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Anopheles gambiae
cluster # 8008 cluster # 8008       Sequences # 8       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8008#0 length = 1477 sequences # 5  
consensus_8008#1 length = 1163 sequences # 1  
consensus_8008#2 length = 875 sequences # 1  
consensus_8008#3 length = 786 sequences # 1  

consensusID : consensus_8008#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1477
fasta sequence
                              [TTTTTTACATAACAGCGTTTTCATTTTTATTTCAATTCTTCCACATCTCTCTCGCTCTCTCCAGGATCGCGCGTAAACTGAGGCTCAAGTCACAAAGCCATGGAAATGAAAATCAGGGCCAACCGGGGTCTAGTGGTGAGCCTACCGCCGCTGCGACCGAGCGAACTGCTCCGCAAAATTATCGTGGAGAAGGATGAGACGTTCTGCAAAATGTTCGAAGTTACGCCTCCGACCGAGCAAGAATAATTCTACATAAATAGTTTAATTTTAAGGTTTGTTGGTACTGTAACAAAATTGATAAAACAAACGAAGGAAAACGTATTTGTTTAGCGTATTTTCTGGTGTCGCTTCCGTCGATACTGTTGCTTTACCAGCCGCAACGTTTCCCTAATAAGTTCGTCCTTCGTTGGACTTCTGGTGCGTCGTCTCTTCGAGCGGGACGCGTAATACCGTTCTACATCGATTACTTCTCCACTATCATCTGCATCGTCGATTATGATGGTGTCCTGTTCGTACGCTGATACTGGGGCAGCTTGTGTAGCTTGTGCTTCTAAGGCTGGCTCCACTTCTTGTTCTGTAGACGAGGCCATTGTTGATTCCTGTTCTGTAGCAGCATCCGGTGGTAATTCCTGTTCTGAAGCCGAGGGCAGTTTTGGTTCCTGTTCTGTAGCTCGAACAAATGGCGATTCATGTTCTTTACATGAAGTCGACGGTGATCCGTGAGCTGAGGCAGAGGATGGAGTTGATTCCTTTTCTTTTGCGGGTTCTGGTCCTTCTTCTTTGCTGGCAGCGACACTTTCCGGTACTTCTGTACTGCTTACAGCTATCAGTTGGTCAGAAGAGTCAGTTTGTGTGCTAGCATCCGTCATGGCGGCAGCTTTAATGCTAATTTCCGGTAGCTTCGGCTTTGTCGATGGTTCGTCCCAATTGTGCCGCTCTTTGTCTTTACTCTTCCACACTTCCCGTAGCACAGTGAATTCCTCAATCTTTAGCAGGCAGTAGGAGCACACGACAGACGAAAAGTCCGTCTCGTATCTGATTACGATATCCGATATTAGGGTAATGGTCTCCAGATGGGACGGGGTCAGTTCAACGCCTCCACCCAAACTAAAACAAGGCACC-CATATATGGTCAGCACTATCACACAGTCGGCACCGTTTCGACGGCGACAATTGTTCCGCCGGCAGTATGACTTCCGATTTCACGATCACCTCATCCGTCCAGTCGGAATTTGCCTCGGCCGGATTGTCTACCGCATAGTCGATGGTGCGATCGTCTGGCAGTGAGGACGTTTCGGATTTTACACTATCAGCCTTTCCTATTCTTGTCATGGTAAGTTTGCTGTTTGGATGCGCCGTGTTGTTAAGGAGTGTTGCAGCCAAGTGTGAAGCATTCAGTTTGATGAATCGAAACAAAGTCAGAGGATAAAATTTCGTCAATGTTTTGTGC-TTCACCAGCACTTGGGCTGTCCACATTT]

[+] EMBL CNS08HUG             [TTTTTTACATAACAGCGTTTTCATTTTTATTTCAATTCTTCCACATCTCTCTCGCTCTCTCCAGGATCGCGCGTAAACTGAGGCTCAAGTCACAAAGCCATGGAAATGAAAATCAGGGCCAACCGGGGTCTAGTGGTGAGCCTACCGCCGCTGCGACCGAGCGAACTGCTCCGCAAAATTATCGTGGAGAAGGATGAGACGTTCTGCAAAATGTTCGAAGTTACGCCTCCGACCGAGCAAGAATAATTCTACATAAATAGTTTAATTTTAAGGTTTGTTGGTACTGTAACAAAATTGATAAAACAAACGAAGGAAAACGTATTTGTTTAGCGTATTTTCTGGTGTCGCTTCCGTCGATACTGTTGCTTTACCAGCCGCAACGTTTCCCTAATAAGTTCGTCCTTCGTTGGACTTCTGGTGCGTCGTCTCTTCGAGCGGGACGCGTAATACCGTTCTACATCGATTACTTCTCCACTATCATCTGCATCGTCGATTATGATGGTGTCCTGTTCGTACGCTGATACTGGGGCAGCTTGTGTAGCTTGTGCTTCTAAGGCTGGCTCCACTTCTTGTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CNS08P7Y             [                                                                                                                                                                                                                                                                                        caACTGTAACAAAATTGATAACATAAACGAAGGGAAACGTATTTGCTTAGCGTATTTCCTGGTGTCGCTTCCGTCGATACTGTTGCTTTACCAGCCGCAACGTTTCCCTAATAAGTTCGTCCTTCGTTGGACTTCTGGTGCGTCGTCTCTTCGAGCGAGACGCGTAATACCGTTCTACATCGATCACTTCTTCACTATCATCTGCATCGTCGATTATGATGGTGTCCTGTTCGTACGCTGATACTGGGGCAGCTTGTGTAGCTTGTGCTTCTAATGCTGGCTCCACTTCTTGTTCTGTAGACGAGGCCATTGTTGATTCCTGTTCTGTAGCAGCATCCGGTGGTAATTCCTGTTCTGAAGCCGAGGGCAGTTTTGGTTCCTGTTCTGTAGCTCGAACAAATGGCGATTCATGTTCTTTACATGAAGTCGACGGTGATCCGTGAGCTGAGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CNS09JNL             [                                                                                                                                                                                                                                                                                                                                                                                                                  TTCGTTGGACTTCTGGTGCGTCGTCTCTTCGAGCGGGACGCGTAATACCGTTTTACATCGATTACTTCTCCACTATCATCTGCATCGTCGATTATGATGGTGTCCTGTTCGTACGCTGATACTGGGGCAGCTTGTGTAGCTTGTGCTTCTAAGGCTGGCTCCACTTCTTGTTCTGTAGACGAGGCCATTGTTGATTCCTGTTCTGTAGCAGCATCCGGTGGTAATTCCTGTTCTGAAGCCGAGGGCAGTGTTGGTTCCTGTTCTGTAGCTCGAACAAATGGCGATTCATGTTCTTTACATGAAGTCGACGGTGATCCGTGAGCTGCAGCAGAGGATGGAGTTGATTCCTTTTCTTTTGCGGGTTCTGGTCCTTCTTCTTTGCTGGCAGCGACACTTTCCGGTACTTCTGTACTGCTTACAGCTATCAGTTGGTCAGAAGAGTCAGTTTGTGTGCTAGCATCCGTCATGGCGGCAGCTTTAATGCTAATTTCCGGTAGCTTCGGCTTTGTCGATGGTTCGTCCCAATTGTGCCGCTCTTTGTCTTTACTCTTCCACACTTCCCGTAGCACAGTGAATTCCTCAATCTTTAGCAGGCAGTAGGAGCACACGACAGACGAAAAGTCCGTCTCGTATCTGATTACGATATCCGATATTAGGGTAATGGTCTCCAGATGGGACGGGGTCAGTTCAACGCCTCCACCCAAACTAAAACAAGGCACC CATATATGGTCAGCACTATCACACAGTCGGCACCGTTTCGACGGCGACAATTGTTCCGCCGGCAGTATGACTTCCGATTTCACGATCACCTCATCCGTCCAGTCGGAATTTGCCTCGGCCGGATTGTCTACCGCATAGTCGATGGTGCGATCGTCTGGCAGTGAGGACGTTTCGGATTTTACACTATCAGCCTTTCCTATTCTTGTCATGGTAAGTTTGCTGTTTGGATGCGCCGTGTTGTTAAGGAGTGTTGCAGCCAAGTGTGAAGCATTCAGTTTGATGAATCGAAACAAAGTCAGAGGATAAAATTTCGTCAATGTTTTGTGC TTCACCAGCACTTGGGCTG         ]
[-] EMBL CNS08P7X             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGTCAGTACTTTCACACGACTGACGAAAAGTCCGTCTCGTATCTGATTACGATATCCGATATTAGGGTAATGGTCTCCAGATGGGACGGGGTCAGTTCAACGCCTCCACCCAAACTAAAACAAGGCACCGCATATATGGTCAGCACTATCACACAGTCGGCACCGTTTCGATGGCGACAATTGTTCCGCCGGCAGTATGACTTCCGATTTCACGATCACCTCATCCGTCCAGTCGGAATTTGCCTCGGCCGGATTGTCTACCGCATAGTCCATGGTGCGATCGTCTGGCAGTGAGGACGTTTCGGATTTTACACTATCAGCCTTTCCTATTCTTGTCATGGTAAGTTTGCTGTTTGGATGCGCCGTGTTGTTAAGCAGTGTTGCAGCCAAGTGTGTAGCATTCAGTTTGATGAATCGCAGCAAAGTCGGAGGATAAAATTTCGTCAATGTTTTGTGCTTTTACCAGCACTTGAGCTGTCCACATTT]
[-] EMBL CNS08HUF             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAGTCCGTCTCGTATCTGATTACGATATCCGATATTAGGGTAATGGTCTCCAGATGGGACGGGGTCAGTTCAACGCCTCCACCCAAACTAAAACAAGGCACC CATATATGGTCAGCACTATCACACAGTCGGCACCGTTTCGACGGCGACAATTGTTCCGCCGGCAGTATGACTTCCGATTTCACGATCACCTCATCCGTCCAGTCGGAATTTGCCTCGGCCGGATTGTCTACCGCATAGTCGATGGTGCGATCGTCTGGCAGTGAGGACGTTTCGGATTTTACACTATCAGCCTTTCCTATTCTTGTCATGGTAAGTTTGCTGTTTGGATGCGCCGTGTTGTTAAGGAGTGTTGCAGCCAAGTGTGAAGCATTCAGTTTGATGAATCGAAACAAAGTCAGAGGATAAAATTTCGTCAATGTTTTGTGC TTCACCAGCAGTT GGCTTTCC      ]


>consensus_8008#0 TTTTTTACATAACAGCGTTTTCATTTTTATTTCAATTCTTCCACATCTCTCTCGCTCTCT CCAGGATCGCGCGTAAACTGAGGCTCAAGTCACAAAGCCATGGAAATGAAAATCAGGGCC AACCGGGGTCTAGTGGTGAGCCTACCGCCGCTGCGACCGAGCGAACTGCTCCGCAAAATT ATCGTGGAGAAGGATGAGACGTTCTGCAAAATGTTCGAAGTTACGCCTCCGACCGAGCAA GAATAATTCTACATAAATAGTTTAATTTTAAGGTTTGTTGGTACTGTAACAAAATTGATA AAACAAACGAAGGAAAACGTATTTGTTTAGCGTATTTTCTGGTGTCGCTTCCGTCGATAC TGTTGCTTTACCAGCCGCAACGTTTCCCTAATAAGTTCGTCCTTCGTTGGACTTCTGGTG CGTCGTCTCTTCGAGCGGGACGCGTAATACCGTTCTACATCGATTACTTCTCCACTATCA TCTGCATCGTCGATTATGATGGTGTCCTGTTCGTACGCTGATACTGGGGCAGCTTGTGTA GCTTGTGCTTCTAAGGCTGGCTCCACTTCTTGTTCTGTAGACGAGGCCATTGTTGATTCC TGTTCTGTAGCAGCATCCGGTGGTAATTCCTGTTCTGAAGCCGAGGGCAGTTTTGGTTCC TGTTCTGTAGCTCGAACAAATGGCGATTCATGTTCTTTACATGAAGTCGACGGTGATCCG TGAGCTGAGGCAGAGGATGGAGTTGATTCCTTTTCTTTTGCGGGTTCTGGTCCTTCTTCT TTGCTGGCAGCGACACTTTCCGGTACTTCTGTACTGCTTACAGCTATCAGTTGGTCAGAA GAGTCAGTTTGTGTGCTAGCATCCGTCATGGCGGCAGCTTTAATGCTAATTTCCGGTAGC TTCGGCTTTGTCGATGGTTCGTCCCAATTGTGCCGCTCTTTGTCTTTACTCTTCCACACT TCCCGTAGCACAGTGAATTCCTCAATCTTTAGCAGGCAGTAGGAGCACACGACAGACGAA AAGTCCGTCTCGTATCTGATTACGATATCCGATATTAGGGTAATGGTCTCCAGATGGGAC GGGGTCAGTTCAACGCCTCCACCCAAACTAAAACAAGGCACCCATATATGGTCAGCACTA TCACACAGTCGGCACCGTTTCGACGGCGACAATTGTTCCGCCGGCAGTATGACTTCCGAT TTCACGATCACCTCATCCGTCCAGTCGGAATTTGCCTCGGCCGGATTGTCTACCGCATAG TCGATGGTGCGATCGTCTGGCAGTGAGGACGTTTCGGATTTTACACTATCAGCCTTTCCT ATTCTTGTCATGGTAAGTTTGCTGTTTGGATGCGCCGTGTTGTTAAGGAGTGTTGCAGCC AAGTGTGAAGCATTCAGTTTGATGAATCGAAACAAAGTCAGAGGATAAAATTTCGTCAAT GTTTTGTGCTTCACCAGCACTTGGGCTGTCCACATTT



consensusID : consensus_8008#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1163
fasta sequence
                              [CCGTCCCCCTGCTNTGTTTCGTNCNGCNACCGCAGCGCCGCGGGTCGCTGTGCTGGCGGNATGCGGTAGCNNGACCCCTGCTGGANGTTGGTCCGCGGGTAGNTCGGCGCATATNTGGTATCNGTTTTGTNCCACTNCTTGGTCCCACTGCTTTTAGCTTAGTGGCTTTATGATTAACTTCTTCGCGCGGATTTNCTGGNGTGATAAGTGTGTGAAACGGGGTGCGCTAATATGCTTTCGGCAAACGGGCANACTCCCCGTGGNTTTTTTGTCCGCGTTGNGTGCCCCCGTNCGNATCGTTAACCTCGTTGCCGGCTGCTTATGCCCGGGGATAGATCGCGNGTTTTTGCTATGCCCTCTGGTCCCGTCGTGTTGCCACGCTAGNGGAGTGCCCNCNTCCGGGATAGTGTGCGATGAGTGNGTAGAGATGTATAGAAGGAGGNGTNGTGGTTAAAGCGAAGNTGGTATTGATTGTAAGGNGTTNTTNAATAGATGTTTGTTGGTTGATAANGAGAAGGGGGGCGTNTNGTGATGGTGGTTTTGGGCNATAATAGTGNGTTTGTGGTTTTTGAGAGCNGTGTATGATTAGGGTTGTGTGGAATTGTAAAAACGCGAAATNTTTAGTATATNCCCGTGGGAATAAGGGGGTCGAAAGNAANCTGGGGTTAANGTTGTGTGTTGGCCATGTTAGNCGGTTAACTNTGCTTGTTCGCTNGGTTTTGTTCGCGCTTTTGTCCGCTGCNTCGGGAATTGAGCCGTTCGTGTTGGCCTTTTGTAANCCCANGCCGCCGGGCCNAACCGGTGTTGTCNGCCCGTGAGAANGTAAAACGTGTCGGGTCCCTTTTCCGTGTTGGGAACCCNTTTTCTTGGTGTNGCNGGTTCGGTTCCTTACGTTCGAGCGAGACGCGTAATACCGTTCTACATCGATCACTTCTTCACGTATCATCNGGCATCGTCGATTATGATGGTGTCCTGTTCGTACGCTGATACTGGGNCAGCTTGTGTAGCTTGTGCTTCTAATGCTGGCTCCACTTCTTGTTCTGTAGACGAGGCCATTGTTGATTCCTGTTCTGTAGCAGCATCCGGTGGTAATTCCTGTTCTGAAGCCGAGGCAGTGTTGTTAACCTCTGGCAATTCTGCTCGAGCATGCATTTATGGGTGTG]

[-] EMBL AL697222             [CCGTCCCCCTGCTNTGTTTCGTNCNGCNACCGCAGCGCCGCGGGTCGCTGTGCTGGCGGNATGCGGTAGCNNGACCCCTGCTGGANGTTGGTCCGCGGGTAGNTCGGCGCATATNTGGTATCNGTTTTGTNCCACTNCTTGGTCCCACTGCTTTTAGCTTAGTGGCTTTATGATTAACTTCTTCGCGCGGATTTNCTGGNGTGATAAGTGTGTGAAACGGGGTGCGCTAATATGCTTTCGGCAAACGGGCANACTCCCCGTGGNTTTTTTGTCCGCGTTGNGTGCCCCCGTNCGNATCGTTAACCTCGTTGCCGGCTGCTTATGCCCGGGGATAGATCGCGNGTTTTTGCTATGCCCTCTGGTCCCGTCGTGTTGCCACGCTAGNGGAGTGCCCNCNTCCGGGATAGTGTGCGATGAGTGNGTAGAGATGTATAGAAGGAGGNGTNGTGGTTAAAGCGAAGNTGGTATTGATTGTAAGGNGTTNTTNAATAGATGTTTGTTGGTTGATAANGAGAAGGGGGGCGTNTNGTGATGGTGGTTTTGGGCNATAATAGTGNGTTTGTGGTTTTTGAGAGCNGTGTATGATTAGGGTTGTGTGGAATTGTAAAAACGCGAAATNTTTAGTATATNCCCGTGGGAATAAGGGGGTCGAAAGNAANCTGGGGTTAANGTTGTGTGTTGGCCATGTTAGNCGGTTAACTNTGCTTGTTCGCTNGGTTTTGTTCGCGCTTTTGTCCGCTGCNTCGGGAATTGAGCCGTTCGTGTTGGCCTTTTGTAANCCCANGCCGCCGGGCCNAACCGGTGTTGTCNGCCCGTGAGAANGTAAAACGTGTCGGGTCCCTTTTCCGTGTTGGGAACCCNTTTTCTTGGTGTNGCNGGTTCGGTTCCTTACGTTCGAGCGAGACGCGTAATACCGTTCTACATCGATCACTTCTTCACGTATCATCNGGCATCGTCGATTATGATGGTGTCCTGTTCGTACGCTGATACTGGGNCAGCTTGTGTAGCTTGTGCTTCTAATGCTGGCTCCACTTCTTGTTCTGTAGACGAGGCCATTGTTGATTCCTGTTCTGTAGCAGCATCCGGTGGTAATTCCTGTTCTGAAGCCGAGGCAGTGTTGTTAACCTCTGGCAATTCTGCTCGAGCATGCATTTATGGGTGTG]


>consensus_8008#1 CCGTCCCCCTGCTNTGTTTCGTNCNGCNACCGCAGCGCCGCGGGTCGCTGTGCTGGCGGN ATGCGGTAGCNNGACCCCTGCTGGANGTTGGTCCGCGGGTAGNTCGGCGCATATNTGGTA TCNGTTTTGTNCCACTNCTTGGTCCCACTGCTTTTAGCTTAGTGGCTTTATGATTAACTT CTTCGCGCGGATTTNCTGGNGTGATAAGTGTGTGAAACGGGGTGCGCTAATATGCTTTCG GCAAACGGGCANACTCCCCGTGGNTTTTTTGTCCGCGTTGNGTGCCCCCGTNCGNATCGT TAACCTCGTTGCCGGCTGCTTATGCCCGGGGATAGATCGCGNGTTTTTGCTATGCCCTCT GGTCCCGTCGTGTTGCCACGCTAGNGGAGTGCCCNCNTCCGGGATAGTGTGCGATGAGTG NGTAGAGATGTATAGAAGGAGGNGTNGTGGTTAAAGCGAAGNTGGTATTGATTGTAAGGN GTTNTTNAATAGATGTTTGTTGGTTGATAANGAGAAGGGGGGCGTNTNGTGATGGTGGTT TTGGGCNATAATAGTGNGTTTGTGGTTTTTGAGAGCNGTGTATGATTAGGGTTGTGTGGA ATTGTAAAAACGCGAAATNTTTAGTATATNCCCGTGGGAATAAGGGGGTCGAAAGNAANC TGGGGTTAANGTTGTGTGTTGGCCATGTTAGNCGGTTAACTNTGCTTGTTCGCTNGGTTT TGTTCGCGCTTTTGTCCGCTGCNTCGGGAATTGAGCCGTTCGTGTTGGCCTTTTGTAANC CCANGCCGCCGGGCCNAACCGGTGTTGTCNGCCCGTGAGAANGTAAAACGTGTCGGGTCC CTTTTCCGTGTTGGGAACCCNTTTTCTTGGTGTNGCNGGTTCGGTTCCTTACGTTCGAGC GAGACGCGTAATACCGTTCTACATCGATCACTTCTTCACGTATCATCNGGCATCGTCGAT TATGATGGTGTCCTGTTCGTACGCTGATACTGGGNCAGCTTGTGTAGCTTGTGCTTCTAA TGCTGGCTCCACTTCTTGTTCTGTAGACGAGGCCATTGTTGATTCCTGTTCTGTAGCAGC ATCCGGTGGTAATTCCTGTTCTGAAGCCGAGGCAGTGTTGTTAACCTCTGGCAATTCTGC TCGAGCATGCATTTATGGGTGTG



consensusID : consensus_8008#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 875
fasta sequence
                              [GNCNTCTCTGGCGNGTTTACCCGTATGGCCGTAGTGCAACTGTGGNTTCNACGATAATGNAGGTGTNCCAAGGTGTTTGGTTGTGTTACCATTGAGGTCCGGTTCGGCTGNGTCCNCCTGGGCTGTCGGTNCAGNGCCCGTTGTTTGTTACTGGCCTNNATATCTTGGTTCCCCGGGTGTTANGGCCTTNTGTCTGGGCCNTTTTTTCTNTGTCCGTGTACTTCGCGCTTCTTCCTGTTTCCCCCACNTTGGNTTGCTCGTCTTCCTTTGGTGTGTCCGGNTTGTACCGTCTGTCCACACATTCCCCGTGAGCACCAGTNAATGTCCGCGTCAATGCGTTTNAGGCCAGGNCCAGTAGCGACGCCTACACGCGCACCAGGAGCGTAAAAGTTCCGCTTCTCTCNTATACTGATTGACGANAATCTCGATGATTTAGGATAAATGAGTCTCCTAGATGGGACCAGGGGTCAGTTCAACGCCTCCGACCCAATAANTAAGTACAAGTGCAACTCCTATAATATGNTCAAGCTACTAATCTACAACAAGTCGGCACCGTTTCGATGACGACAATTGTTCCNCCCGGCAGTATGACTTCTCGATTGTCACGATCACCTCANCCNTCCATGTCGGAATTTCGCCTCGGCCCGGATTGTCCTACCGCATAGTCCATGGTCGCGATCGTCTGGCAGTGAGGACGTTTCGGATTTTACANTATCAGCCTTTCCTATTCTNNGTCATGGTAAGTTTGCTGTTTGGATGCCCCGTGNTGTTAAGCAGTGTTGCAGCGCAAGTGTCTAGCATTCAGNTTGATGAATCGCAACAAAGTGCGGAGGATAANTTTCGTCAATGTTTGTGCTTACCCGTGGCGATTCTGC]

[-] EMBL AL695974             [GNCNTCTCTGGCGNGTTTACCCGTATGGCCGTAGTGCAACTGTGGNTTCNACGATAATGNAGGTGTNCCAAGGTGTTTGGTTGTGTTACCATTGAGGTCCGGTTCGGCTGNGTCCNCCTGGGCTGTCGGTNCAGNGCCCGTTGTTTGTTACTGGCCTNNATATCTTGGTTCCCCGGGTGTTANGGCCTTNTGTCTGGGCCNTTTTTTCTNTGTCCGTGTACTTCGCGCTTCTTCCTGTTTCCCCCACNTTGGNTTGCTCGTCTTCCTTTGGTGTGTCCGGNTTGTACCGTCTGTCCACACATTCCCCGTGAGCACCAGTNAATGTCCGCGTCAATGCGTTTNAGGCCAGGNCCAGTAGCGACGCCTACACGCGCACCAGGAGCGTAAAAGTTCCGCTTCTCTCNTATACTGATTGACGANAATCTCGATGATTTAGGATAAATGAGTCTCCTAGATGGGACCAGGGGTCAGTTCAACGCCTCCGACCCAATAANTAAGTACAAGTGCAACTCCTATAATATGNTCAAGCTACTAATCTACAACAAGTCGGCACCGTTTCGATGACGACAATTGTTCCNCCCGGCAGTATGACTTCTCGATTGTCACGATCACCTCANCCNTCCATGTCGGAATTTCGCCTCGGCCCGGATTGTCCTACCGCATAGTCCATGGTCGCGATCGTCTGGCAGTGAGGACGTTTCGGATTTTACANTATCAGCCTTTCCTATTCTNNGTCATGGTAAGTTTGCTGTTTGGATGCCCCGTGNTGTTAAGCAGTGTTGCAGCGCAAGTGTCTAGCATTCAGNTTGATGAATCGCAACAAAGTGCGGAGGATAANTTTCGTCAATGTTTGTGCTTACCCGTGGCGATTCTGC]


>consensus_8008#2 GNCNTCTCTGGCGNGTTTACCCGTATGGCCGTAGTGCAACTGTGGNTTCNACGATAATGN AGGTGTNCCAAGGTGTTTGGTTGTGTTACCATTGAGGTCCGGTTCGGCTGNGTCCNCCTG GGCTGTCGGTNCAGNGCCCGTTGTTTGTTACTGGCCTNNATATCTTGGTTCCCCGGGTGT TANGGCCTTNTGTCTGGGCCNTTTTTTCTNTGTCCGTGTACTTCGCGCTTCTTCCTGTTT CCCCCACNTTGGNTTGCTCGTCTTCCTTTGGTGTGTCCGGNTTGTACCGTCTGTCCACAC ATTCCCCGTGAGCACCAGTNAATGTCCGCGTCAATGCGTTTNAGGCCAGGNCCAGTAGCG ACGCCTACACGCGCACCAGGAGCGTAAAAGTTCCGCTTCTCTCNTATACTGATTGACGAN AATCTCGATGATTTAGGATAAATGAGTCTCCTAGATGGGACCAGGGGTCAGTTCAACGCC TCCGACCCAATAANTAAGTACAAGTGCAACTCCTATAATATGNTCAAGCTACTAATCTAC AACAAGTCGGCACCGTTTCGATGACGACAATTGTTCCNCCCGGCAGTATGACTTCTCGAT TGTCACGATCACCTCANCCNTCCATGTCGGAATTTCGCCTCGGCCCGGATTGTCCTACCG CATAGTCCATGGTCGCGATCGTCTGGCAGTGAGGACGTTTCGGATTTTACANTATCAGCC TTTCCTATTCTNNGTCATGGTAAGTTTGCTGTTTGGATGCCCCGTGNTGTTAAGCAGTGT TGCAGCGCAAGTGTCTAGCATTCAGNTTGATGAATCGCAACAAAGTGCGGAGGATAANTT TCGTCAATGTTTGTGCTTACCCGTGGCGATTCTGC



consensusID : consensus_8008#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 786
fasta sequence
                              [AAATGTGCATACCGTAAACGAAAGAGTGTTCAGAGGATCTGTCGTGGTTGGTGGTATAACGATCGCCAAGTCGCAGGAGTGTACCAACAAGCTTGCGATGCGAATAGTGTTGGAAAGGGCGAAGGAACGACTATCGAAGTATTGTTACTCCGTTATACGTCAGAAAAATGCCACCGAGGTGGAGGGCATTGAGGTCGTGTCGAAATCATCCGCCACAAAGTCCACCAGCGAAGGACAATCCATGGAACAGGAACCCGACGTGAGCAACAAACTCGACGCGGGCAAAATTGGCTTTCAGCTGTTGGCCAAGTTGGGGTGGAGTGGCGCCGGTCTGGGTGCTCGCGGTGACGGTATAGTGAACCCGATCAGTGTCGAGCAGAAGGTGGGTCGCCAAGGGCTCGGCGGGGACAGCTCGGAGGGTGCTAAGCTCGATCGGGTGGAAATCAGGAAGAAGCTGCAGGATTTACGTGACGGAAAGCTCGCGGAACATTGCATCGTGTTTAGCAACGAGTATTCGAAGGACGATAGAAAAATGATCCATGAGATCGCGCGTAAACTGAGGCTCAAGTCACAAAGCCATGGAAATGAAAATCAGGGCAACCGGCGTCTAGTGGTGAGCCTACCGCCGCTGCGACCGAGCGAACTGTCCGCAAAATTATCGTGGAGAAGGATGAGACGTTCTGCAAAATGTTCGAAGTTACGCCTCCGACCGAGCAAGAATAATTCTACATAAATAGTTTAATTTTAAGGTTTGTTGCAACTGTAACAAAATTGATAACATAAACG]

[-] EMBL CNS08LCB             [AAATGTGCATACCGTAAACGAAAGAGTGTTCAGAGGATCTGTCGTGGTTGGTGGTATAACGATCGCCAAGTCGCAGGAGTGTACCAACAAGCTTGCGATGCGAATAGTGTTGGAAAGGGCGAAGGAACGACTATCGAAGTATTGTTACTCCGTTATACGTCAGAAAAATGCCACCGAGGTGGAGGGCATTGAGGTCGTGTCGAAATCATCCGCCACAAAGTCCACCAGCGAAGGACAATCCATGGAACAGGAACCCGACGTGAGCAACAAACTCGACGCGGGCAAAATTGGCTTTCAGCTGTTGGCCAAGTTGGGGTGGAGTGGCGCCGGTCTGGGTGCTCGCGGTGACGGTATAGTGAACCCGATCAGTGTCGAGCAGAAGGTGGGTCGCCAAGGGCTCGGCGGGGACAGCTCGGAGGGTGCTAAGCTCGATCGGGTGGAAATCAGGAAGAAGCTGCAGGATTTACGTGACGGAAAGCTCGCGGAACATTGCATCGTGTTTAGCAACGAGTATTCGAAGGACGATAGAAAAATGATCCATGAGATCGCGCGTAAACTGAGGCTCAAGTCACAAAGCCATGGAAATGAAAATCAGGGCAACCGGCGTCTAGTGGTGAGCCTACCGCCGCTGCGACCGAGCGAACTGTCCGCAAAATTATCGTGGAGAAGGATGAGACGTTCTGCAAAATGTTCGAAGTTACGCCTCCGACCGAGCAAGAATAATTCTACATAAATAGTTTAATTTTAAGGTTTGTTGCAACTGTAACAAAATTGATAACATAAACG]


>consensus_8008#3 AAATGTGCATACCGTAAACGAAAGAGTGTTCAGAGGATCTGTCGTGGTTGGTGGTATAAC GATCGCCAAGTCGCAGGAGTGTACCAACAAGCTTGCGATGCGAATAGTGTTGGAAAGGGC GAAGGAACGACTATCGAAGTATTGTTACTCCGTTATACGTCAGAAAAATGCCACCGAGGT GGAGGGCATTGAGGTCGTGTCGAAATCATCCGCCACAAAGTCCACCAGCGAAGGACAATC CATGGAACAGGAACCCGACGTGAGCAACAAACTCGACGCGGGCAAAATTGGCTTTCAGCT GTTGGCCAAGTTGGGGTGGAGTGGCGCCGGTCTGGGTGCTCGCGGTGACGGTATAGTGAA CCCGATCAGTGTCGAGCAGAAGGTGGGTCGCCAAGGGCTCGGCGGGGACAGCTCGGAGGG TGCTAAGCTCGATCGGGTGGAAATCAGGAAGAAGCTGCAGGATTTACGTGACGGAAAGCT CGCGGAACATTGCATCGTGTTTAGCAACGAGTATTCGAAGGACGATAGAAAAATGATCCA TGAGATCGCGCGTAAACTGAGGCTCAAGTCACAAAGCCATGGAAATGAAAATCAGGGCAA CCGGCGTCTAGTGGTGAGCCTACCGCCGCTGCGACCGAGCGAACTGTCCGCAAAATTATC GTGGAGAAGGATGAGACGTTCTGCAAAATGTTCGAAGTTACGCCTCCGACCGAGCAAGAA TAATTCTACATAAATAGTTTAATTTTAAGGTTTGTTGCAACTGTAACAAAATTGATAACA TAAACG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8008#0      TTTTTTACATAACAGCGTTTTCATTTTTATTTCAATTCTTCCACATCTCTCTCGCTCTCT 60
consensus_8008#2      ------------------------------------------------------------
consensus_8008#1      ------------------------------------------------------------
consensus_8008#3      ------------------------------------------------------------
                                                                                  

consensus_8008#0      CCAGGATCGCGCGTAAACTGAGGCTCAAGTCACAAAGCCATGGAAATGAAAATCAGGGCC 120
consensus_8008#2      ------------------------------------------------------------
consensus_8008#1      ------------------------------------------------------------
consensus_8008#3      ------------------------------------------------------------
                                                                                  

consensus_8008#0      AACCGGGGTCTAGTGGTGAGCCTACCGCCGCTGCGACCGAGCGAACTGCTCCGCAAAATT 180
consensus_8008#2      ------------------------------------------------------------
consensus_8008#1      ------------------------------------------------------------
consensus_8008#3      ------------------------------------------------------------
                                                                                  

consensus_8008#0      ATCGTGGAGAAGGATGAGACGTTCTGCAAAATGTTCGAAGTTACGCCTCCGACCGAGCAA 240
consensus_8008#2      ------------------------------------------------------------
consensus_8008#1      ------------------------------------------------------------
consensus_8008#3      ------------------------------------------------------------
                                                                                  

consensus_8008#0      GAATAATTCTACATAAATAGTTTAATTTTAAGGTTTGTTGGTACTGTAACAAAATTGATA 300
consensus_8008#2      ------------------------------------------------------------
consensus_8008#1      ------------------------------------------------------------
consensus_8008#3      ------------------------------------------------------------
                                                                                  

consensus_8008#0      AAACAAACGAAGGAAAACGTATTTGTTTAGCGTATTTTCTGGTGTCGCTTCCGTCGATAC 360
consensus_8008#2      ------------------------------------------------------------
consensus_8008#1      ------------------------------CCGTCCCCCTGCTNTGTTTCGTNCNGCNAC 30
consensus_8008#3      ------------------------------------------------------------
                                                                                  

consensus_8008#0      TGTTGCTTTACCAGCCGCAACGTTTCCCTAATA----AGTTCGTCCTTCGTTGGACTTCT 416
consensus_8008#2      ------------------------------------------------------------
consensus_8008#1      CGCAGCGCCGCGGGTCGCTGTGCTGGCGGNATGCGGTAGCNNGACCCCTGCTGGANGT-T 89
consensus_8008#3      ------------------------------------------------------------
                                                                                  

consensus_8008#0      GGTGCGTCGTCTCTTCGAGCGGGACGCGTAATACCGTTCTACATCGATTACTTCTCCACT 476
consensus_8008#2      ------------------------------------------------------------
consensus_8008#1      GGTCCGCGGGTAGNTCGGCGCATATNTGGTAT-CNGTTTTGTNCCACTNCTTGGTCCCAC 148
consensus_8008#3      ------------------------------------------------------------
                                                                                  

consensus_8008#0      ATCATCTGCATCGTCGATTATGATGGTGTCCTGTTCGTACGCTGATACTGGGGCAGCTTG 536
consensus_8008#2      ------------------------------------------------------------
consensus_8008#1      TGCTTTTAGCTTAGTGGCTTTATGATTAACTTCTTCGCGCGGATTTNCTGGNGTGATAAG 208
consensus_8008#3      ------------------------------------------------------------
                                                                                  

consensus_8008#0      TGTAGCTTGTGCTTCTAAGGCTGGCTCCACTTCTTGTTCTGTAGACGAGGCCATTGTTGA 596
consensus_8008#2      ------------------------------------------------------------
consensus_8008#1      TGTG--------TGAAACGGGGTGCGCTAATATGCTTTCGGCAAACGGGCANACTCCCCG 260
consensus_8008#3      ---------------------------------------------------AAATGTGCA 9
                                                                                  

consensus_8008#0      TTCCTGTTCTGTAGCAGCATCCGGTGGTAATTCCTGTTCTGAAGCCGAGGGCAGTTTTGG 656
consensus_8008#2      -------------GNCNTCTCTGGCGNGTTTACCCGTATGGCCGT--AGTGCAACTGTGG 45
consensus_8008#1      TGGNTTTTTTGT--CCGCGTTGNGTGCCCCCGTNCGNATCGTTAACCTCGTTGCCGGCTG 318
consensus_8008#3      TACCGTAAACGAAAGAGTGTTCAGAGGATCTGTCGTGGTTGGTG----GTATAACGATCG 65
                                         *   * *              *                  *

consensus_8008#0      TTCCTG---TTCTGTAGCTCGAACAAAT----GGCGATTCATGTTCTTTACATGAAG--T 707
consensus_8008#2      NTTCNACGATAATGNAGGTGTNCCAA------GGTGTTTGGTTGTGTTACCATTGAGGTC 99
consensus_8008#1      CTTATGCCCGGGGATAGATCGCGNGTTTTTGCTATGCCCTCTGGTCCCGTCGTGTTGCCA 378
consensus_8008#3      CCAAGTCGCAGGAGTGTACCAACAAGCT----TGCGATGCG-AATAGTGTTGGAAAG--- 117
                                                         *        *           *   

consensus_8008#0      CGACGGTGATCCGTGAGCTGA-GGCAGAGGATGGAGTTGATTCCTTTTCTTTTGCGGGTT 766
consensus_8008#2      CGGTTCGGCTGNGTCCNCCTG-GGCTGTCGGTNCAGN--GCCCGTTGTTTGTTACTGGCC 156
consensus_8008#1      CGCTAGNGGAGTGCCCNCNTCCGGGATAGTGTGCGATGAGTGNGTAGAGATGTATAGAAG 438
consensus_8008#3      -GGCGAAGGAACGACTATCGAAGTATTGTTACTCCGTTATACGTCAGAAAAATGCCACCG 176
                       *     *    *         *                             *       

consensus_8008#0      CTGGTCCTTCTTCTTTGCTGGCAGCGACACTTTCCGGTACTT-CTGTACTGCTTACAGCT 825
consensus_8008#2      TNNATATCTTGGTTCCCCGGGTGTTANGGCCTTNTG-----T-CTGGGCCNTTT------ 204
consensus_8008#1      GAGGNGTNGTGGTTAAAGCGAAGNTGGTATTGATTGTAAGGNGTTNTTNAATAGATGTTT 498
consensus_8008#3      AGGTGGAGGGCATTGAGGTCGTGTCGAAATCATCCGCCACAAAGTCCACCAGCGAAGGAC 236
                                   *                     *        *               

consensus_8008#0      ATCAGTTGGTCAGAAGAGTCAGTTTGTGTGCTAGCATCCGTCATGGCGGCAGCTTTAATG 885
consensus_8008#2      -TTTCTNTGTCCGTGTACTTCGCGCTTCTTCCTGTTTCCCCCACNTTG---GNTTGCTCG 260
consensus_8008#1      GTTGGTTGATAANGAGAAGGGGGGCGTNTNGTGATGGTGGTTTTGGGC----NATAATAG 554
consensus_8008#3      AATCCATGGAACAGGAACCCGACGTGAGCAACAAACTCGACGCGGGCA--AAATTGGCTT 294
                                      *                                     *     

consensus_8008#0      CTAATTTCCGGTAGCTTCGGCTTTGTCGATGGTTCGTCCCAATTGTGCCGCTCTTTGTCT 945
consensus_8008#2      TCTTCCTTTGGTGTGTCCGGNTT-GT--ACCGTCTGTCCACA------CATTCCCCGTGA 311
consensus_8008#1      TGNGTTTGTGGTTTTTGAGAGCN-GTGTATGATTAGGGTTGTGTGGAATTGTAAAAACGC 613
consensus_8008#3      TCAGCTGTTGGCCAAGTTGGGGTGGAGTGGCGCCGGTCTGGGTGCTCGCGGTGACGGTAT 354
                               **       *     *          *               *        

consensus_8008#0      TTACTCTTCCACACTTCCCGTAGCACAGTGAATTCCTCAATCTTTAGCAGGCAGTAGGAG 1005
consensus_8008#2      GCACCAGTNAATGTCCGCGTCAATGCGTTTNAGGCCAGGNCCAGTAGCGACGCCTACACG 371
consensus_8008#1      GAAATNTTTAGTATATNCC-CGTGGGAATAAGGGGGTCGAAAGNAANCTGGGGTTAANGT 672
consensus_8008#3      AGTGAACCCGATCAGTGTCGAGCAGAAGGTGGGTCGCCAAGGGCTCGGCGGGGACA---- 410
                                                                             *    

consensus_8008#0      CACACGACAGACG-AAAAGTCCG-----TCTCGTAT-CTGATT-ACGATA--TCCGATA- 1054
consensus_8008#2      CGCACCAGGAGCGTAAAAGTTCCGCTTCTCTCNTATACTGATTGACGANAATCTCGATGA 431
consensus_8008#1      TGTGTGTTGGCCATGTTAGNCGG-----TTAACTNTGCTTGTT--CGCTNGGTTTTGT-- 723
consensus_8008#3      -GCTCGGAGGGTGCTAAGCTCGA-------TCGGGTGGAAATCAGGAAGAAGCTGCAGGA 462
                                                         *     *                  

consensus_8008#0      -TTAGGGTAAT--GGTCTCC-AGATGGGAC--GGGGTCA-GTTCAACGCCTCC-ACCCAA 1106
consensus_8008#2      TTTAGGATAAATGAGTCTCCTAGATGGGACCAGGGGTCA-GTTCAACGCCTCCGACCCAA 490
consensus_8008#1      -TCGCGCTTTT---GTCCGCTGCNTCGGGAATTGAGCC--GTTCGTGTTGGCCTTTTGTA 777
consensus_8008#3      TTTACGTGACGGAAAGCTC----GCGGAACATTGCATCGTGTTTAGCAACGAGTATTCGA 518
                       *   *          *         *      *   *  ***                *

consensus_8008#0      --ACTAAA-ACAAG----GCACCCATA-TATGGTCAG--CACTATCACACA----GTCGG 1152
consensus_8008#2      TAANTAAGTACAAGTGCAACTCCTATAATATGNTCAAGCTACTAATCTACAACAAGTCGG 550
consensus_8008#1      ANCCCANGCCGCCGGGCCNAACCGGTGTTGTCNGCCCG-TGAGAANGTAAAACGTGTCGG 836
consensus_8008#3      AGGACGATAGAAAA---ATGATCCATGAGATCGCGCGTAAACTGAGGCTCAA---GTCA- 571
                                            *  *    *                   *    ***  

consensus_8008#0      -CACCGTTTCGACGGCGACAATTGTTCCGCC-GGCAGT-----ATGACTTC-CGATT-TC 1203
consensus_8008#2      -CACCGTTTCGATGACGACAATTGTTCCNCCCGGCAGT-----ATGACTTCTCGATTGTC 604
consensus_8008#1      GTCCCTTTTCCGTGTTGGGAACCCNTTTTCTTGGTGTN-----GCNGGTTC-GGTTCCTT 890
consensus_8008#3      -CAAAGCCATGGAAATGAAAATCAGGGCAACCGGCGTCTAGTGGTGAGCCTACCGCCGCT 630
                                      *  **           **                          

consensus_8008#0      ACGATCACCTCATCCGTCCA-----GTCGGAATTT-GCCTCGGCC-GGATTGTC-TACCG 1255
consensus_8008#2      ACGATCACCTCANCCNTCCAT----GTCGGAATTTCGCCTCGGCCCGGATTGTCCTACCG 660
consensus_8008#1      ACGTTCGAGCGAGACGCGTAATACCGTTCTACATCGATCACTTCTTCACGTATCATCNGG 950
consensus_8008#3      GCGACCGAGCGAACTGTCCG-------CAAAATTATCGTGGAGAAGGATGAGACGTTCTG 683
                       **  *     *                  *  *                   * *   *

consensus_8008#0      CATAGTCGATGGT-GCGATCGTCTGGCAGTGAGGACGTTTCGGATTTTACACTATCAGCC 1314
consensus_8008#2      CATAGTCCATGGTCGCGATCGTCTGGCAGTGAGGACGTTTCGGATTTTACANTATCAGCC 720
consensus_8008#1      CATCGTCGATTATGATGGTGTCCTGTTCGTACGCTGATACTGGGNCAGCTTGTGT-AGCT 1009
consensus_8008#3      CAAAATGTTCGAAGTTACGCCTCCGACCGAGCAAGAAT----AATTCTACATAAATAG-- 737
                      **   *                * *   *        *                  **  

consensus_8008#0      TTTCCTATTCTTG-TCATGGTAAGT-TTGCTGTTTGGATGCGCCGTGTTGTTAAGGAGTG 1372
consensus_8008#2      TTTCCTATTCTNNGTCATGGTAAGT-TTGCTGTTTGGATGCCCCGTGNTGTTAAGCAGTG 779
consensus_8008#1      TGTGCTTCTAATGCTGGCTCCACTTCTTGTTCTGTAGACGAGGC-CATTGTTGATTCCTG 1068
consensus_8008#3      TTTAATTTTAAGGTTTGTTGCAACTGTAACAAAATTGATAACATAAACG----------- 786
                      * *  *  *     *      *  * *       * **                      

consensus_8008#0      TTGCAGC-CAAGTGTGAAGCATTCAGTTTGATGAATCGAAACAAAGT-CAGAGGATAAAA 1430
consensus_8008#2      TTGCAGCGCAAGTGTCTAGCATTCAGNTTGATGAATCGCAACAAAGTGCGGAGGATAAN- 838
consensus_8008#1      TT-CTGTAGCAGCATCCGGTGGTAATTCC--TGTTCTGAAGCCGAGGCAGTGTTGTTAAC 1125
consensus_8008#3      ------------------------------------------------------------
                                                                                  

consensus_8008#0      TTTCGTCAATGTTTTGTGCTTCACCAGCACTTGGGCTGTCCACATTT 1477
consensus_8008#2      TTTCGTCAATGTTT-GTGCTT-ACCCGTGGCGATTCTGC-------- 875
consensus_8008#1      CTCTGGCAATTCTGCTCGAGCATGCATTTATGGGTGTG--------- 1163
consensus_8008#3      -----------------------------------------------
                                                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)