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Anopheles gambiae
cluster # 7973 cluster # 7973       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7973#0 length = 857 sequences # 6  
consensus_7973#1 length = 793 sequences # 1  
consensus_7973#2 length = 323 sequences # 1  

consensusID : consensus_7973#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 857
fasta sequence
                              [ACTGGAATCAAACAGCATCATCCGTGGCCGATTGGTGTGCCAAGAACGCAAACAAACTCGGACTGGCTATTTCTTGTGCGTCCCAAGCTTTCCCCATTTTGAGACCGTGCTATTTACTGTTCTGTATCGGTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCGATCCGATACGCGATTTGCTTCACAGATACTCTTTGCTTTCGCTTGGACAGACACACGGACATATTAAATAATTGTCTCTATTGAAACTCCCTTTCAACGGCCAAGCGACACGAACATAATGACTGTTCACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAAAAAGGTTTTTGTAACATCGTCGCTGACCGCGGACGAGCTGCTGGAAACGATCAAGAAAACGGGAAAGGAAACAAGCTATGTGGGGGTGAAAAATTAAGCATGCTCAAGGCAAGGATGGCAGTGCTAGGCTGGGACGTGCAAACACCTTTGCTTTGAACGAAACGAGCACGCGAAGATATTACCGATAAGAGAGCCATCAGCCACACATTCGCTGGAGAGACCTCTTTTGTGTTTAAAAATATGTTTTTATGTTTTGTTTACTATACTGCAACGATATATTATAAAGGGAGTATCAAAATAAGCGAATAACGACTGAGGAAAATAAAATATGAAAATAAACGATTAAAGTC]

[-] EMBL CNS08O90             [ACTGGAATCAAACAGCATCATCCGTGGCCGATTGGTGTGCCAAGAACGCAAACAAACTCGGACTGGCTATTTCTTGTGCGTCCCAAGCTTTCCCCATTTTGAGACCGTGCTATTTACTGTTCTGTATCGGTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATTATTAGCAAAACTTTTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CNS08O8Z             [                                                                                                                                                 ACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCGATCCGATACGCGATTTGCTTCACAGATACTCTTTGCTTTCGCTTGGACAGACACACGGACATATTAAATAATTGTATCTATTGAAACTCCCTTTCAACGGCCAAGCGACACGAACATAATGACTGTTCACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAAAAAGGTTTTTGTAACATCGTCGCTGACCGCGGACGAGCTGCTGGAAACGATCAAGAAAACGGGAAAGGAAACAATTTATTTTGGGGTGAAAAATTAAGCATGCCCA                                                                                                                                                                                                                                                    ]
[+] EMBL CNS08G6I             [                                                                                                                                                 ACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATCATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCGATCCGATACGCGATTTGCTTCACAGATACTCTTTGCTTTCGCTTGGACAGACACACGGACATATTAAATAAatt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX626606             [                                                                                                                                                    CTCTTTGGATCCTCGTCCGAGCCACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCGATCCGATACGCGATTTGCTTCACAGATACTCTTTGCTTTCGCTTGGACAGACACACGGACATATTAAATAATTGTCTCTATTGAAACTCCCTTTCAACGGCCAAGCGACACGAACATAATGACTGTTCACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAAAAAGGTTTTTGTAACATCGTCGCTGACCGCGGACGAGCTGCTGGAAACGATCAAGAAAACGGGAAAGGAAACAAGCTATGTGGGGGTGAAAAATTAAGCATGCTCAAGGCAAGGATGGCAGTGCTAGGCTGGGACGTGCAAACACCTTTGCTTTGAACGAAACGAGCACGCGAAGATATTACCGATAAGAGAGCCATCAGCCACACATTCGCTGGAGAGACCTCTTTTGTGTTTAAAAATATGTTTTTATGTTTTGTTTACTATACTGCAACGATATATTATAAAGGGAGTATCAAAATAAGCGAA                                            ]
[+] EMBL BX628362             [                                                                                                                                                           GATCCTCGTCCGAGCCACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCGATCCGATACGCGATTTGCTTCACAGATACTCTTTGCTTTCGCTTGGACAGACACACGGACATATTAAATAATTGTCTCTATTGAAACTCCCTTTCAACGGCCAAGCGACACGAACATAATGACTGTTCACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAAAAAGGTTTTTGTAACATCGTCGCTGACCGCGGACGAGCTGCTGGAAACGATCAAGAAAACGGGAAAGGAAACAAGCTATGTGGGGGTGAAAAATTAAGCATGCTCAAGGCAAGGATGGCAGTGCTAGGCTGGGACGTGCAAACACCTTTGCTTTGAACGAAACGAGCACGCGAAGATATTACCGATAAGAGAGCCATCAGCCACACATTCGCTGGAGAGACCTCTTTTGTGTTTAAAAATATGTTTTTATGTTTTGTTTACTATACTGCAACGAT                                                                           ]
[+] EMBL BM646878             [                                                                                                                                                                                                                                                                                                                                                                                                           ccgACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAAAAAGGTTTTTGTAACATCGTCGCTGACCGCGGACGAGCTGCTGGAAACGATCAAGAAAACGGGAAAGGAAACAAGCTATGTGGGGGTGAAAAATTAAGCATGCTCAAGGCAAGGATGGCAGTGCTAGGCTGGGACGTGCAAACACCTTTGCTTTGAACGAAACGAGCACGCGAAGATATTACCGATAAGAGAGCCATCAGCCACACATTCGCTGGAGAGACCTCTTTTGTGTTTAAAAATATGTTTTTATGTTTTGTTTACTATACTGCAACGATATATTATAAAGGGAGTATCAAAATAAGCGAATAACGACTGAGGAAAATAAAATATGAAAATAAACGATTAAAGTC]


>consensus_7973#0 ACTGGAATCAAACAGCATCATCCGTGGCCGATTGGTGTGCCAAGAACGCAAACAAACTCG GACTGGCTATTTCTTGTGCGTCCCAAGCTTTCCCCATTTTGAGACCGTGCTATTTACTGT TCTGTATCGGTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCGAGCCACGACACAA TATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATT GCAACGCTGCAACGGGTTTAAAGTGCACCGATCCGATACGCGATTTGCTTCACAGATACT CTTTGCTTTCGCTTGGACAGACACACGGACATATTAAATAATTGTCTCTATTGAAACTCC CTTTCAACGGCCAAGCGACACGAACATAATGACTGTTCACGAATTTAATGTCGAAATGAC CTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGA AAAGGTTGAAATCGATTTGGACAACAAAAAGGTTTTTGTAACATCGTCGCTGACCGCGGA CGAGCTGCTGGAAACGATCAAGAAAACGGGAAAGGAAACAAGCTATGTGGGGGTGAAAAA TTAAGCATGCTCAAGGCAAGGATGGCAGTGCTAGGCTGGGACGTGCAAACACCTTTGCTT TGAACGAAACGAGCACGCGAAGATATTACCGATAAGAGAGCCATCAGCCACACATTCGCT GGAGAGACCTCTTTTGTGTTTAAAAATATGTTTTTATGTTTTGTTTACTATACTGCAACG ATATATTATAAAGGGAGTATCAAAATAAGCGAATAACGACTGAGGAAAATAAAATATGAA AATAAACGATTAAAGTC



consensusID : consensus_7973#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 793
fasta sequence
                              [AATTCCCCGAGGTTCGGACTGGCTATTTCTTGTGCGTCCAGCTTTCCCCCTTTTGAGACGTGCTATTTACTGTTCTGTATCGCTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCACAAAGCGATTTGCTTCAGAGATATTCTTTGCCTTTCGCTTCGACAGACTCACCGACTTATTAAATAATTGTCTCTATTGAAATTCCCTTTCAACGGCCGAGCGACACGAACATAATGACTGTTCACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAANAAGGTTGTNACATCGTCGCTGACCGCGGACCGAGCTGCTGGAAACGATCAAGAACACGGGAAGGAAACAAGCTATGTGGGGGTGAACAAATTAAGCATGCTCAAGGGCCAGGATGGCACGTGCTAGGCTGGGACCGTGCCAAACAACCCTTTGCTTTTGAACCGAAAACGAGCACGCGAACGAATATTTTACCGGATAANGAAGAGCCCATCAGCAACACAATTCGACTGGAGAAGACCTCTTTAGTGTAACAACACTCATGTANTGTACGGAACTATACTGGCAACGACATCATTATACCGGGCAGTCTCACANNTAGCGAATTACCGCNNGGNG]

[+] EMBL AL693422             [AATTCCCCGAGGTTCGGACTGGCTATTTCTTGTGCGTCCAGCTTTCCCCCTTTTGAGACGTGCTATTTACTGTTCTGTATCGCTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCACAAAGCGATTTGCTTCAGAGATATTCTTTGCCTTTCGCTTCGACAGACTCACCGACTTATTAAATAATTGTCTCTATTGAAATTCCCTTTCAACGGCCGAGCGACACGAACATAATGACTGTTCACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAANAAGGTTGTNACATCGTCGCTGACCGCGGACCGAGCTGCTGGAAACGATCAAGAACACGGGAAGGAAACAAGCTATGTGGGGGTGAACAAATTAAGCATGCTCAAGGGCCAGGATGGCACGTGCTAGGCTGGGACCGTGCCAAACAACCCTTTGCTTTTGAACCGAAAACGAGCACGCGAACGAATATTTTACCGGATAANGAAGAGCCCATCAGCAACACAATTCGACTGGAGAAGACCTCTTTAGTGTAACAACACTCATGTANTGTACGGAACTATACTGGCAACGACATCATTATACCGGGCAGTCTCACANNTAGCGAATTACCGCNNGGNG]


>consensus_7973#1 AATTCCCCGAGGTTCGGACTGGCTATTTCTTGTGCGTCCAGCTTTCCCCCTTTTGAGACG TGCTATTTACTGTTCTGTATCGCTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCG AGCCACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGC TCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCACAAAGCGATTTGCTTCA GAGATATTCTTTGCCTTTCGCTTCGACAGACTCACCGACTTATTAAATAATTGTCTCTAT TGAAATTCCCTTTCAACGGCCGAGCGACACGAACATAATGACTGTTCACGAATTTAATGT CGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGA AAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAANAAGGTTGTNACATCGTCGCTGAC CGCGGACCGAGCTGCTGGAAACGATCAAGAACACGGGAAGGAAACAAGCTATGTGGGGGT GAACAAATTAAGCATGCTCAAGGGCCAGGATGGCACGTGCTAGGCTGGGACCGTGCCAAA CAACCCTTTGCTTTTGAACCGAAAACGAGCACGCGAACGAATATTTTACCGGATAANGAA GAGCCCATCAGCAACACAATTCGACTGGAGAAGACCTCTTTAGTGTAACAACACTCATGT ANTGTACGGAACTATACTGGCAACGACATCATTATACCGGGCAGTCTCACANNTAGCGAA TTACCGCNNGGNG



consensusID : consensus_7973#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence
                              [AAAACCTGCGGAATTCCTCGAGGACTGTTGGCCCACTGGGATTGGTGTGCCAAAAACGCAAACAAACTCGGACTGGCTATTTTTTGTGCGTCCCAAGCTTTCCCCCTTTTGAGACCGTGCTATTTACTGTTCTTTATCGCTTCGAGGACGTAAGAACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATCATTAGCAAAACTTTTGTGACGTGCCCGCTGTGGACTGGATTGCTCTTTTAACTATTGCAAAGCTGCAACGGGTTTTAAGTGCACCGATCCCATACGCGATTTGCTTTACAAATACTCTTTGTTTCGCTT]

[-] EMBL CNS08G6J             [AAAACCTGCGGAATTCCTCGAGGACTGTTGGCCCACTGGGATTGGTGTGCCAAAAACGCAAACAAACTCGGACTGGCTATTTTTTGTGCGTCCCAAGCTTTCCCCCTTTTGAGACCGTGCTATTTACTGTTCTTTATCGCTTCGAGGACGTAAGAACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATCATTAGCAAAACTTTTGTGACGTGCCCGCTGTGGACTGGATTGCTCTTTTAACTATTGCAAAGCTGCAACGGGTTTTAAGTGCACCGATCCCATACGCGATTTGCTTTACAAATACTCTTTGTTTCGCTT]


>consensus_7973#2 AAAACCTGCGGAATTCCTCGAGGACTGTTGGCCCACTGGGATTGGTGTGCCAAAAACGCA AACAAACTCGGACTGGCTATTTTTTGTGCGTCCCAAGCTTTCCCCCTTTTGAGACCGTGC TATTTACTGTTCTTTATCGCTTCGAGGACGTAAGAACGCTCTTTGGATCCTCGTCCGAGC CACGACACAATATCATTAGCAAAACTTTTGTGACGTGCCCGCTGTGGACTGGATTGCTCT TTTAACTATTGCAAAGCTGCAACGGGTTTTAAGTGCACCGATCCCATACGCGATTTGCTT TACAAATACTCTTTGTTTCGCTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7973#0      ----------ACTGGAATCAAACAGCATCATCCGTGGCCGATTGGTGTGCCAAGAACGCA 50
consensus_7973#1      ------------------------------------------------------AATTCC 6
consensus_7973#2      AAAACCTGCGGAATTCCTCGAGGACTGTTGGCCCACTGGGATTGGTGTGCCAAAAACGCA 60
                                                                            **  * 

consensus_7973#0      AACAAACTCGGACTGGCTATTTCTTGTGCGTCCCAAGCTTTCCCCATTTTGAGACCGTGC 110
consensus_7973#1      CCGAGGTTCGGACTGGCTATTTCTTGTGCGTCC--AGCTTTCCCCCTTTTGAGAC-GTGC 63
consensus_7973#2      AACAAACTCGGACTGGCTATTTTTTGTGCGTCCCAAGCTTTCCCCCTTTTGAGACCGTGC 120
                         *   *************** **********  ********** ********* ****

consensus_7973#0      TATTTACTGTTCTGTATCGGTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCGAGC 170
consensus_7973#1      TATTTACTGTTCTGTATCGCTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCGAGC 123
consensus_7973#2      TATTTACTGTTCTTTATCGCTTCGAGGACGTAAGAACGCTCTTTGGATCCTCGTCCGAGC 180
                      ************* ***** ****** ******* *************************

consensus_7973#0      CACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCT 230
consensus_7973#1      CACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCT 183
consensus_7973#2      CACGACACAATATCATTAGCAAAACTTTTGTGACGTGCCCGCTGTGGACTGGATTGCTCT 240
                      ************* ******** **** ****************** *************

consensus_7973#0      TCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCGATCCGATACGCGATTTGCTT 290
consensus_7973#1      TCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCAC-----CACAAAGCGATTTGCTT 238
consensus_7973#2      TTTAACTATTGCAAAGCTGCAACGGGTTTTAAGTGCACCGATCCCATACGCGATTTGCTT 300
                      * * ********** ************** ********     *   * ***********

consensus_7973#0      CACAGATACTCTTTGC-TTTCGCTTGGACAGACACACGGACATATTAAATAATTGTCTCT 349
consensus_7973#1      CAGAGATATTCTTTGCCTTTCGCTTCGACAGACTCACCGACTTATTAAATAATTGTCTCT 298
consensus_7973#2      TACAAATACTCTTTGT--TTCGCTT----------------------------------- 323
                       * * *** ******   *******                                   

consensus_7973#0      ATTGAAACTCCCTTTCAACGGCCAAGCGACACGAACATAATGACTGTTCACGAATTTAAT 409
consensus_7973#1      ATTGAAATTCCCTTTCAACGGCCGAGCGACACGAACATAATGACTGTTCACGAATTTAAT 358
consensus_7973#2      ------------------------------------------------------------
                                                                                  

consensus_7973#0      GTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAA 469
consensus_7973#1      GTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAA 418
consensus_7973#2      ------------------------------------------------------------
                                                                                  

consensus_7973#0      GAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAAAAAGGTTTTTGTAACATCGTCG 529
consensus_7973#1      GAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAANAAGGTT---GTNACATCGTCG 475
consensus_7973#2      ------------------------------------------------------------
                                                                                  

consensus_7973#0      CTGACCGCGGAC-GAGCTGCTGGAAACGATCAAGAAAACGGGAAAGGAAACAAGCTATGT 588
consensus_7973#1      CTGACCGCGGACCGAGCTGCTGGAAACGATCAAGAACACGGGAA-GGAAACAAGCTATGT 534
consensus_7973#2      ------------------------------------------------------------
                                                                                  

consensus_7973#0      GGGGGTGAA-AAATTAAGCATGCTCAAGG-CAAGGATGGCA-GTGCTAGGCTGGGAC-GT 644
consensus_7973#1      GGGGGTGAACAAATTAAGCATGCTCAAGGGCCAGGATGGCACGTGCTAGGCTGGGACCGT 594
consensus_7973#2      ------------------------------------------------------------
                                                                                  

consensus_7973#0      GC-AAACA--CCTTTGCTTT-GAAC--GAAACGAGCACGCGAAG----ATATTACCG-AT 693
consensus_7973#1      GCCAAACAACCCTTTGCTTTTGAACCGAAAACGAGCACGCGAACGAATATTTTACCGGAT 654
consensus_7973#2      ------------------------------------------------------------
                                                                                  

consensus_7973#0      AAGAGAG---CCATCAGCCACACA-TTCG-CTGGAGA-GACCTCTTTTGTGTTTAAAAAT 747
consensus_7973#1      AANGAAGAGCCCATCAGCAACACAATTCGACTGGAGAAGACCTCTTTAGTG--TAACAAC 712
consensus_7973#2      ------------------------------------------------------------
                                                                                  

consensus_7973#0      ATGTTTTTATGTTTTGTTTACTATACTG-CAACGATAT-ATTATAAAGGG-AGTATCAAA 804
consensus_7973#1      ACTCATGTANTGTACGGA-ACTATACTGGCAACGACATCATTATACCGGGCAGTCTCACA 771
consensus_7973#2      ------------------------------------------------------------
                                                                                  

consensus_7973#0      ATAAGCGAATAACGACTGAGGAAAATAAAATATGAAAATAAACGATTAAAGTC 857
consensus_7973#1      NNTAGCGAATTACCGCNNGGNG------------------------------- 793
consensus_7973#2      -----------------------------------------------------
                                                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)