These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7973#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 857 fasta sequence [ACTGGAATCAAACAGCATCATCCGTGGCCGATTGGTGTGCCAAGAACGCAAACAAACTCGGACTGGCTATTTCTTGTGCGTCCCAAGCTTTCCCCATTTTGAGACCGTGCTATTTACTGTTCTGTATCGGTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCGATCCGATACGCGATTTGCTTCACAGATACTCTTTGCTTTCGCTTGGACAGACACACGGACATATTAAATAATTGTCTCTATTGAAACTCCCTTTCAACGGCCAAGCGACACGAACATAATGACTGTTCACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAAAAAGGTTTTTGTAACATCGTCGCTGACCGCGGACGAGCTGCTGGAAACGATCAAGAAAACGGGAAAGGAAACAAGCTATGTGGGGGTGAAAAATTAAGCATGCTCAAGGCAAGGATGGCAGTGCTAGGCTGGGACGTGCAAACACCTTTGCTTTGAACGAAACGAGCACGCGAAGATATTACCGATAAGAGAGCCATCAGCCACACATTCGCTGGAGAGACCTCTTTTGTGTTTAAAAATATGTTTTTATGTTTTGTTTACTATACTGCAACGATATATTATAAAGGGAGTATCAAAATAAGCGAATAACGACTGAGGAAAATAAAATATGAAAATAAACGATTAAAGTC] [-] EMBL CNS08O90 [ACTGGAATCAAACAGCATCATCCGTGGCCGATTGGTGTGCCAAGAACGCAAACAAACTCGGACTGGCTATTTCTTGTGCGTCCCAAGCTTTCCCCATTTTGAGACCGTGCTATTTACTGTTCTGTATCGGTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATTATTAGCAAAACTTTTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTG ] [+] EMBL CNS08O8Z [ ACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCGATCCGATACGCGATTTGCTTCACAGATACTCTTTGCTTTCGCTTGGACAGACACACGGACATATTAAATAATTGTATCTATTGAAACTCCCTTTCAACGGCCAAGCGACACGAACATAATGACTGTTCACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAAAAAGGTTTTTGTAACATCGTCGCTGACCGCGGACGAGCTGCTGGAAACGATCAAGAAAACGGGAAAGGAAACAATTTATTTTGGGGTGAAAAATTAAGCATGCCCA ] [+] EMBL CNS08G6I [ ACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATCATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCGATCCGATACGCGATTTGCTTCACAGATACTCTTTGCTTTCGCTTGGACAGACACACGGACATATTAAATAAatt ] [+] EMBL BX626606 [ CTCTTTGGATCCTCGTCCGAGCCACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCGATCCGATACGCGATTTGCTTCACAGATACTCTTTGCTTTCGCTTGGACAGACACACGGACATATTAAATAATTGTCTCTATTGAAACTCCCTTTCAACGGCCAAGCGACACGAACATAATGACTGTTCACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAAAAAGGTTTTTGTAACATCGTCGCTGACCGCGGACGAGCTGCTGGAAACGATCAAGAAAACGGGAAAGGAAACAAGCTATGTGGGGGTGAAAAATTAAGCATGCTCAAGGCAAGGATGGCAGTGCTAGGCTGGGACGTGCAAACACCTTTGCTTTGAACGAAACGAGCACGCGAAGATATTACCGATAAGAGAGCCATCAGCCACACATTCGCTGGAGAGACCTCTTTTGTGTTTAAAAATATGTTTTTATGTTTTGTTTACTATACTGCAACGATATATTATAAAGGGAGTATCAAAATAAGCGAA ] [+] EMBL BX628362 [ GATCCTCGTCCGAGCCACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCGATCCGATACGCGATTTGCTTCACAGATACTCTTTGCTTTCGCTTGGACAGACACACGGACATATTAAATAATTGTCTCTATTGAAACTCCCTTTCAACGGCCAAGCGACACGAACATAATGACTGTTCACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAAAAAGGTTTTTGTAACATCGTCGCTGACCGCGGACGAGCTGCTGGAAACGATCAAGAAAACGGGAAAGGAAACAAGCTATGTGGGGGTGAAAAATTAAGCATGCTCAAGGCAAGGATGGCAGTGCTAGGCTGGGACGTGCAAACACCTTTGCTTTGAACGAAACGAGCACGCGAAGATATTACCGATAAGAGAGCCATCAGCCACACATTCGCTGGAGAGACCTCTTTTGTGTTTAAAAATATGTTTTTATGTTTTGTTTACTATACTGCAACGAT ] [+] EMBL BM646878 [ ccgACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAAAAAGGTTTTTGTAACATCGTCGCTGACCGCGGACGAGCTGCTGGAAACGATCAAGAAAACGGGAAAGGAAACAAGCTATGTGGGGGTGAAAAATTAAGCATGCTCAAGGCAAGGATGGCAGTGCTAGGCTGGGACGTGCAAACACCTTTGCTTTGAACGAAACGAGCACGCGAAGATATTACCGATAAGAGAGCCATCAGCCACACATTCGCTGGAGAGACCTCTTTTGTGTTTAAAAATATGTTTTTATGTTTTGTTTACTATACTGCAACGATATATTATAAAGGGAGTATCAAAATAAGCGAATAACGACTGAGGAAAATAAAATATGAAAATAAACGATTAAAGTC] consensusID : consensus_7973#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence [AATTCCCCGAGGTTCGGACTGGCTATTTCTTGTGCGTCCAGCTTTCCCCCTTTTGAGACGTGCTATTTACTGTTCTGTATCGCTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCACAAAGCGATTTGCTTCAGAGATATTCTTTGCCTTTCGCTTCGACAGACTCACCGACTTATTAAATAATTGTCTCTATTGAAATTCCCTTTCAACGGCCGAGCGACACGAACATAATGACTGTTCACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAANAAGGTTGTNACATCGTCGCTGACCGCGGACCGAGCTGCTGGAAACGATCAAGAACACGGGAAGGAAACAAGCTATGTGGGGGTGAACAAATTAAGCATGCTCAAGGGCCAGGATGGCACGTGCTAGGCTGGGACCGTGCCAAACAACCCTTTGCTTTTGAACCGAAAACGAGCACGCGAACGAATATTTTACCGGATAANGAAGAGCCCATCAGCAACACAATTCGACTGGAGAAGACCTCTTTAGTGTAACAACACTCATGTANTGTACGGAACTATACTGGCAACGACATCATTATACCGGGCAGTCTCACANNTAGCGAATTACCGCNNGGNG] [+] EMBL AL693422 [AATTCCCCGAGGTTCGGACTGGCTATTTCTTGTGCGTCCAGCTTTCCCCCTTTTGAGACGTGCTATTTACTGTTCTGTATCGCTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCTTCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCACAAAGCGATTTGCTTCAGAGATATTCTTTGCCTTTCGCTTCGACAGACTCACCGACTTATTAAATAATTGTCTCTATTGAAATTCCCTTTCAACGGCCGAGCGACACGAACATAATGACTGTTCACGAATTTAATGTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAAGAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAANAAGGTTGTNACATCGTCGCTGACCGCGGACCGAGCTGCTGGAAACGATCAAGAACACGGGAAGGAAACAAGCTATGTGGGGGTGAACAAATTAAGCATGCTCAAGGGCCAGGATGGCACGTGCTAGGCTGGGACCGTGCCAAACAACCCTTTGCTTTTGAACCGAAAACGAGCACGCGAACGAATATTTTACCGGATAANGAAGAGCCCATCAGCAACACAATTCGACTGGAGAAGACCTCTTTAGTGTAACAACACTCATGTANTGTACGGAACTATACTGGCAACGACATCATTATACCGGGCAGTCTCACANNTAGCGAATTACCGCNNGGNG] consensusID : consensus_7973#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [AAAACCTGCGGAATTCCTCGAGGACTGTTGGCCCACTGGGATTGGTGTGCCAAAAACGCAAACAAACTCGGACTGGCTATTTTTTGTGCGTCCCAAGCTTTCCCCCTTTTGAGACCGTGCTATTTACTGTTCTTTATCGCTTCGAGGACGTAAGAACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATCATTAGCAAAACTTTTGTGACGTGCCCGCTGTGGACTGGATTGCTCTTTTAACTATTGCAAAGCTGCAACGGGTTTTAAGTGCACCGATCCCATACGCGATTTGCTTTACAAATACTCTTTGTTTCGCTT] [-] EMBL CNS08G6J [AAAACCTGCGGAATTCCTCGAGGACTGTTGGCCCACTGGGATTGGTGTGCCAAAAACGCAAACAAACTCGGACTGGCTATTTTTTGTGCGTCCCAAGCTTTCCCCCTTTTGAGACCGTGCTATTTACTGTTCTTTATCGCTTCGAGGACGTAAGAACGCTCTTTGGATCCTCGTCCGAGCCACGACACAATATCATTAGCAAAACTTTTGTGACGTGCCCGCTGTGGACTGGATTGCTCTTTTAACTATTGCAAAGCTGCAACGGGTTTTAAGTGCACCGATCCCATACGCGATTTGCTTTACAAATACTCTTTGTTTCGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7973#0 ----------ACTGGAATCAAACAGCATCATCCGTGGCCGATTGGTGTGCCAAGAACGCA 50 consensus_7973#1 ------------------------------------------------------AATTCC 6 consensus_7973#2 AAAACCTGCGGAATTCCTCGAGGACTGTTGGCCCACTGGGATTGGTGTGCCAAAAACGCA 60 ** * consensus_7973#0 AACAAACTCGGACTGGCTATTTCTTGTGCGTCCCAAGCTTTCCCCATTTTGAGACCGTGC 110 consensus_7973#1 CCGAGGTTCGGACTGGCTATTTCTTGTGCGTCC--AGCTTTCCCCCTTTTGAGAC-GTGC 63 consensus_7973#2 AACAAACTCGGACTGGCTATTTTTTGTGCGTCCCAAGCTTTCCCCCTTTTGAGACCGTGC 120 * *************** ********** ********** ********* **** consensus_7973#0 TATTTACTGTTCTGTATCGGTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCGAGC 170 consensus_7973#1 TATTTACTGTTCTGTATCGCTTCGAGCACGTAAGCACGCTCTTTGGATCCTCGTCCGAGC 123 consensus_7973#2 TATTTACTGTTCTTTATCGCTTCGAGGACGTAAGAACGCTCTTTGGATCCTCGTCCGAGC 180 ************* ***** ****** ******* ************************* consensus_7973#0 CACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCT 230 consensus_7973#1 CACGACACAATATTATTAGCAACACTTGTGTGACGTGCCCGCTGTGTACTGGATTGCTCT 183 consensus_7973#2 CACGACACAATATCATTAGCAAAACTTTTGTGACGTGCCCGCTGTGGACTGGATTGCTCT 240 ************* ******** **** ****************** ************* consensus_7973#0 TCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCACCGATCCGATACGCGATTTGCTT 290 consensus_7973#1 TCTCACTATTGCAACGCTGCAACGGGTTTAAAGTGCAC-----CACAAAGCGATTTGCTT 238 consensus_7973#2 TTTAACTATTGCAAAGCTGCAACGGGTTTTAAGTGCACCGATCCCATACGCGATTTGCTT 300 * * ********** ************** ******** * * *********** consensus_7973#0 CACAGATACTCTTTGC-TTTCGCTTGGACAGACACACGGACATATTAAATAATTGTCTCT 349 consensus_7973#1 CAGAGATATTCTTTGCCTTTCGCTTCGACAGACTCACCGACTTATTAAATAATTGTCTCT 298 consensus_7973#2 TACAAATACTCTTTGT--TTCGCTT----------------------------------- 323 * * *** ****** ******* consensus_7973#0 ATTGAAACTCCCTTTCAACGGCCAAGCGACACGAACATAATGACTGTTCACGAATTTAAT 409 consensus_7973#1 ATTGAAATTCCCTTTCAACGGCCGAGCGACACGAACATAATGACTGTTCACGAATTTAAT 358 consensus_7973#2 ------------------------------------------------------------ consensus_7973#0 GTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAA 469 consensus_7973#1 GTCGAAATGACCTGCACCGGTTGCTCGGGTGCCGTCGAGCGGGTGCTCGGCAAGCTGAAA 418 consensus_7973#2 ------------------------------------------------------------ consensus_7973#0 GAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAAAAAGGTTTTTGTAACATCGTCG 529 consensus_7973#1 GAAAAAGTGGAAAAGGTTGAAATCGATTTGGACAACAANAAGGTT---GTNACATCGTCG 475 consensus_7973#2 ------------------------------------------------------------ consensus_7973#0 CTGACCGCGGAC-GAGCTGCTGGAAACGATCAAGAAAACGGGAAAGGAAACAAGCTATGT 588 consensus_7973#1 CTGACCGCGGACCGAGCTGCTGGAAACGATCAAGAACACGGGAA-GGAAACAAGCTATGT 534 consensus_7973#2 ------------------------------------------------------------ consensus_7973#0 GGGGGTGAA-AAATTAAGCATGCTCAAGG-CAAGGATGGCA-GTGCTAGGCTGGGAC-GT 644 consensus_7973#1 GGGGGTGAACAAATTAAGCATGCTCAAGGGCCAGGATGGCACGTGCTAGGCTGGGACCGT 594 consensus_7973#2 ------------------------------------------------------------ consensus_7973#0 GC-AAACA--CCTTTGCTTT-GAAC--GAAACGAGCACGCGAAG----ATATTACCG-AT 693 consensus_7973#1 GCCAAACAACCCTTTGCTTTTGAACCGAAAACGAGCACGCGAACGAATATTTTACCGGAT 654 consensus_7973#2 ------------------------------------------------------------ consensus_7973#0 AAGAGAG---CCATCAGCCACACA-TTCG-CTGGAGA-GACCTCTTTTGTGTTTAAAAAT 747 consensus_7973#1 AANGAAGAGCCCATCAGCAACACAATTCGACTGGAGAAGACCTCTTTAGTG--TAACAAC 712 consensus_7973#2 ------------------------------------------------------------ consensus_7973#0 ATGTTTTTATGTTTTGTTTACTATACTG-CAACGATAT-ATTATAAAGGG-AGTATCAAA 804 consensus_7973#1 ACTCATGTANTGTACGGA-ACTATACTGGCAACGACATCATTATACCGGGCAGTCTCACA 771 consensus_7973#2 ------------------------------------------------------------ consensus_7973#0 ATAAGCGAATAACGACTGAGGAAAATAAAATATGAAAATAAACGATTAAAGTC 857 consensus_7973#1 NNTAGCGAATTACCGCNNGGNG------------------------------- 793 consensus_7973#2 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||