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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1435 fasta sequence
[CCGATCCCGTCAATGTAACGCCACCACCACCTGGCAGCGGAACACAAGCCGGCCTGTCGGTGTTAAAGTCTGCTCACGCGCTAAAGTCCAGCACCTCCAATCTGATGTCTGCCGCGGCTCCCTCCATGTCGTCGCTCGGTACGCAGGACTCGACCTCCAGCCAATCGATCGCTAATGGTGGCAGTGCGGTAGAGTTGAACGATGCAGGCAGCTCCGGAATTGCTTCCGGTGGAACGGCTACAACGCTATCCGGCACTAAGAGCGTGCCACGCGCGACAGACGACACGAAGAAAGGACCTGGAAGTACCGTGTCCAGCCCTGCCACATCCATGGGTGGGGTAGGGGGTAAGCAGGTAAATATTGTGGTAGAAAAATCGGACCTTGAATCGTTCATGCGGACCGATTGGCGACACTTTAACTGCAAAACATGGCACCTGGAACCGACTGTACGACTCCTTTCATGGGCTGGCAAATCGATCGAACCGTACGGCATCGACTACATTCTGAACAAGCTTGGATTTAGCCACGCGCGCACCACGATTCCCAAGTGGCTTCAGCGTGGCTTCATGGATCCGCTCGATAAGGTGGAAGCGCTGCTGATGCTGCAGCTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGACAAGGACTCTAGTAGAGATAAATGAAGTGTAAGTGTAAGTGCAAGGTGCTAGAGCAGGGAGCGCAAGGGCTTGGGAAAGACACAAACATTGCCCGTGCCGGTGATGCGTTTTGTGGAATGTGTGGTACAATCTAATGTCTAACTATTGTTGCTTTTTTATAGCTTCCTAGCTATACAAACCCGTTGCCGCGTGGCACGTATGTGCACCGGTTCAGGATTAGAACGCATTTAAACTTTCCACGTAGGGATTTGATATTTGACGTACTCTTTTTCATCCAACGAACCAAAACAGGTCCGTCGCTGTGTTGCGCGGAATCTTTACTCTTTGTTTATCGTGTTTATCTCAACGTCTGCTCAACTATAACTATCCTTCTGTGTTATGCTTTGTTTTTTTTTTTGCTCGCAACCATGTGCAGCCCGTAACCGTGATCTAGTCTAAATTGGTATGTTATCTTCAGAACATACGGTTTGCTGAAACCCACCCCAACTGCTGCTATTAATGGACATGATATTCAAAGTATGGTATGGCTCTATTGAACCGTGCTTTCGATACCATTTTCCCCTCTCGAAGGGACATTACAGTTCCTGCGACGTACCCATCGATATGGCTTCTCTAATATCCNGTTTAATGAGGATAGCGAATTACACTACTCGCGTATCTGGNGCATGTAGCCTCCTCCTCTCCACAAAACCAAGACATTACAATAACGAGACATAACGATCATCAATAATCGATTAATAATTAAACAAGAAATAAAAAAAATGTGATCTACATAATAATATCAAGCC]
[+] EMBL BM635866 [CCGATCCCGTCAATGTAACGCCACCACCACCTGGCAGCGGAACACAAGCCGGCCTGTCGGTGTTAAAGTCTGCTCACGCGCTAAAGTCCAGCACCTCCAATCTGATGTCTGCCGCGGCTCCCTCCATGTCGTCGCTCGGTACGCAGGACTCGACCTCCAGCCAATCGATCGCTAATGGTGGCAGTGCGGTAGAGTTGAACGATGCAGGCAGCTCCGGAATTGCTTCCGGTGGAACGGCTACAACGCTATCCGGCACTAAGAGCGTGCCACGCGCGACAGACGACACGAAGAAAGGACCTGGAAGCACCGTGTCCAGCCCTGCCACATCCATGGGTGGGGTAGGGGGTAAGCAGGTAAATATTGTGGTAGAAAAATCGGACCTTGAATCGTTCATGCGGACCGATTGGCGACACTTTAACTGCAAAACATGGCACCTGGAACCGACTGTACGACTCCTTTCATGGGCTGGCAAATCGATCGAACCGTACGGCATCGACTACATTCTGAACAAGCTTGGATTTAGCCACGCGCGCACCACGATTCCCAAGTGGCTTCAGCGTGGCTTCATGGATCCGCTCGATAAGGTGGAAGCGCTGCTGATGCTGCAGCTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGACAAGGACTCTAGTAGAGATAAATGAAGTGTAAG ]
[+] EMBL BM583630 [ ccGGCAGCGGAACACGAGCCGGTCTGTCGGTGCTAAAATCTGCTCACGCGCTAAAGTCCAGCACCTCCAATCTGATGTCTGCCGCGGCTCCCTCCATGTCGTCGCTCGGTACGCAGGACTCGACCTCCAGCCAATCGATCGCTAATGGTGGCAGTGCGGTAGAGTTGAACGATGCAGGCAGCTCCGGAATTGCTTCCGGTGGAACGGCTTCAACGCTATCCGGCACTAAGAGCGTGCCACGCGCGACAGACGACACGAAGAAAGGACCTGGAAGTACCGTGTCCAGCCCTGCCACATCCATGGGTGGGGTAGGGGGTAAGCAGGTAAATATTGTGGTAGAAAAATCGGACCTTGAATCGTTCATGCGGACCGATTGGCGACACTTTAACTGCAAAACATGGCACCTGGAACCGACTGTACGACTCCTTTCATGGGCTGGCAAATCGATCGAACCGTACGGCATCGACTACATTCTGAACAAGCTCGGATTTAGCCACGCGCGCACCACGATTCCCAAGTGGCTTCAGCGTGGCTTCATGGATCCGCTCGATAAGGTGGAAGCGCTGCTGATGCTGCAGCTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGACAAGGACTCTAGTAGAGATAAATGAAGTGTAAGTGTAAGTGCAAGGTGCTAGAGCAGGG ]
[+] EMBL BM637741 [ GAAGTACCGTGTCCAGCCCTGCCACATCCATGGGTGGGGTAGGGGGTAAGCAGGTAAATATTGTGGTAGAAAAATCGGACCTTGAATCGTTCATGCGGACCGATTGGCGACACTTTAACTGCAAAACATGGCACCTGGAACCGACTGTACGACTCCTTTCATGGGCTGGCAAATCGATCGAACCTTACGGCATCGACTACATTCTGAACAAGCTTGGATTTAGCCACGCGCGCACCACGATTCCCAAGTGGCTTCAGCGTGGCTTCATGGATCCGCTCGATAAGGTGGAAGCGCTGCTGATGCTGCAGCTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGACAAGGACTCTAGTAGAGATAAATGAAGTGTAAGTGTAAGTGCAAGGTG ]
[+] EMBL BX615057 [ GAACAAGCTTGGATTTAGCCACGCGCGCACCACGATTCCCAAGTGGCTTCAGCGTGGCTTCATGGATCCGCTCGATAAGGTGGAAGCGCTGCTGATGCTGCAGCTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGACAAGGACTCTAGTAGAGATAAATGAAATGTAAGTGTAAGTGCAAGGTGCTAGAGCAGGGAGCGCAAGGGCTTGGGAAAGACACAAACATTGCCCGTGCCGGTGATGCGTTTTGTGGAATGTGTGGTACAATCTAATGTCTAACTATTGTTGCTTTTTTATAGCTTCCTAGCTATACAAACCCGTTGCCGCGTGGCACGTATGTGCACCGGTTCAGTATTAGAACGCATTTAAACTTTCCACGTAGGGATTTGATATTTGACGTACTCTTTTTCATCCAACGAACCAAAACAGGTCCGTCGCTGTGTTGCGCGGAATCTTTACTCTTTGTTTATCGTGTTTATCTCAACGTCTGCTCAACTATAACTATCCTTCTGTGTTATGCTTTGTTTTTTTTTTTGCTCGCAACCATGTGCAGCC ]
[+] EMBL BX608289 [ CGATTCCCAAGTGGCTTCAGCGTGGCTTCATGGATCCGCTCGATAAGGTGGAAGCGCTGCTGATGCTGCAGCTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGACAAGGACTCTAGTAGAGATAAATGAAATGTAAGTGTAAGTGCAAGGTGCTAGAGCAGGGAGCGCAAGGGCTTGGGAAAGACACAAACATTGCCCGTGCCGGTGATGCGTTTTGTGGAATGTGTGGTACAATCTAATGTCTAACTATTGTTGCTTTTTTATAGCTTCCTAGCTATACAAACCCGTTGCCGCGTGGCACGTATGTGCACCGGTTCAGGATTAGAACGCATTTAAACTTTCCACGTAGGGATTTGATATTTGACGTACTCTTTTTCATCCAACGAACCAAAACAGGTCCGTCGCTGTGTTGCGCGGAATCTTTACTCTTTGTTTATCGTGTTTATCTCAACGTCTGCTCAACTATAACTATCCTTCTGTGTTATGCTTTGTTTTTTTTTTTGCTCGCAACCATGTGCAGCCCGTAACCGTGATCTAGTCTAAATTGGTATGTTATCTTCAGAACATACGGTTTGCTGAAACCCACCCCAACTGCTGCTATTAATGGACATGATATTCAAAGTATGGTATGGCTCTATTGAACCGTGCTTTCGATACCATTTTCCCCTCTCGAAGGGACATTACAGTTCCTGCGACGTACCCATCGATATGGCTTCTCTA ]
[+] EMBL BX626348 [ ATAATGGCACATCGGACGACAAGGACTCTAGTAGAGATAAATGAAATGTAAGTGTAAGTGCAAGGTGCTAGAGCAGGGAGCGCAAGGGCTTGGGAAAGACACAAACATTGCCCGTGCCGGTGATGCGTTTTGTGGAATGTGTGGTACAATCTAATGTCTAACTATTGTTGCTTTTTTATAGCTTCCTAGCTATACAAACCCGTTGCCGCGTGGCACGTATGTGCACCGGTTCAGGATTAGAACGCATTTAAACTTTCCACGTAGGGATTTGATATTTGACGTACTCTTTTTCATCCAACGAACCAAAACAGGTCCGTCGCTGTGTTGCGCGGAATCTTTACTCTTTGTTTATCGTGTTTATCTCAACGTCTGCTCAACTATAACTATCCTTCTGTGTTATGCTTTGTTTTTTTTTTTGCTCGCAACCATGTGCAGCCCGTAACCGTGATCTAGTCTAAATTGGTATGTTATCTTCAGAACATACGGTTTGCTGAAACCCACCCCAACTGCTGCTATTAATGGACATGATATTCAAAGTATGGTATGGCTCTATTGAACCGTGCTTTCGATACCATTTTCCCCTCTCGAAGGGACATTACAGTTCCTGCGACGTACCCATCGATATGGCTTCTCTAATATCCNGTTTAATGAGGATAGCGAATTACACTACTCGCGTATCTGGNGCATGTAGCCTC ]
[+] EMBL BX614627 [ ACATTGCCCGTGCCGGTGATGCGTTTTGTGGAATGTGTGGTACAATCTAATGTCTAACTATTGTTGCTTTTTTATAGCTTCCTAGCTATACAAACCCGTTGCCGCGTGGCACGTATGTGCACCGGTTCAGGATTAGAACGCATTTAAACTTTCCACGTAGGGATTTGATATTTGACGTACTCTTTTTCATCCAACGAACCAAAACAGGTCCGTCGCTGTGTTGCGCGGAATCTTTACTCTTTGTTTATCGTGTTTATCTCAACGTCTGCTCAACTATAACTATCCTTCTGTGTTATGCTTTGTTTTTTTTTTTGCTCGCAACCATGTGCAGCCCGTAACCGTGATCTAGTCTAAATTGGTATGTTATCTTCAGAACATACGGTTTGCTGAAACCCACCCCAACTGCTGCTATTAATG ]
[+] EMBL BX617057 [ ATTAGAACGCATTTAAACTTTCCACGTAGGGATTTGATATTTGACGTACTCTTTTTCATCCAACGAACCAAAACAGGTCCGTCGCTGTGTTGCGCGGAATCTTTACTCTTTGTTTATCGTGTTTATCTCAACGTCTGCTCAACTATAACTATCCTTCTGTGTTATGCTTTG TTTTTTTTTTGCTCGCAACCATGTGCAGCCCGTAACCGTGATCTAGTCTAAATTGGTATGTTATCTTCAGAACATACGGTTTGCTGAAACCCACCCCAACTGCTGCTATTAATGGACATGATATTCAAAGTATGGTATGGCTCTATTGAACCGTGCTTTCGATACCATTTTCCCCTCTCGAAGGGACATTACAGTTCCTGCGACGTACCCATCGATATGGCTTCTCTAATATCCTGTTTAATGAGGATAGCGAATTACACTACTCGCGTATCTGGTGCATGTAGCCTCCTCCTCTCCACAAAACCAAGACATTACAATAACGAGACATAACGATCATCAATAATCGATTAATAATTAAACAAGAAATAAAAAAAATGTGATCTACATAATAATATCAAGCC]
consensusID : consensus_8030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence
[GCAGATCGGACGAGGGATGTAAGGACTGGAAGCACGTGTCCAGCCCTGCCACATCTATGGTGGGGTAGGGGGTAAGCAGGTAAATATTGTGGTAGAAAAATCGGACCTTGAATCGTTCATGCGGACCGATTGGCGACACTTTAACTGCAAAACATGGCATCTGGAACCGACTGTACGACTCCTTTCATGGGCTGGCAAATCGATCGAACCGTACGGCATCGACTACATTCTGAACAAGCTTGGATTTAGCCACGCGCGCACCACGATTCCCAAGGTGGCTTCAGCGGTGGCTTCATGGATCCGCTCGATAAGGTGGAATCGCTGCTGATGCTGCAGGCTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGAGCAAGGGACTNCTAGGTAGAAGATANCANGTGAAATGTAAGGTGTAAGGTGCAGAGGNGCTAGGAGCAGGGAGCGCAAGGGCTTGGGGAAAGACACAAACATATGCGCCGNTGTCCGGGTGATGCGTATATNGCAGTGGCA]
[+] EMBL BX466326 [GCAGATCGGACGAGGGATGTAAGGACTGGAAGCACGTGTCCAGCCCTGCCACATCTATGGTGGGGTAGGGGGTAAGCAGGTAAATATTGTGGTAGAAAAATCGGACCTTGAATCGTTCATGCGGACCGATTGGCGACACTTTAACTGCAAAACATGGCATCTGGAACCGACTGTACGACTCCTTTCATGGGCTGGCAAATCGATCGAACCGTACGGCATCGACTACATTCTGAACAAGCTTGGATTTAGCCACGCGCGCACCACGATTCCCAAGGTGGCTTCAGCGGTGGCTTCATGGATCCGCTCGATAAGGTGGAATCGCTGCTGATGCTGCAGGCTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGAGCAAGGGACTNCTAGGTAGAAGATANCANGTGAAATGTAAGGTGTAAGGTGCAGAGGNGCTAGGAGCAGGGAGCGCAAGGGCTTGGGGAAAGACACAAACATATGCGCCGNTGTCCGGGTGATGCGTATATNGCAGTGGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8030#0 CCGATCCCGTCAATGTAACGCCACCACCACCTGGCAGCGGAACACAAGCCGGCCTGTCGG 60
consensus_8030#1 ------------------------------------------------------------
consensus_8030#0 TGTTAAAGTCTGCTCACGCGCTAAAGTCCAGCACCTCCAATCTGATGTCTGCCGCGGCTC 120
consensus_8030#1 ------------------------------------------------------------
consensus_8030#0 CCTCCATGTCGTCGCTCGGTACGCAGGACTCGACCTCCAGCCAATCGATCGCTAATGGTG 180
consensus_8030#1 ------------------------------------------------------------
consensus_8030#0 GCAGTGCGGTAGAGTTGAACGATGCAGGCAGCTCCGGAATTGCTTCCGGTGGAACGGCTA 240
consensus_8030#1 ------------------------------------------------------------
consensus_8030#0 CAACGCTATCCGGCACTAAGAGCGTGCCACGCGCGACAGACGACACGAAGAAAGGACCTG 300
consensus_8030#1 ------------------------------GCAGATCGGACGA-GGGATGTAAGGAC-TG 28
** * ***** ** * ****** **
consensus_8030#0 GAAGTACCGTGTCCAGCCCTGCCACATCCATGGGTGGGGTAGGGGGTAAGCAGGTAAATA 360
consensus_8030#1 GAAGCAC-GTGTCCAGCCCTGCCACATCTATGG-TGGGGTAGGGGGTAAGCAGGTAAATA 86
**** ** ******************** **** **************************
consensus_8030#0 TTGTGGTAGAAAAATCGGACCTTGAATCGTTCATGCGGACCGATTGGCGACACTTTAACT 420
consensus_8030#1 TTGTGGTAGAAAAATCGGACCTTGAATCGTTCATGCGGACCGATTGGCGACACTTTAACT 146
************************************************************
consensus_8030#0 GCAAAACATGGCACCTGGAACCGACTGTACGACTCCTTTCATGGGCTGGCAAATCGATCG 480
consensus_8030#1 GCAAAACATGGCATCTGGAACCGACTGTACGACTCCTTTCATGGGCTGGCAAATCGATCG 206
************* **********************************************
consensus_8030#0 AACCGTACGGCATCGACTACATTCTGAACAAGCTTGGATTTAGCCACGCGCGCACCACGA 540
consensus_8030#1 AACCGTACGGCATCGACTACATTCTGAACAAGCTTGGATTTAGCCACGCGCGCACCACGA 266
************************************************************
consensus_8030#0 TTCCCAAG-TGGCTTCAGCG-TGGCTTCATGGATCCGCTCGATAAGGTGGAAGCGCTGCT 598
consensus_8030#1 TTCCCAAGGTGGCTTCAGCGGTGGCTTCATGGATCCGCTCGATAAGGTGGAATCGCTGCT 326
******** *********** ******************************* *******
consensus_8030#0 GATGCTGCAG-CTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGAC--AAGGACTC 655
consensus_8030#1 GATGCTGCAGGCTGCTTCTGATGGTAAAGGATAATGGCACATCGGACGAGCAAGGGACTN 386
********** ************************************** * *****
consensus_8030#0 T--AGTAGAG----ATAAATGAAGTGTAAG-TGTAAG-TGCA-AGGTGCTAG-AGCAGGG 705
consensus_8030#1 CTAGGTAGAAGATANCANGTGAAATGTAAGGTGTAAGGTGCAGAGGNGCTAGGAGCAGGG 446
***** * **** ****** ****** **** *** ***** *******
consensus_8030#0 AGCGCAAGGGCTTGGG-AAAGACACAAACAT---TGCCCGTGCC--GGTGATGCGTTTTG 759
consensus_8030#1 AGCGCAAGGGCTTGGGGAAAGACACAAACATATGCGCCGNTGTCCGGGTGATGCGTATAT 506
**************** ************** *** ** * ********** *
consensus_8030#0 TGGAATGTGTGGTACAATCTAATGTCTAACTATTGTTGCTTTTTTATAGCTTCCTAGCTA 819
consensus_8030#1 NGCAGTG-GCA------------------------------------------------- 516
* * ** *
consensus_8030#0 TACAAACCCGTTGCCGCGTGGCACGTATGTGCACCGGTTCAGGATTAGAACGCATTTAAA 879
consensus_8030#1 ------------------------------------------------------------
consensus_8030#0 CTTTCCACGTAGGGATTTGATATTTGACGTACTCTTTTTCATCCAACGAACCAAAACAGG 939
consensus_8030#1 ------------------------------------------------------------
consensus_8030#0 TCCGTCGCTGTGTTGCGCGGAATCTTTACTCTTTGTTTATCGTGTTTATCTCAACGTCTG 999
consensus_8030#1 ------------------------------------------------------------
consensus_8030#0 CTCAACTATAACTATCCTTCTGTGTTATGCTTTGTTTTTTTTTTTGCTCGCAACCATGTG 1059
consensus_8030#1 ------------------------------------------------------------
consensus_8030#0 CAGCCCGTAACCGTGATCTAGTCTAAATTGGTATGTTATCTTCAGAACATACGGTTTGCT 1119
consensus_8030#1 ------------------------------------------------------------
consensus_8030#0 GAAACCCACCCCAACTGCTGCTATTAATGGACATGATATTCAAAGTATGGTATGGCTCTA 1179
consensus_8030#1 ------------------------------------------------------------
consensus_8030#0 TTGAACCGTGCTTTCGATACCATTTTCCCCTCTCGAAGGGACATTACAGTTCCTGCGACG 1239
consensus_8030#1 ------------------------------------------------------------
consensus_8030#0 TACCCATCGATATGGCTTCTCTAATATCCNGTTTAATGAGGATAGCGAATTACACTACTC 1299
consensus_8030#1 ------------------------------------------------------------
consensus_8030#0 GCGTATCTGGNGCATGTAGCCTCCTCCTCTCCACAAAACCAAGACATTACAATAACGAGA 1359
consensus_8030#1 ------------------------------------------------------------
consensus_8030#0 CATAACGATCATCAATAATCGATTAATAATTAAACAAGAAATAAAAAAAATGTGATCTAC 1419
consensus_8030#1 ------------------------------------------------------------
consensus_8030#0 ATAATAATATCAAGCC 1435
consensus_8030#1 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||