCTGGACGATACCGAGTGTTGGGACGATTCGGACTGCAAGGCGTACGATCCGCTGGAAAGCTGCCGAGCGGAAAAGAACGAAAATGCAGCCTTTATCACACCGAAGATAAATCAGTTTGTGGAGCAGCGAACGGCAGCCGCTGTGCTGAAGAACGACAGCGGGACGAAGCGAGAACCAACCTCAGACG AAGAATTCGGTAGCAGTGCGCTGAACGAGCGCCAGAATGATCTTGAACAGTTTGGGCTGCGACGAAACGCTTCACACGGCGCGAATACTGGAAGAGTTGTCAGTGGCCGGTATGGCGAAATGAAGCAAGAACCAGGTAGCTCGGGCAGCAGGGAACGTGATGATAGACATTCGGGAGTGCGGTCCAACTCTCGCAGCGGGTATGAAGCGGGTGAACGGAACCCGTACAGTA ] [+] EMBL BM607721 [ ccgCGTAGTAGCGTCCCTTCGATACAGACAACTGTGATTGAAATTGGCTTTCGACGTGCATAAACTCAGCTCCATACATCATGTCCGACCTAAAACAGTGCCCGTTCGAGGTGACGCATCTGATCGAGGGCAAATCGTTCGCGATGCATATCGTCAAGTGCCAACGA CAACATCCGGACATCAAACTGGCCCGATGCCATCTCGACACGTCCCACCTGATGCGGGAGGAGGAGCTGCAGCAACACATGAAGACGTGCACAAGCCGTGGCCAGCTGGATGCGTACAAGTACAGCCTCACGACGGGGGCCGCTAGCCGTGTATCGAGTCTGCCCGATCCGGCCGACGATCTCATCATCAACACAACCGAACCGATCCTACGAAGAGGAGGAGGAGCCGGCGGAGGCGGCGGTCGTGGTCGTGGTGGTGGCCGCGGTGGCACTACCAG CACAAC GGTCGGACAGACGTTGCTGGACGATACCGAGTGTTGGGACGATTCGGACTGCAAGGCGTACGATCCGCTGGAAAGCTGCCGAGCGAAAAAGAACGAAAATGCAGCCTTTATCACACCGAAGATAAATCAGTTTGTGGAGCAGCGAACGGCAGCCGCTGTGCTGAAGAACGACAGCGGGACGAAGCGAGAACCAACCTCAGACG AAGAATTCGGTAGCAGTGCGCTGAACGAGCGCCAGA ] [+] EMBL BM614628 [ ccGCTTTCGACGTGCATAAACTCAGCTCCATACATCATGTCCGACCTAAAACAGTGCCCGTTCGAGGTGACGCATCTGATCGAGGGCAAATCGTTCGCAATGCATATCGTCAAGTGCCAACGA CAACATCCGGACATCAAACTGGCCCGATGCCATCTCGACACGTCCCACCTGATGCGGGAGGAGGAGCTGCAGCAACACATGAAGACGTGCACGAGCCGTGGCCAGCTGGATGCGTACAAGTACAGCCTCACGACGGGGGCCGCTAGCCGTGTATCGAGCCTGCCCGATCCGGCCGACGATCTCATCATCAACACAACCGAACCGATCATACGAAGAGGAGGAGGAGCCGGCGGCGGCGGCGGTCGTGGTCGTGGTGGTGGCCGCGGTGGCACTACCAG CACAAC GGTCGGACAGACGTTGCTGGACGATACCGAGTGTTGGGACGATTCGGACTGCAAGGCGTACGATCCGCTGGAAAGCTGCCGAGCGAAAAAGAACGAAAATGCAGCCTTTATCACACCGAAGATAAATCAGTTTGTGGAGCAGCGAACGGCAGCCGCTGTGCTGAAGAACGACAGCGGGACGAAGCGAGAACCAACCTCAGACGAAAAAATTCGGTAACAGTGCGCTGAACGAGCGCCAGAATG ] [+] EMBL CNS095B9 [ TCACACCGAAGATAAATCAGTTTGTGGAGCAGCGAACGGGTGCCGCTGTACTGAAGAACGACAGTGGGACGAAGCGAGAACCAACCTCGGACG AAGAATTCGGTAGCAGTGCACTGAACGAGCGCCAGAATGATCTTGAACAGTTCGGGCTGCGACGAAACGCTTCACACGGCGCGAATGCTGGAAGAGTTGTCAGTGGCCGGTATGGCGAAATGAAGCAAGAACCAGGTAGCTCGGGCAGTAGGGAACGTGATGATAGACATTCCGGAGTGCGGTCCAACTCTCGCAGCGGGTATGAAGCGGGTGAACGGAACCCGTACAGTAGACGATCGGATAGCGGTGGGTATCACGATCGAGAGCGGCACGGATACGATCGTCGTAGCGATGGATATTCGAGCAGAGACCGGTACGACAGTCGGCACCGTA GGATGGGGTATGATTCGGAATCTAGGAGCTCTCGAGGATACGGTCGAAA ] [-] EMBL CNS08QGK [ TAGCGATGGATATTCGAGCAGAGACCGGTACGACAGTCGGCACCGTAGGGAT GGGTATGATTCGGAATCTAGGAGCTCTCGAGGATACGGTCGAAATGACGATGATGGTTCCCGCAACCGGGGACATGGCAACGATAGGTACCAACCGTACGGAGGTAGCTCCTATCGATCGCACAGAACGAGTGATTCCACCGAACGAGGTAGTGACTATTCTGCGAAATATCCAAACCACGAACGTGACCATTAATTTTAACGAAAAATCTGAACTGAAATAATGCTGTTAGCGGTACGAATTAGCATAGAACAATGTACAATGAAGAAAATGAATGGAATTTTTTTCGCGAATAAACATGCATACGGA ] [-] EMBL CNS095BA [ CCGTAGGGAT GGGTATGATTCGGAATCTAGGAGCTCTCGAGGATACGGTCGAAATGACGATGATGGTTCCCGCAACCGAGGACATGGCAACGATAGGTACCAACCGTACGGAGGTAGCTCCTATCGATCGCACAGAACGAGTGATTCCACCGAACGAGGTAGTGACTATTCTGCGAAATATCCAAACCACGAACGTGACCATTAATTTTAACGAAAAATTTGAACTGAAATACCGCTGTTAGCGGTACGACTTAGCATAGAACAATGTACAATGAAGAAAATGAATGGAATTTTTTTCGCGAATAAACACGCA ACGGAAATTGCAAACGCTATCGTAG] consensusID : consensus_7936#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [AATCGCCCGAGGNTATACACTGCCAGCAAGTGTTCCAAGCGGCCTGTTTTCTGTAGTAGCTGTCCCTTCGATACAGACAACTGTGATTGAAATTGGCTTTCGACGTGCATAAACTCAGCTCCATACATCATGTCCGACCTAAAACAGTGCCCGTTCGAGGTGACGCATCTGATCGAGGTGCAAATCGTTCGCAATGCATATCGTCAAGTGCCAACGACAACATNCGGACATTCAAACTGGCTCGATGCCATCTCGACACGTCCCACCTTGGATGCCGGGAGGAGGAGCTGCAGCAACACATGAAGACGTGCACGANCCGTGGCCACTTGGATGCGTACAAGTACAGCTCACCGAACGGGGCCGCGTAGACCGTGTATCGAGCCTGCCGATCCTGGGCGACAGATCTCATCATCAACACAAACCGAACCGATCATACGAAGAGGAGGAGGAGCCGGCGGAGGCGGCGGTCGTGGGTCGGTAGGGTGGGTGGACCGGCGGATTGGGCACGTAACCCAGCACAACGAGGTCGCGACAAGAACGTTGCTGGGACNCGATACCGAGTGTTTGGGACGATTCCGGGACTGGCAAATGCGTACGATCCCGGCTGGGAAAGCTGCCGAGCGGAAAACGAA] [+] EMBL AL932917 [AATCGCCCGAGGNTATACACTGCCAGCAAGTGTTCCAAGCGGCCTGTTTTCTGTAGTAGCTGTCCCTTCGATACAGACAACTGTGATTGAAATTGGCTTTCGACGTGCATAAACTCAGCTCCATACATCATGTCCGACCTAAAACAGTGCCCGTTCGAGGTGACGCATCTGATCGAGGTGCAAATCGTTCGCAATGCATATCGTCAAGTGCCAACGACAACATNCGGACATTCAAACTGGCTCGATGCCATCTCGACACGTCCCACCTTGGATGCCGGGAGGAGGAGCTGCAGCAACACATGAAGACGTGCACGANCCGTGGCCACTTGGATGCGTACAAGTACAGCTCACCGAACGGGGCCGCGTAGACCGTGTATCGAGCCTGCCGATCCTGGGCGACAGATCTCATCATCAACACAAACCGAACCGATCATACGAAGAGGAGGAGGAGCCGGCGGAGGCGGCGGTCGTGGGTCGGTAGGGTGGGTGGACCGGCGGATTGGGCACGTAACCCAGCACAACGAGGTCGCGACAAGAACGTTGCTGGGACNCGATACCGAGTGTTTGGGACGATTCCGGGACTGGCAAATGCGTACGATCCCGGCTGGGAAAGCTGCCGAGCGGAAAACGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7936#0 --------------------------CAAGTGTGCCAAGCGGCCTGTTTTC-GTAGTAGC 33 consensus_7936#1 AATCGCCCGAGGNTATACACTGCCAGCAAGTGTTCCAAGCGGCCTGTTTTCTGTAGTAGC 60 ******* ***************** ******** consensus_7936#0 -GTCCCTTCGATACAGACAACTGTGATTGAAATTGGCTTTCGACGTGCATAAACTCAGCT 92 consensus_7936#1 TGTCCCTTCGATACAGACAACTGTGATTGAAATTGGCTTTCGACGTGCATAAACTCAGCT 120 *********************************************************** consensus_7936#0 CCATACATCATGTCCGACCTAAAACAGTGCCCGTTCGAGGTGACGCATCTGATCGAGG-G 151 consensus_7936#1 CCATACATCATGTCCGACCTAAAACAGTGCCCGTTCGAGGTGACGCATCTGATCGAGGTG 180 ********************************************************** * consensus_7936#0 CAAATCGTTCGCAATGCATATCGTCAAGTGCCAACGACAACATCCGGACAT-CAAACTGG 210 consensus_7936#1 CAAATCGTTCGCAATGCATATCGTCAAGTGCCAACGACAACATNCGGACATTCAAACTGG 240 ******************************************* ******* ******** consensus_7936#0 CCCGATGCCATCTCGACACGTCCCACCT--GATGC-GGGAGGAGGAGCTGCAGCAACACA 267 consensus_7936#1 CTCGATGCCATCTCGACACGTCCCACCTTGGATGCCGGGAGGAGGAGCTGCAGCAACACA 300 * ************************** ***** ************************ consensus_7936#0 TGAAGACGTGCACGAGCCGTGGCCAGCTGGATGCGTACAAGTACAGCCTCACGACGGGGG 327 consensus_7936#1 TGAAGACGTGCACGANCCGTGGCCACTTGGATGCGTACAAGTACAGCTCACCGAACGGGG 360 *************** ********* ******************** *** **** consensus_7936#0 CCGC-TAG-CCGTGTATCGAGCCTGCCCGATCCGGCCGAC-GATCTCATCATCAACACAA 384 consensus_7936#1 CCGCGTAGACCGTGTATCGAGCCTGCCGATCCTGGGCGACAGATCTCATCATCAACACAA 420 **** *** ****************** * ** **** ******************* consensus_7936#0 -CCGAACCGATCATACGAAGAGGAGGAGGAGCCGGCGGCGGCGGCGGTCGTGG-TCGTGG 442 consensus_7936#1 ACCGAACCGATCATACGAAGAGGAGGAGGAGCCGGCGGAGGCGGCGGTCGTGGGTCGGTA 480 ************************************* ************** *** consensus_7936#0 TGGTGGCCG---CGGTGG------CAC-TA--CCAGCACAACG--GTCG-GACAG--ACG 485 consensus_7936#1 GGGTGGGTGGACCGGCGGATTGGGCACGTAACCCAGCACAACGAGGTCGCGACAAGAACG 540 ***** * *** ** *** ** *********** **** **** *** consensus_7936#0 TTGCTGG---ACGATACCGAGTGTT-GGGACGATTC--GGACTGC--AAGGCGTACGATC 537 consensus_7936#1 TTGCTGGGACNCGATACCGAGTGTTTGGGACGATTCCGGGACTGGCAAATGCGTACGATC 600 ******* ************** ********** ****** ** ********** consensus_7936#0 C--GCTGG-AAAGCTGCCGAGCGAAAAAGAACGAAAATGCAGCCTTTATCACACCGAAGA 594 consensus_7936#1 CCGGCTGGGAAAGCTGCCGAGCGGAAAACGAA---------------------------- 632 * ***** ************** **** * consensus_7936#0 TAAATCAGTTTGTGGAGCAGCGAACGGCAGCCGCTGTGCTGAAGAACGACAGCGGGACGA 654 consensus_7936#1 ------------------------------------------------------------ consensus_7936#0 AGCGAGAACCAACCTCAGACGAAGAATTCGGTAGCAGTGCGCTGAACGAGCGCCAGAATG 714 consensus_7936#1 ------------------------------------------------------------ consensus_7936#0 ATCTTGAACAGTTTGGGCTGCGACGAAACGCTTCACACGGCGCGAATACTGGAAGAGTTG 774 consensus_7936#1 ------------------------------------------------------------ consensus_7936#0 TCAGTGGCCGGTATGGCGAAATGAAGCAAGAACCAGGTAGCTCGGGCAGCAGGGAACGTG 834 consensus_7936#1 ------------------------------------------------------------ consensus_7936#0 ATGATAGACATTCGGGAGTGCGGTCCAACTCTCGCAGCGGGTATGAAGCGGGTGAACGGA 894 consensus_7936#1 ------------------------------------------------------------ consensus_7936#0 ACCCGTACAGTAGACGATCGGATAGCGGTGGGTATCACGATCGAGAGCGGCACGGATACG 954 consensus_7936#1 ------------------------------------------------------------ consensus_7936#0 ATCGTCGTAGCGATGGATATTCGAGCAGAGACCGGTACGACAGTCGGCACCGTAGGATGG 1014 consensus_7936#1 ------------------------------------------------------------ consensus_7936#0 GTATGATTCGGAATCTAGGAGCTCTCGAGGATACGGTCGAAATGACGATGATGGTTCCCG 1074 consensus_7936#1 ------------------------------------------------------------ consensus_7936#0 CAACCGGGGACATGGCAACGATAGGTACCAACCGTACGGAGGTAGCTCCTATCGATCGCA 1134 consensus_7936#1 ------------------------------------------------------------ consensus_7936#0 CAGAACGAGTGATTCCACCGAACGAGGTAGTGACTATTCTGCGAAATATCCAAACCACGA 1194 consensus_7936#1 ------------------------------------------------------------ consensus_7936#0 ACGTGACCATTAATTTTAACGAAAAATCTGAACTGAAATAATGCTGTTAGCGGTACGAAT 1254 consensus_7936#1 ------------------------------------------------------------ consensus_7936#0 TAGCATAGAACAATGTACAATGAAGAAAATGAATGGAATTTTTTTCGCGAATAAACATGC 1314 consensus_7936#1 ------------------------------------------------------------ consensus_7936#0 ATACGGAAATTGCAAACGCTATCGTAG 1341 consensus_7936#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||