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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7940#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1427 fasta sequence
[AGAATCGCCCGAGTACGGGCTGATGCAGAAAAGCCTGTGGGATGGATTGACTGAGCGGGACAATGACGTGATAAAGTCTCTGCTACGCGAACCAGTATGGCAGATACCGGCCTCCAAGCAGGAAGATCTCACCGAGGTGGCCATCTACAATTACACGGAAAGCATCATTGCGCTCGGATATCTGCGGCTAGGGCATGTGCTTGTGAACGAGTTTTGGCAGCGCACGATTGGCGATTTCCGGCTGGATTCGGAACGTTTCCCCACGCTGGACGAAACCGTCAACATACTTCACCGGCGAGGCTTCCGCGTTTCGTTTATGATTCAGCCGTTCATCAGCACCGAAAGTAGCAACTTCCGGGAAGCGGTCGCCAAAAAGCTGCTTATATTTGAACGTGAATCGGAAAGAAGCATCCCGGCACTCACGCGTTACAAGAGCACTACGAGCGCCGGTGTGTTGGACGTAACCAATAATGCCTCCATACCGTGGCTGGCCGAGCAGCTGAAAAAGATATCGGAAACGGTAGAGATAGACTCCTATTTTGTGGACTTTGGCACTGCGTTCAACATTCCACGCTACTATCAATGCTCCCAGACGCTTGTCAATCCGGACGAGTACAAAAACTACTTCATGGAGCGCTTTGAAGGCACGCTGAGCATCTTTGGTGTGTCGAGTGCCATATCCGTGCCACGTCCGCCAGCGTTTCTTAGTCTACCGCCAGTGAATAGCTCGTGGAGTGGACTGCAAAGCATAATTCCTACGATGCTTTCCTACGGCATTATAGGCTTTCCGTTCTTAATGCCCGGACCCGTCGGTGGAGACTTTGTGCTGCCTACGCAGCAATTAAAGAAAATGTATTCATACTACTCCTTCGAGCTGCCACCACTGCCTGATAAGGAGCTGTACATCCGATGGCTTCAGCTTGCCACGTTTCTGCCCGTGTTGCGTTTCACTCACCTACCGTCGGAGTATAGGGATGAAACGGTAACGGTAATTGCGAAAGAATTGGCTGACATTCGGCAGAGAGTGCTTCCCTTGCTGGAGCGTTTTTCGAGCATCGCTATGGACGAAGGATTGCCGATCATCCGCCCGCTTTGGATGCTGGATTCGACCGATGTGAACTGTTTTTCGATCGACGATGAATTTTCCATTGGCGATGGAATGATTGTGGCTCCCGTGCTCAAAAAAGGAGAAACGGTTCGTGAAGTTTATTTACCGCAGGGCGTTTGGAAGGATGGCATCGATGAGTCATTGCGGAAGGGAAGCCGATGGATACACAACTATCACGTGCCGCAGAATAAAGTAGCGTATTTCATAAAAATGCCCGATAATACGCGTTTCTAGCTGCAGCGCTAGCCTACATTTCTCCTCTGTCCAGAGCACGCAAAAGGCAGATAAATCAGAAGTATACTATTTATTCTATTAAATA]
[+] EMBL AL932641 [AGAATCGCCCGAGTACGGGCTGATGCAGAAAAGCCTGTGGGATGGATTGACTGAGCGGGACAATGACGTGATAAAGTCTCTGCTACGCGAACCAGTATGGCAGATACCGGCCTCCAAGCAGGAAGATCTCACCGAGGTGGCCATCTACAATTACACGGAAAGCATCATTGCGCTCGGATATCTGCGGCTAGGGCATGTGCTTGTGAACGAGTTTTGGCAGCGCACGATTGGCGATTTCCGGCTGGATTCGGAACGTTTCCCCACGCTGGACGAAACCGTCAACATACTTCACCGGCGAGGCTTCCGCGTTTCGTTTATGATTCAGCCGTTCATCAGC ]
[+] EMBL BX625915 [ CAGGAAGATCTCACCGAGGTGGCCATCTACAATTACACGGAAAGCATCATTGCGCTCGGATATCTGCGGCTAGGGCATGTGCTTGTGAACGAGTTTTGGCAGCGCACGATTGGCGATTTCCGGCTGGATTCGGAACGTTTCCCCACGCTGGACGAAACCGTCAACATACTTCACCGGCGAGGCTTCCGCGTTTCGTTTATGATTCAACCGTTCATCAGCACCGAAAGTAGCAACTTCCGGGAAGCGGTCGCCAAAAAGCTGCTTATATTTGAACGTGAATCGGAAAGAAGCATCCCGGCACTCACGCGTTACAAGAGCACTACGAGCGCCGGTGTGTTGGACGTAACCAATAATGCCTCCATACCGTGGCTGGCCGAGCAGCTGAAAAAGATATCGGAAACGGTAGAGATAGACTCCTATTTTGTGGACTTTGGCACTGCGTTCAACATTCCACGCTACTATCAATGCTCCCAGACGCTTGTCAATCCGGACGAGTACAAAAACTACTTCATGGAGCGCTTTGAAGGCACGCTGAGCATCTTTGGTGTGTCGAGTGCCATATCCGTGCCACGTCCGCCAGCGTTTCTTAGTCTACCGCCAGTGAATAGCTCGTGGAGTGGACTGCAAAGCATAATTCCTACGATGCTTTCCTACGGCATTATAGGCTTTCCGTTCTTAATGCCCGGCCCCGTCGGTGGAGACTTTGTGCTGCCTACGCAGCAATTAAAGAAAATGTATTCATACTACTCCTTCGAGCTGCCACCACTGNCTGATAAGGAGCTGTACATCCGATGGCTTCAGCTTGNCACGTTTCTGCCCGNGTTGCGNTTCACTCACCTACCGTCNGA ]
[+] EMBL BX615923 [ CTGAAAAAGA ATCGGAAACGGTAGAGATAGACTCCTATTTTGTGGACTTTGGCACTGCGTTCAACATTCCACGCTACTATCAATGCTCCCAGACGCTTGTCAATCCGGACGAGTACAAAAACTACTTCATGGAGCGCTTTGAAGGCACGCTGAGCATCTTTGGTGTGTCGAGTGCCATATCCGTGCCACGTCCGCCAGCGTTTCTTAGTCTACCGCCAGTGAATAGCTCGTGGAGTGGACTGCAAAGCATAATTCCTACGATGCTTTCCTACGGCATTATAGACTTTCCGTTCTTAATGCCCGGACCCGTCGGTGGAGACTTTGTGCTGCCTACGCAGCAATTAAAGAAAATGTATTCATACTACTCCTTCGAGCTGCCACCACTGCCTGATAAGGAGCTGTACATCCGATGGCTTCAGCTTGCCACGTTTCTGCCCGTGTTGCGTTTCACTCACCTACCGTCGGAGTATAGGGATGAAACGGTAACGGTAATTGCGAAAGAATTGGCTGACATTCGGCAGATAGTGCTTCCCTTGCTGGAGCGTTTTTCGAGCATCGCTATGGACGAAGGATTGCCGATCATCCGCCCGCTTTGGATGCTGGATTCGACCGATGTGAACTGTTTTTCGATCGACGATGAATTTTCCATTGGCG ]
[+] EMBL BX610962 [ CTACTATCAATGCTCCCAGACGCTTGTCAATCCGGACGAGTACAAAAACTACTTCATGGAGCGCTTTGAAGGCACGCTGAGCATCTTTGGTGTGTCGAGTGCCATATCCGTGCCACGTCCGCCAGCGTTTCTTAGTCTACCGCCAGTGAATAGCTCGTGGAGTGGACTGCAAAGCATAATTCCTACGATGCTTTCCTACGGCATTATAGGCTTTCCGTTCTTAATGCCCGGACCCGTCGGTGGAGACTTTGTGCTGCCTACGCAGCAATTAAAGAAAATGTATTCATACTACTCCTTCGAGCTGCCACCACTGCCTGATAAGGAGCTGTACATCCGATGGCTTCAGCTTGCCACGTTTCTGCCCGTGTTGCGTTTCACTCACCTACCGTCGGAGTATAGGGATGAAACGGTAACGGTAATTGCGAAAGAATTGGCTGACATTCGGCAGAGAGTGCTTCCCTTGCTGGAGCGTTTTTCGAGCATCGCTATGGACGAAGGATTGCCGATCATCCGCCCGCTTTGGATGCTGGATTCGACCGATGTGAACTGTTTTTCGATCGACGATGAATTTTCCATTGGCGATGGAATGATTGTGGC ]
[+] EMBL BX618815 [ AGTGCCATATCCGTGCCACGTCCGCCAGCGTTTCTTAGTCTACCGCCAGTGAATAGCTCGTGGAGTGGACTGCAAAGCATAATTCCTACGATGCTTTCCTACGGCATTATAGGGTTTCCGTTCTTAATGCCCGGACCCGTCGGTGGAGACTTTGTGCTGCCTACGCAGCAATTAAAGAAAATGTATTCATACTACTCCTTCGAGCTGCCACCACTGCCTGATAAGGAGCTGTACATCCGATGGCTTCAGCTTGCCACGTTTCTGCCCGTGTTGCGTTTCACTCACCTACCGTCGGAGTATAGGGATGAAACGGTAACGGTAATTGCGAAAGAATTGGCTGACATTCGGCAGAGAGTGCTTCCCTTGCTGGAGCGTTTTTCGAGCATCGCTATGGACGAAGGATTGCCGATCATCCGCCCGCTTTGGATGCTGGATTCGACCGATGTGAACTGTTTTTCGATCGACGATGAATTTTCCATTGGCGATGGAATGATTGTGGCTCCCGTGCTCAAAAAAGGAGAAACGGTTCGTGAAGTTTATTTACCGCAGGGCGTTTGGAAGGATGGCATCGATGAGTCATTGCGGAAGGGAAGCCGATGGATACACAACTATCACGTGCCGCAGAATAAAGTAGCGTATTTCATAAAAATGCCCGATAATACGCGTTTCTAGCTGCAGCGCTAGCCTACATTTCTCCTCTGTCCAGAGCACGCAAAAGGCAGATAAATCAGAAGTATACTATTTATTCTATTAAATA]
[+] EMBL BX608693 [ CCATATCCGTGCCACGTCCGCCAGCGTCTCTTAGTCTACCGCCAGTGAATAGCTCGTGGAGTGGACTGCAAAGCATAATTCCTACGATGCTTTCCTACGGCATTATAGGCTTTCCGTTCTTAATGCCCGGACCCGTCGGTGGAGACTTTGTGCTGCCTACGCAGCAATTAAAGAAAATGTATTCATACTACTCCTTCGAGCTGCCACCACTGCCTGATAAGGAGCTGTACATCCGATGGCTTCAGCTTGCCACGTTTCTGCCCGTGTTGCGTTTCACTCACCTACCGTCGGAGTATAGGGATGAAACGGTAACGGTAATTGCGAAAGAATTGGCTGACATTCGGCAGAGAGTGCTTCCCTTGCTGGAGCGTTTTTCGAGCATCGCTATGGACGAAGGATTGCCGATCATCCGCCCGCTTTGGATGCTGGATTCGACCGATGTGAACTGTTTTTCGATCGACGATGAATTTTCCATTGGCGATGGAATGATTGTGGCTCCCGTGCTCAAAAAAGGAGAAACGGTTCGTGAAGTTTATTTACCGCAGGGCGTTTGGAAGGATGGCATCGATGAGTCATTGCGGAAGGGAAGCCGATGGATACACAACTATCACGTGCCGCAGAATAAAGTAG ]
[+] EMBL BX612502 [ GCATTATAGGCTTTCCGTTCTTAAGGCCCGGACCCGTCGGTGGAGACTTTGTGCTGCCTACGCAGCAATTAAAGAAAAGGTATTCATACTACTCCTTCGAGCTGCCACCACGGCCTGATAAGGA ]
consensusID : consensus_7940#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence
[ATNGCCCGAGNTTACAATAATGCTCCATACCGTGGCTGGCCGAGCAGCTGAAAAAGATATCGGAAACGGTAGAGATAGACTCCTATTTTGTGGACTTTGGCACTGCGTTCAACATTCCACGCTACTATCAATGCTCCCAGACGCTTGTCAATCCGGACGAGTACAAAAACTACTTCATGGAGCGCTTTGAAGGCACGCTGAGCATCTTTGGTGTGTCGAGTGCCATATCCGTGCCACGTCCGCCAGCGTTTCTTAGTCTACCGCCAGTGAATAGCTCGTGGAGTGGACTGCAAAGCATAATTCCTACGATGCTTTCCTACGGCATTATAGGCTTTCCGTTCTTAATGCCCGGACCCGTCGGTGGAGACTTTGTGCTGCCTACGCAGCAACTTAANNGAAAATGTATTCATACTACTCCTTCGAGCTGCCACCACTGCCTGANTNACGGAGCTGTACATCCGACTGGCTTCAGCTTGCCACGATACACTGACCCGTGATNNGCCGTACATCAACTCCACCCCTAACCCGATCCGCNCCACTTACTTACGNGACTTGACAAACGGGCTACAACCGCGTNNCTCTGCCGCACACACCCANTTTGGNCTTGGACCAATTCCGGNGCCAAGAAGNAAAGTTGGCTT]
[+] EMBL AL693342 [ATNGCCCGAGNTTACAATAATGCTCCATACCGTGGCTGGCCGAGCAGCTGAAAAAGATATCGGAAACGGTAGAGATAGACTCCTATTTTGTGGACTTTGGCACTGCGTTCAACATTCCACGCTACTATCAATGCTCCCAGACGCTTGTCAATCCGGACGAGTACAAAAACTACTTCATGGAGCGCTTTGAAGGCACGCTGAGCATCTTTGGTGTGTCGAGTGCCATATCCGTGCCACGTCCGCCAGCGTTTCTTAGTCTACCGCCAGTGAATAGCTCGTGGAGTGGACTGCAAAGCATAATTCCTACGATGCTTTCCTACGGCATTATAGGCTTTCCGTTCTTAATGCCCGGACCCGTCGGTGGAGACTTTGTGCTGCCTACGCAGCAACTTAANNGAAAATGTATTCATACTACTCCTTCGAGCTGCCACCACTGCCTGANTNACGGAGCTGTACATCCGACTGGCTTCAGCTTGCCACGATACACTGACCCGTGATNNGCCGTACATCAACTCCACCCCTAACCCGATCCGCNCCACTTACTTACGNGACTTGACAAACGGGCTACAACCGCGTNNCTCTGCCGCACACACCCANTTTGGNCTTGGACCAATTCCGGNGCCAAGAAGNAAAGTTGGCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7940#0 AGAATCGCCCGAGTACGGGCTGATGCAGAAAAGCCTGTGGGATGGATTGACTGAGCGGGA 60
consensus_7940#1 ------------------------------------------------------------
consensus_7940#0 CAATGACGTGATAAAGTCTCTGCTACGCGAACCAGTATGGCAGATACCGGCCTCCAAGCA 120
consensus_7940#1 ------------------------------------------------------------
consensus_7940#0 GGAAGATCTCACCGAGGTGGCCATCTACAATTACACGGAAAGCATCATTGCGCTCGGATA 180
consensus_7940#1 ------------------------------------------------------------
consensus_7940#0 TCTGCGGCTAGGGCATGTGCTTGTGAACGAGTTTTGGCAGCGCACGATTGGCGATTTCCG 240
consensus_7940#1 ------------------------------------------------------------
consensus_7940#0 GCTGGATTCGGAACGTTTCCCCACGCTGGACGAAACCGTCAACATACTTCACCGGCGAGG 300
consensus_7940#1 ------------------------------------------------------------
consensus_7940#0 CTTCCGCGTTTCGTTTATGATTCAGCCGTTCATCAGCACCGAAAGTAGCAACTTCCGGGA 360
consensus_7940#1 ------------------------------------------------------------
consensus_7940#0 AGCGGTCGCCAAAAAGCTGCTTATATTTGAACGTGAATCGGAAAGAAGCATCCCGGCACT 420
consensus_7940#1 ------------------------------------------------------------
consensus_7940#0 CACGCGTTACAAGAGCACTACGAGCGCCGGTGTGTTGGACGTAACCAATAATGCCTCCAT 480
consensus_7940#1 -----------------------------ATNGCCCGAGNTTA--CAATAATGC-TCCAT 28
* * ** ********* *****
consensus_7940#0 ACCGTGGCTGGCCGAGCAGCTGAAAAAGATATCGGAAACGGTAGAGATAGACTCCTATTT 540
consensus_7940#1 ACCGTGGCTGGCCGAGCAGCTGAAAAAGATATCGGAAACGGTAGAGATAGACTCCTATTT 88
************************************************************
consensus_7940#0 TGTGGACTTTGGCACTGCGTTCAACATTCCACGCTACTATCAATGCTCCCAGACGCTTGT 600
consensus_7940#1 TGTGGACTTTGGCACTGCGTTCAACATTCCACGCTACTATCAATGCTCCCAGACGCTTGT 148
************************************************************
consensus_7940#0 CAATCCGGACGAGTACAAAAACTACTTCATGGAGCGCTTTGAAGGCACGCTGAGCATCTT 660
consensus_7940#1 CAATCCGGACGAGTACAAAAACTACTTCATGGAGCGCTTTGAAGGCACGCTGAGCATCTT 208
************************************************************
consensus_7940#0 TGGTGTGTCGAGTGCCATATCCGTGCCACGTCCGCCAGCGTTTCTTAGTCTACCGCCAGT 720
consensus_7940#1 TGGTGTGTCGAGTGCCATATCCGTGCCACGTCCGCCAGCGTTTCTTAGTCTACCGCCAGT 268
************************************************************
consensus_7940#0 GAATAGCTCGTGGAGTGGACTGCAAAGCATAATTCCTACGATGCTTTCCTACGGCATTAT 780
consensus_7940#1 GAATAGCTCGTGGAGTGGACTGCAAAGCATAATTCCTACGATGCTTTCCTACGGCATTAT 328
************************************************************
consensus_7940#0 AGGCTTTCCGTTCTTAATGCCCGGACCCGTCGGTGGAGACTTTGTGCTGCCTACGCAGCA 840
consensus_7940#1 AGGCTTTCCGTTCTTAATGCCCGGACCCGTCGGTGGAGACTTTGTGCTGCCTACGCAGCA 388
************************************************************
consensus_7940#0 ATT--AAAGAAAATGTATTCATACTACTCCTTCGAGCTGCCACCACTGCCTGATAA--GG 896
consensus_7940#1 ACTTAANNGAAAATGTATTCATACTACTCCTTCGAGCTGCCACCACTGCCTGANTNACGG 448
* * * ********************************************* **
consensus_7940#0 AGCTGTACATCCGA-TGGCTTCAGCTTGCCACGTTTCTGCCCGTGTTGCGTTTCACTCAC 955
consensus_7940#1 AGCTGTACATCCGACTGGCTTCAGCTTGCCACGATACA--CTGACCCGTGATNNGC-CGT 505
************** ****************** * * * * * * * * *
consensus_7940#0 CTACCGTCGGAGTATAGGGATGAAACGGTAACGGTAATTGCGAAAGAATTGGCTGACATT 1015
consensus_7940#1 ACATCAACTCCACCCCTAACCCGATCCGCNCCACTTACT-TACGNGACTTGACAAACG-- 562
* * * * * * * * * * ** *** * **
consensus_7940#0 CGGCAGAGAGTGCTTCCCTTGCTGGAGCGTTTTTCGAGCATCGCTATGGACGAAGGATTG 1075
consensus_7940#1 -GGCTACAACCGCGTNNCT--CTGCCGCACACACCCANTTTGGNCTTGGACCAA----TT 615
*** * ** * ** *** ** * * * * ***** ** *
consensus_7940#0 CCGATCATCCGCCCGCTTTGGATGCTGGATTCGACCGATGTGAACTGTTTTTCGATCGAC 1135
consensus_7940#1 CCGGN-----GCCAAGAAGNAAAGTTGGCTT----------------------------- 641
*** *** * * *** **
consensus_7940#0 GATGAATTTTCCATTGGCGATGGAATGATTGTGGCTCCCGTGCTCAAAAAAGGAGAAACG 1195
consensus_7940#1 ------------------------------------------------------------
consensus_7940#0 GTTCGTGAAGTTTATTTACCGCAGGGCGTTTGGAAGGATGGCATCGATGAGTCATTGCGG 1255
consensus_7940#1 ------------------------------------------------------------
consensus_7940#0 AAGGGAAGCCGATGGATACACAACTATCACGTGCCGCAGAATAAAGTAGCGTATTTCATA 1315
consensus_7940#1 ------------------------------------------------------------
consensus_7940#0 AAAATGCCCGATAATACGCGTTTCTAGCTGCAGCGCTAGCCTACATTTCTCCTCTGTCCA 1375
consensus_7940#1 ------------------------------------------------------------
consensus_7940#0 GAGCACGCAAAAGGCAGATAAATCAGAAGTATACTATTTATTCTATTAAATA 1427
consensus_7940#1 ----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||