cluster # 7965

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Anopheles gambiae
cluster # 7965 cluster # 7965 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7965#0 length = 674 sequences # 6

consensus_7965#1 length = 608 sequences # 1
consensus_7965#2 length = 498 sequences # 1

consensusID : consensus_7965#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 674
fasta sequence

                              [GGTTTTCTGTCTAAAAGCGCGGAATTCCTCGAGCACTGTTGGCCTACTGGATAAAACCACCATTTGCAGATCGGCCCGGTTCATTCGTGTGCTGCATCGTTCGGACCGTGTGCGTGACCGTGTGTTGGGAGACAAGTACTGACCGGAAGGCTGAATTCGCATCGATAATGTCGCTAGAAACTGTCATTGAGAAGGTGAAGGCTCGCGTGGCTGCCGTCGACCCGAACGGACCCCGGAAGGTGCTGGGAGTGTTCCAGTTCAACATCAAAACCGCATCCGGTGTCGAGCAATACGTGATCGATCTGAAGCAGCTGAAGGTGGAGAAGGGTACGACTGCCACTCCGGACGTGACCGTCACCCTGACCGTGGAGGACCTGATCGCGGTCAGTGCCCGCACACTGTCCGTTGGCGATGCGCTAACGCAGGGCAAGCTGGAGATCCAGGGCGATGCCACGCTAGCCGCCAAGCTGGCCGAAGTTATCTAAACGTCCCCGGGGGTCATAATGCACCTCAGCCTTCACGATGTGATTGTGATTAAGTGCCGCCATCCCCTTCCGTTGTCCGACTGTTTTTTTGCTTTTCGTTCGATATGATACTTTTTTTTAAATAAACAGAACACACTTTCAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGCAGTTCCCCTC]

[-] EMBL CNS08SLW             [GGTTTTCTGTCTAAAAGCGCGGAATTCCTCGAGCACTGTTGGCCTACTGGATAAAACCACCATTTGCAGATCGGCCCGGTTCATTCGTGTGCTGCATCGTTCGGACCGTGTGCGTGACCGTGTGTTGGGAGACAAGTACTGACCGGAAGGCTGAATTCGCATCGATAATGTCGCTAGAAACTGTCATTGAGAAGGTGAAGGCTCGCGTGGCTGCCGTCGACCCGAACGGACCCCGGAAGGTGCTGGGAGTGTTCCAGTTCAACATCAAAACCGCATCCGGTGTCGAGCAATACGTGATCGATCTGAAGCAGCTGAAGGTGGAGAAGGGTACGACTGCCACTCCGGACGTGACCGCCACCCTGACCGTGGAGGACCTGATCGCGGTCAGTGCCCGCACACTGTCCGTTGGCGATGCG TAACGCAGGGCAAGCTGGAGATCCAGGGCGATGCCACGCTAGCCGCCAAGCTGGCCGAAGTTATCTAAACGTCCCCGGGGGTCATAATGCACCTCAGCCTTCACGATGTGATTGTGATTAAGTGCCGCCATCCCCTTCCGTTGTCCGACTGTTTTTTTGCTTTTCGTTCGATATGATACTTTTTTTTAAATAAA                                                               ]
[+] EMBL CNS08SLV             [                                                          ACCATTTGCAGATCGGCCCGGTTCATTCGTGTGCTGCATCGTTCGGACCGTGTGCGTGACCGTGTGTTGGGAGACAAGTACTGACCGGAAGGCTGAATTCGCATCGATAATGTCGCTAGAAACTGTCATTGAGAAGGTGAAGGCTCGCGTGGCTGCCGTCGACCCGAACGGACCCCGGAAGGTGCTGGGAGTGTTCCAGTTCAACATCAAAACCGCATCCGGTGTCGAGCAATACGTGATCGATCTGAAGCAGCTGAAGGTGGAGAAGGGTACGACTGCCACTCCGGACGTGACCGCCACCCTGACCGTGGAGGACCTGATCGCGGTCAGTGCCCGCACACTGTCCGTTGGCGATGCGCTAACGCAGGGCAAGCTGGAGATCCAGGGCGATGCCACGCTAGCCGCCAAGCTGGCCGAAGTTATCTAAACGTCCCCGGGGGTCATAATGCACCTCAGCCTTCACGATGTGATTGTGATTAAGTGCCGCCATCCCCTTCCGTTGTCCGACTGTTTTTTTGCTTTTCGTTCGATATGATACTTTTTTTTAAATAAACAGAACACACTTTCAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGCAGTTCCCCTC]
[+] EMBL BM598741             [                                                                                              ccgCGTTCGGACCGTGTGCGTGACCGTGTGTTGGGAGACAAGTACTGACCGGAAGGCTGAATTCGCATCGATAATGTCGCTAGAAACTGTCATTGAGAAGGTGAAGGCTCGCGTTGCTGCCGTCGACCCGAACGGACCCCGGAAGGTGCTGGGAGTGTTCCAGTTCAACATCAAAACCGCATCCGGTGTCGAGCAATACGTGATCGATCTGAAGCAGCTGAAGGTGGAGAAGGGTACGACTGCCACTCCGGACGTGACCGTCACCCTGACCGTGGAGGACCTGATCGCGGTCAGTGCCCGCACACTGTCCGTTGGCGATGCGCTAACGCAGGGCAAGCTGGAGATCCAGGGCGATGCCACGCTAGCCGCCAAGCTGGCCGAAGTTATCTAAACGTCCCCGGGGGTCATAATGCACCTCAGCCTTCACGATGTGATTGTGATTAAGTGCCGTCATCCCCTTCCATTGTCCGACTGTTTTTTTGCTTTTCGTTCGATATGATACTTTTTTTTAAATAAACAGAACACACTTTCAt                                               ]
[+] EMBL BM596176             [                                                                                              ccgCGTTCGGACCGTGTGCGTGACCGTGTGTTGGGAGACAAGTACTGACCGGAAGGCTGAATTCGCATCAATAATGTCGCTAGAAACTGTCATTGAGAAGGTGAAGGCTCGCGTGGCTGCCGTCGACCCGAACGGACCCCGGAAGGTGCTGGGAGTGTTCCAGTTCAACATCAAAACCGCATCCGGTGTCGAGCAATACGTGATCGATCTGAAGCAGCTGAAGGTGGAGAAGGGTACGACTGCCACTCCGGACGTGACCGTCACCCTGACCGTGGAGGACCTGATCGCGGTCAGTGCCCGCACACTGTCCGTTGGCGATGCGCTAACGCAGGGCAAGCTGGAGATCCAGGGCGATGCCACGCTAGCCGCCAAGCTGGCCGAAGTTATCTAAACGTCCCCGGCGGTCATAATGCACCTCAGTCTTCTCGATGTGATTGTGATTAAGTGCCGCCATCCCCTTCCGTTGTCCGGCTGTTTTTTTGCTTTTCGTTCGATATGATACTTTTTTTTAAATAAACAGAACACACTTTC                                                 ]
[+] EMBL CNS08UY9             [                                                                                                 CGTTCGGACCGTGTGCGTGACCGTGTGTTGGGAGACAAGTACTGACCGGAAGGCTGAATTCGCATCGATAATGTCGCTAGAAACTGTCATTGAGAAGGTGAAGGCTCGCGTGGCTGCCGTCGACCCGAACGGACCCCGGAAGGTGCTGGGAGTGTTCCAGTTCAACATCAAAACCGCATCCGGTGTCGAGCAATACGTGATCGATCTGAAGCAGCTGAAGGTGGAGAAGGGTACGACTGCCACTCC                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CNS08UYA             [                                                                                                                                                                                                  GTGAAGGCTCGCGTTGCTGCCGTCGACCCGAACGGACCCCGGAAGGTGCTGGGAGTGTTCCAGTTTAACATCAAAACCGCATCCGGTGTCGAGCAATACGTGATCGATCTGAAGCAGCTGAAGGTGGAGAAGGGTACAACTGCCACTCCGGACGTGACCGTCACCCTGACCGTGGAGGACCTGATCGCGGTCAGTGCCCGCACACTGTCCGTTGGCGATGCG TAACGCAGGGCAAGCTGGAGATCCAGGGCGATGCCACGCTAGCCGCCAAGCTGGCCGAAGTTATCTAAACGTCCCCGGGGGTCATAATGCACCTCAGCCTTCACGATGTGATTGTGATTAAGTGCCGCCATCCCCTTCCGTTGTCCGACTGTTTTTTTGCTTTTCGTTCGATATGATACTTTTTTTTA                                                                     ]




>consensus_7965#0
GGTTTTCTGTCTAAAAGCGCGGAATTCCTCGAGCACTGTTGGCCTACTGGATAAAACCAC
CATTTGCAGATCGGCCCGGTTCATTCGTGTGCTGCATCGTTCGGACCGTGTGCGTGACCG
TGTGTTGGGAGACAAGTACTGACCGGAAGGCTGAATTCGCATCGATAATGTCGCTAGAAA
CTGTCATTGAGAAGGTGAAGGCTCGCGTGGCTGCCGTCGACCCGAACGGACCCCGGAAGG
TGCTGGGAGTGTTCCAGTTCAACATCAAAACCGCATCCGGTGTCGAGCAATACGTGATCG
ATCTGAAGCAGCTGAAGGTGGAGAAGGGTACGACTGCCACTCCGGACGTGACCGTCACCC
TGACCGTGGAGGACCTGATCGCGGTCAGTGCCCGCACACTGTCCGTTGGCGATGCGCTAA
CGCAGGGCAAGCTGGAGATCCAGGGCGATGCCACGCTAGCCGCCAAGCTGGCCGAAGTTA
TCTAAACGTCCCCGGGGGTCATAATGCACCTCAGCCTTCACGATGTGATTGTGATTAAGT
GCCGCCATCCCCTTCCGTTGTCCGACTGTTTTTTTGCTTTTCGTTCGATATGATACTTTT
TTTTAAATAAACAGAACACACTTTCAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAG
CTGCAGTTCCCCTC

consensusID : consensus_7965#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence

                              [CCGGCAGTAGCAGCAGCAGCAAGTGCAAGTGAACCTTTGGTGTCCCACCGTCACCGATGTGTTGGAACAGCTGCTATAAAACCACCATTTGCAGATCGACCCGGTTCATTCGTGTGCTGCATCGTTCGGACCGTGTGCGTGACCGTGTGTTGGGAGACAAGTACTGACCGGAAGGCTGAATTCGCATCGATAATGTCGCTAGAAACTGTCATTGAGAAGGTGAAGGCTCGCGTGGCTGCCGTCGACCCGAACGGACCCCGGAAGGTGCTGGGAGTGTTCCAGTTTAACATCAAAACCGCATCCGGTGTCGAGCAATACGTGATCGATCTGAAGCAGCTGAAGGTGGAGAAGGGTACGACTGCCACTCCGGACGTGACCGTCACCCTGACCGTGGAGGACCTGATCGCGGTCAGTGCCCGCACACTGTCCGTTGGTGATGCGCTAACGCAGGGCAAGCTGGAGATCCAGGGCGATGCCACGCTAGCCGCCAAGCTGGCCGAAGTTATCTAAACGTCCCCGGCGGTCATAATGCACCTCAGCCTTCACGATGTGATTTGTGATTAAGTGCCGTCATCCCCTTCCGTTGTTCGACTGATTTTTTTGCTATT]

[+] EMBL BM601801             [CCGGCAGTAGCAGCAGCAGCAAGTGCAAGTGAACCTTTGGTGTCCCACCGTCACCGATGTGTTGGAACAGCTGCTATAAAACCACCATTTGCAGATCGACCCGGTTCATTCGTGTGCTGCATCGTTCGGACCGTGTGCGTGACCGTGTGTTGGGAGACAAGTACTGACCGGAAGGCTGAATTCGCATCGATAATGTCGCTAGAAACTGTCATTGAGAAGGTGAAGGCTCGCGTGGCTGCCGTCGACCCGAACGGACCCCGGAAGGTGCTGGGAGTGTTCCAGTTTAACATCAAAACCGCATCCGGTGTCGAGCAATACGTGATCGATCTGAAGCAGCTGAAGGTGGAGAAGGGTACGACTGCCACTCCGGACGTGACCGTCACCCTGACCGTGGAGGACCTGATCGCGGTCAGTGCCCGCACACTGTCCGTTGGTGATGCGCTAACGCAGGGCAAGCTGGAGATCCAGGGCGATGCCACGCTAGCCGCCAAGCTGGCCGAAGTTATCTAAACGTCCCCGGCGGTCATAATGCACCTCAGCCTTCACGATGTGATTTGTGATTAAGTGCCGTCATCCCCTTCCGTTGTTCGACTGATTTTTTTGCTATT]




>consensus_7965#1
CCGGCAGTAGCAGCAGCAGCAAGTGCAAGTGAACCTTTGGTGTCCCACCGTCACCGATGT
GTTGGAACAGCTGCTATAAAACCACCATTTGCAGATCGACCCGGTTCATTCGTGTGCTGC
ATCGTTCGGACCGTGTGCGTGACCGTGTGTTGGGAGACAAGTACTGACCGGAAGGCTGAA
TTCGCATCGATAATGTCGCTAGAAACTGTCATTGAGAAGGTGAAGGCTCGCGTGGCTGCC
GTCGACCCGAACGGACCCCGGAAGGTGCTGGGAGTGTTCCAGTTTAACATCAAAACCGCA
TCCGGTGTCGAGCAATACGTGATCGATCTGAAGCAGCTGAAGGTGGAGAAGGGTACGACT
GCCACTCCGGACGTGACCGTCACCCTGACCGTGGAGGACCTGATCGCGGTCAGTGCCCGC
ACACTGTCCGTTGGTGATGCGCTAACGCAGGGCAAGCTGGAGATCCAGGGCGATGCCACG
CTAGCCGCCAAGCTGGCCGAAGTTATCTAAACGTCCCCGGCGGTCATAATGCACCTCAGC
CTTCACGATGTGATTTGTGATTAAGTGCCGTCATCCCCTTCCGTTGTTCGACTGATTTTT
TTGCTATT

consensusID : consensus_7965#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 498
fasta sequence

                              [CCGCCCACGCGTCCGGTTCGGACCGTGTGCGTGACCGTGTGTTGGGAGACAAGTACTGACCGGAAGGCTGAATTCGCATCGATAATGTCGCTAGAAACTGTCATTGAGAAGGTGAAGGCTCGCGTTGCTGCCGTCGACCCGAACGGACCCCGGAAGGTGCTGGGAGTGTTCCAGTTCAACATCAAAACCGCATCCGGTGTCGAGCAATACGTGATCGATCTGAAGCAGCTGAAGGTGGAGAAGGGTACGACTGCCACTCCGGACGTGACCGTCACCCTGACCGTGGAGGACCTGATCGCGGTCAGTGCCCGCACACTGTCCGTTGGCGATGCGCTAACGCAGGGCAAGCTGGAGATCCAGGGCGATGCCACGCTAGCCGCCAAGCTGGCCGAAGTTATCTAAACGTCCCCGGGGGTCATAATGCACCTCAGCCTTCACGATGTGATTGTGATTAAGTGCCGTCATCCCCTTCCATTGTCCGACTGTTTTTTTGCTTTT]

[+] EMBL BM607659             [CCGCCCACGCGTCCGGTTCGGACCGTGTGCGTGACCGTGTGTTGGGAGACAAGTACTGACCGGAAGGCTGAATTCGCATCGATAATGTCGCTAGAAACTGTCATTGAGAAGGTGAAGGCTCGCGTTGCTGCCGTCGACCCGAACGGACCCCGGAAGGTGCTGGGAGTGTTCCAGTTCAACATCAAAACCGCATCCGGTGTCGAGCAATACGTGATCGATCTGAAGCAGCTGAAGGTGGAGAAGGGTACGACTGCCACTCCGGACGTGACCGTCACCCTGACCGTGGAGGACCTGATCGCGGTCAGTGCCCGCACACTGTCCGTTGGCGATGCGCTAACGCAGGGCAAGCTGGAGATCCAGGGCGATGCCACGCTAGCCGCCAAGCTGGCCGAAGTTATCTAAACGTCCCCGGGGGTCATAATGCACCTCAGCCTTCACGATGTGATTGTGATTAAGTGCCGTCATCCCCTTCCATTGTCCGACTGTTTTTTTGCTTTT]




>consensus_7965#2
CCGCCCACGCGTCCGGTTCGGACCGTGTGCGTGACCGTGTGTTGGGAGACAAGTACTGAC
CGGAAGGCTGAATTCGCATCGATAATGTCGCTAGAAACTGTCATTGAGAAGGTGAAGGCT
CGCGTTGCTGCCGTCGACCCGAACGGACCCCGGAAGGTGCTGGGAGTGTTCCAGTTCAAC
ATCAAAACCGCATCCGGTGTCGAGCAATACGTGATCGATCTGAAGCAGCTGAAGGTGGAG
AAGGGTACGACTGCCACTCCGGACGTGACCGTCACCCTGACCGTGGAGGACCTGATCGCG
GTCAGTGCCCGCACACTGTCCGTTGGCGATGCGCTAACGCAGGGCAAGCTGGAGATCCAG
GGCGATGCCACGCTAGCCGCCAAGCTGGCCGAAGTTATCTAAACGTCCCCGGGGGTCATA
ATGCACCTCAGCCTTCACGATGTGATTGTGATTAAGTGCCGTCATCCCCTTCCATTGTCC
GACTGTTTTTTTGCTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7965#0      ------------------GGTTTTCTGTCTAAAAGCGCGGAATTCCTCGAGCAC-----T 37
consensus_7965#2      ------------------------------------------------------------
consensus_7965#1      CCGGCAGTAGCAGCAGCAGCAAGTGCAAGTGAACCTTTGGTGTCCCACCGTCACCGATGT 60
                                                                                  

consensus_7965#0      GTTGGCCTACTGG--ATAAAACCACCATTTGCAGATCGGCCCGGTTCATTCGTGTGCTGC 95
consensus_7965#2      ---------------------------------------------CCGCCCACGCGTC-- 13
consensus_7965#1      GTTGGAACAGCTGCTATAAAACCACCATTTGCAGATCGACCCGGTTCATTCGTGTGCTGC 120
                                                                    *   *  * *    

consensus_7965#0      ATCGTTCGGACCGTGTGCGTGACCGTGTGTTGGGAGACAAGTACTGACCGGAAGGCTGAA 155
consensus_7965#2      -CGGTTCGGACCGTGTGCGTGACCGTGTGTTGGGAGACAAGTACTGACCGGAAGGCTGAA 72
consensus_7965#1      ATCGTTCGGACCGTGTGCGTGACCGTGTGTTGGGAGACAAGTACTGACCGGAAGGCTGAA 180
                         *********************************************************

consensus_7965#0      TTCGCATCGATAATGTCGCTAGAAACTGTCATTGAGAAGGTGAAGGCTCGCGTGGCTGCC 215
consensus_7965#2      TTCGCATCGATAATGTCGCTAGAAACTGTCATTGAGAAGGTGAAGGCTCGCGTTGCTGCC 132
consensus_7965#1      TTCGCATCGATAATGTCGCTAGAAACTGTCATTGAGAAGGTGAAGGCTCGCGTGGCTGCC 240
                      ***************************************************** ******

consensus_7965#0      GTCGACCCGAACGGACCCCGGAAGGTGCTGGGAGTGTTCCAGTTCAACATCAAAACCGCA 275
consensus_7965#2      GTCGACCCGAACGGACCCCGGAAGGTGCTGGGAGTGTTCCAGTTCAACATCAAAACCGCA 192
consensus_7965#1      GTCGACCCGAACGGACCCCGGAAGGTGCTGGGAGTGTTCCAGTTTAACATCAAAACCGCA 300
                      ******************************************** ***************

consensus_7965#0      TCCGGTGTCGAGCAATACGTGATCGATCTGAAGCAGCTGAAGGTGGAGAAGGGTACGACT 335
consensus_7965#2      TCCGGTGTCGAGCAATACGTGATCGATCTGAAGCAGCTGAAGGTGGAGAAGGGTACGACT 252
consensus_7965#1      TCCGGTGTCGAGCAATACGTGATCGATCTGAAGCAGCTGAAGGTGGAGAAGGGTACGACT 360
                      ************************************************************

consensus_7965#0      GCCACTCCGGACGTGACCGTCACCCTGACCGTGGAGGACCTGATCGCGGTCAGTGCCCGC 395
consensus_7965#2      GCCACTCCGGACGTGACCGTCACCCTGACCGTGGAGGACCTGATCGCGGTCAGTGCCCGC 312
consensus_7965#1      GCCACTCCGGACGTGACCGTCACCCTGACCGTGGAGGACCTGATCGCGGTCAGTGCCCGC 420
                      ************************************************************

consensus_7965#0      ACACTGTCCGTTGGCGATGCGCTAACGCAGGGCAAGCTGGAGATCCAGGGCGATGCCACG 455
consensus_7965#2      ACACTGTCCGTTGGCGATGCGCTAACGCAGGGCAAGCTGGAGATCCAGGGCGATGCCACG 372
consensus_7965#1      ACACTGTCCGTTGGTGATGCGCTAACGCAGGGCAAGCTGGAGATCCAGGGCGATGCCACG 480
                      ************** *********************************************

consensus_7965#0      CTAGCCGCCAAGCTGGCCGAAGTTATCTAAACGTCCCCGGGGGTCATAATGCACCTCAGC 515
consensus_7965#2      CTAGCCGCCAAGCTGGCCGAAGTTATCTAAACGTCCCCGGGGGTCATAATGCACCTCAGC 432
consensus_7965#1      CTAGCCGCCAAGCTGGCCGAAGTTATCTAAACGTCCCCGGCGGTCATAATGCACCTCAGC 540
                      **************************************** *******************

consensus_7965#0      CTTCACGATGTGATT-GTGATTAAGTGCCGCCATCCCCTTCCGTTGTCCGACTG-TTTTT 573
consensus_7965#2      CTTCACGATGTGATT-GTGATTAAGTGCCGTCATCCCCTTCCATTGTCCGACTG-TTTTT 490
consensus_7965#1      CTTCACGATGTGATTTGTGATTAAGTGCCGTCATCCCCTTCCGTTGTTCGACTGATTTTT 600
                      *************** ************** *********** **** ****** *****

consensus_7965#0      TTGCTTTTCGTTCGATATGATACTTTTTTTTAAATAAACAGAACACACTTTCAAAAAAAA 633
consensus_7965#2      TTGCTTTT---------------------------------------------------- 498
consensus_7965#1      TTGCTATT---------------------------------------------------- 608
                      ***** **                                                    

consensus_7965#0      AAAAAAAAAAGGCCACATGTGCTCGAGCTGCAGTTCCCCTC 674
consensus_7965#2      -----------------------------------------
consensus_7965#1      -----------------------------------------