These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1423 fasta sequence [CCGGATTGTTTTGGTCTTTGCTCCTCCGGTCGCCTTACGGAGCCGCGGGATAGGCCGCCGAGTCAGCTGTTGACAATTGTCCGCATGGTGGTGGTGGCAGTGGCAAGCTTTCTCCTTATTAGTTAATTAAAACCAAACGAAGCTGTCAACATGCGTGAGCTGTACGACTTAATAACGGGCAAGAATGTTGACCATCAAACGTTCGAAAGCGTCTCGGCGATCATTCAGAAACGTTTCACCAATGCGGGCAACTGGTTCCAGGTCGGATCAGCGCTTGCTTTGCTGCTGCTGCAGAACGATCTCGCCCTTCCCTTTCACCGGCTGGCAGGGATCTACGTGTTGTACGACATCCGCCGCAAGGAGCAGGCGGAATCACCCTTCTTCCTGTTTTTGGCCCGCTTCCTAGAACCGTTCGGTGGACTGCTGCCGGCCAACAGCAGCACCCCCGCACAGATGGTGGAGCTGAAGTTCATTCATCTGCTACTATCGAACGGTGACCCAGACATTGACAAAAAGTCACCCCGCCTGTTCTGCCAAGCGTTTGCCGCAATGCCCACCCCGGTCGGGCCGGCCGAAATTGCGTACGTAAAGGCGAAGGCAGCGGAACGGCTGAAAGATTTCCCCCTCACCGTGCGCTCCAATGTGGCCAACATCATTCCCGCCCTGCCCGTGCTGCCTGGCCGCGAACCGGCACTGAAAAACTACACCGGAGCGGCCATCGAGGAGCTGGTGAACGGGATGACGGCGAACCCGAGCAATCCGCTGCTGAACGCGCTCGGTCCCACGTTCATGTCCGTGGCGCCACCGCTGCTCACGTGTGAGGATGAGCTGATCTGGCTCGATCTGGGCAGCCCCTCGTACCACAAGCCGGTGTACAATAGCTGCAGCGATGCGGAACCAACGCCGGACAAGTGCCTGCAGACGCTGCTGGACCAATCGTTCCGGCAGGCGCTCAGCATTGCCGACCAGCAGACGCTGGTGAACGAGCTGGAGAAGGACACGCAGCAGACGCACCTGTCGTGCGTCACGCCGGAAAAGCTCCCGAACCTGATCGAATACAACCCGACGATTGCGATCGAAATTCTGATGCGTATGCTGAAAACGCGCCACATCGATGCGTACCTGGACGTGATCGTCGACATGTAGCTGTCGCTGCACTCGATGGAGGTGGTGAACCGGCTGACCACGTCGGTCGATCTGCCGGTGCACTTCGTGCATCTGTACATCGTGAACAGCATCGGCACGTGCTCGACGATCCGGGACAAGTACATGCAGAACCGGCTGGTACGGTTGGTGTGCGTGTTCCTGCAGAGCCTGATCCGGAACAAGATCATCGACGTGAAGCAGCTGTACATCGAGATCGAAGCGTTTTGCATCGAGTTTAGCCGGATACGGGAGGCGGCCGCACTGTACCGTTTGCTGA] [+] EMBL BM578727 [CCGGATTGTTTTGGTCTTTGCTCCTCCGGTCGCCTTACGGAGCCGCGGGATAGGCCGCCGAGTCAGCTGTTGACAATTGTCCGCATGGTGGTGGTGGCAGTGGCAAGCTTTCTCCTTATTAGTTAATTAAAACCAAACGAAGCTGCCAACATGCGTGAGCTGTACGACTTAATAACGGGCAAGAATGTTGACCATCAAACGTTCGAAAGCGTCTCGGCGATCATTCAGAAACGTTTCACCAATGCGGGCAACTGGTTCCAGGTCGGATCAGCGCTTGCTTTGCTGCTGCTGCAGAACGATCTCGCCCTTCCCTTTCACCGGCTGGCAGGGATCTACGTGCTGTACGACATCCGCCGCAAGGAGCAGGCGGAATCACCCTTCTTCCTGTTTTTGGCCC ] [+] EMBL BX623101 [ TGGTGTTTGCTCCTCCGGTCGCCTTACGGAGCCGCGGGATAGGCCGCCGAGTCAGCTGTTGACAATTGTCCGCATGGTGGTGGTGGCAGTGGCAAGCTTTCTCCTTATTAGTTAATTAAAACCAAACGAAGCTGTCAACATGCGTGAGCTGTACGACTTAATAACGGGCAAGAATGTTGACCATCAAACGTTCGAAAGCGTCTCGGCGATCATTCAGAAACGTTTCACCAATGCGGGCAACTGGTTCCAGGTCGGATCAGCGCTTGCTTTGCTGCTGCTGCAGAACGATCTCGCCCTTCCCTTTCACCGGCTGGCAGGGATCTACGTGTTGTACGACATCCGCCGCAAGGAGCAGGCGGAATCACCCTTCTTCCTGTTTTTGGCCCGCTTCCTAGAACCGTTCGGTGGACTGCTGCCGGCCAACAGCAGCACCCCCGCACAGATGGTGGAGCTGAAGTTCATTCATCTGCTACTATCGAACGGTGACCCAGACATTGACAAAAAGTCACCCCGCCTGTTCTGCCAAGCGTTTGCCGCAATGCCCACCCCGGTCGGGCCGGCCGAAATTGCGTACGTAAAGGCGAAGGCAGCGGAACGGCTGAAAGATTTCCCCCTCACCGTGCGCTCCAATGTGGNCAACATCATTCCCGCCCTGCCCGTGCTGCCTGGNCGCGAACCGGCACTGAAAAACTACACCGGAGCGGCCATCGAGGAGCTGGTGAACGGGATGACGGCGAACCCGAGCAATCCGCTGCT ] [+] EMBL CNS08FE1 [ CGGTCGCCTTACGGA CCGCGGGATAGGCCGCCGAGTCAGCTGTTGACAATTGTCCGCATGGTGGTGGTGGCAGTGGCAAGCTTTCTCCTTATTAGTTAATTAAAACCAAACGAAGCTGTCAACATGCGTGAG TGTACGACTTAATAACGGGCAAGAATGTTGACCATCAAACGTTCGAAAGCGTCTCGGCGATCATTCAGAAACGTTTCACCAATGCGGGCAACTGGTTCCAGGTCGGATCAGCGCTTGCTTTGCTGCTGCTGCAGAACGATCTCGCCCTTCCCTTTCACCGGCTGGCAGGGATCTACGTGTTGTACGACATCCGCCGCAAGGAGCAGGCGGAATCACCCTTCTTCCTGTTTTTGGCCCGCTTCCTAGAACCGTTCGGTGGACTGCTGCCGGCCAACAGCAGCACCCCCGCACAGATGGTGGAGCTGAAGTTCATTCATCTGCTACTATCGAACGGTGACCCAGACATTGACAAAAAGTCACCCCGCCTGTTCTGCCAAGCGTTTGCCGCAATGCCCACCCCGGTCGGGCCGGCCGAAATTGCGTACGTAAAGGCGAAGGCAGCGGAACGGCTGAAAGATTTCCCCCTCACCGTGCGCTCCAATGTGGCCAACATCATTCCCGCCCTGCCCGTGCTGCCTGGCCGCGAACCGGCACTGAAAAACTACACCGGAGCGGCCATCGAGGAGCTGGTGAACGGGATGACGGCGAACCCGAGCAATCCGCTGCTGAACGCGCTCGGTCCCACGTTCATGTCCGTGGCGCCACCGCTGCTCACGTGTGAGGATGAGCTGATCTGGCTCGATCTGGGCAGCCCCTCGTACCACAAGCCGGTGTACAATAGCTGCAGCGATGCGGAACCAACGCCGGACAAGTGCCTGCAGACGCTGCTGGACCAATCGTTCCGGCAGGCGCTCAGCATTGCCGACCAGC ] [+] EMBL CNS09056 [ AAGCTGTCAACATGCGTGA CTGTACGACTTAATAACGGGCAAGAATGTTGACCATCAAACGTTCGAAAGCGTCTCGGCGATCATTCAGAAACGTTTCACCAATGCGGGCAACTGGTTCCAGGTCGGATCAGCGCTTGCTTTGCTGCTGCTGCAGAACGATCTCGCCCTTCCCTTTCACCGGCTGGCAGGGATCTACGTGTTGTACGACATCCGCCGCAAGGAGCAGGCGGAATCACCCTTCTTCCTGTTTTTGGCCCTCTTGCTA ] [+] EMBL BM617539 [ ccgAGCACCCCCGCACAGATGGTGGAGCTGAAGTTCATTCATCTGCTACTATCGAACGGTGATCCAGACATTGACAAAAAGTCACCCCGCCTGTTCTGCCAAGCGTTTGCCGCAATGCCCACCCCGGTCGGGCCGGCCGAAATTGCGTACGTAAAGGCGAAGGCAGCGGAACGGCTGAAAGATTTCCCCCTCACCGTGCGCTCCAATGTGGCCAACATCATTCCCGCCCTGCCCGTGCTGCCTGGCCGCGAACCGGCACTGAAAAACTACACCGGAGCGGCCATCGAGGAGCTGGTGAACGGGATGACGGCGAACCCGAGCAATCCGCTGCTGAACGCGCTCGGTCCCACGTTCATGTCCGTGGCGCCACCGCTGCTCACGTGTGAGGATGAGCTGATCTGGCTCGATCTGGGCAGCCCCTCGTACCACAAGCCGGTGTACAATAGCTGCAGCGATGCGGAACCAACGCCGGACAAGTGTCTGCAGACGCTGCTGGACCAATCGTTCCGGCAGGCGCTCAGCATTGCCGACCAGCAGACGCTGGTGAACGAGCTGGAGAAGGACACGCAGCAGACGCACCTGTCGTGCGTCACGCCGGAAAAGCTCCCGAACCTGATCGAATACAACCCGACGATTGCGATCGAAATTCTGATGCGTATGCTGAAAACGCGCC ] [+] EMBL BX608497 [ CGTGCGCTCCAATGTGGCCAACATCATTCCCGCCCTGCCCGTGCTGCCTGGCCGCGAACCGGCACTGAAAAACTACACCGGAGCGGCCATCGAGGAGCTGGTGAACGGGATGACGGCGAACCCGAGCAATCCGCTGCTGAACGCGCTCGGTCCCACGTTCATGTCCGTGGCGCCACCGCTGCTCACGTGTGAGGATGAGCTGATCTGGCTCGATCTGGGCAGCCCCTCGTACCACAAGCCGGTGTACAATAGCTGCAGCGATGCGGAACCAACGCCGGACAAGTGCCTGCAGACGCTGCTGGACCAATCGTTCCGGCAGGCGCTCAGCATTGCCGACCAGCAGACGCTGGTGAACGAGCTGGAGAAGGACACGCAGCAGACGCACCTGTCGTGCGTCACGCCGGAAAAGCTCCCGAACCTGATCGAATACAACCCGACGATTGCGATCGAAATTCTGATGCGTATGCTGAAAACGCGCCACATCGATGCGTACCTGGACGTGATCGTCGACATGTAGCTGTCGCTGCACTCGATGGAGGTGGTGAACCGGCTGACCACGTCGGTCGATCTGCCGGTGCACTTCGTGCATCTGTACATCGTGAACAGCATCGGCACGTGCTCGACGATCCGGGACAAGTACATGCAGAACCGGCTGGTACGGTTGGTGTGCGTGTTCCTGCAGAGCCTGATCCGGAACAAGATCATCGACGTGAAGC ] [-] EMBL CNS09057 [ TGCATCTGTACATCGTGAACAGCATCGGCACGTGCTCGACGATCCGGGACAAGTACATGCAGAACCGGCTGGTACGGTTGGTGTGCGTGTTCCTGCAGAGCCTGATCCGGAACAAGATCATCGACGTGAAGCAGCTGTACATCGAGATCGAAGCGTTTTGCATCGAGTTTAGCCGGATACGGGAGGCGGCCGCACTGTACCGTTTGCTGA] [-] EMBL CNS08FE2 [ TGTACATCGTGAACAGCATCGGCACGTGCTCGACGATCCGGGAAAAGTACATGCAGAACCGGCTGGTACGGTTGGTGTGCGTGTTCCTGCAGAGCCTGATCCGGAACAAGATCATCGACGTGAAGCAGCTGTACATCGAGATCGAAGCGTTTTGCATCGAGTTTAGCCGGATACGGGAGGCGGCCGCACTGTACCGGTTG ] consensusID : consensus_8045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 110 fasta sequence [CAGAATCCCCCGAGGTNAACGAAGGGGATGTTGGTGTATGCTCCTCCGGTCGCCTTACGGAGCCGCGGGATAGCCGCCGAGTCAGCTGTTGGACAATTGTCGCCAAATTT] [+] EMBL AL933401 [CAGAATCCCCCGAGGTNAACGAAGGGGATGTTGGTGTATGCTCCTCCGGTCGCCTTACGGAGCCGCGGGATAGCCGCCGAGTCAGCTGTTGGACAATTGTCGCCAAATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8045#0 --------------------CCGGATTGTTTTGGTCTTTGCTCCTCCGGTCGCCTTACGG 40 consensus_8045#1 CAGAATCCCCCGAGGTNAACGAAGGGGATGTTGGTGTATGCTCCTCCGGTCGCCTTACGG 60 * * ***** * ********************** consensus_8045#0 AGCCGCGGGATAGGCCGCCGAGTCAGCTGTTG-ACAATTGTCCGCATGGTGGTGGTGGCA 99 consensus_8045#1 AGCCGCGGGATAG-CCGCCGAGTCAGCTGTTGGACAATTGTCGCCAAATTT--------- 110 ************* ****************** ********* ** * consensus_8045#0 GTGGCAAGCTTTCTCCTTATTAGTTAATTAAAACCAAACGAAGCTGTCAACATGCGTGAG 159 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 CTGTACGACTTAATAACGGGCAAGAATGTTGACCATCAAACGTTCGAAAGCGTCTCGGCG 219 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 ATCATTCAGAAACGTTTCACCAATGCGGGCAACTGGTTCCAGGTCGGATCAGCGCTTGCT 279 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 TTGCTGCTGCTGCAGAACGATCTCGCCCTTCCCTTTCACCGGCTGGCAGGGATCTACGTG 339 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 TTGTACGACATCCGCCGCAAGGAGCAGGCGGAATCACCCTTCTTCCTGTTTTTGGCCCGC 399 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 TTCCTAGAACCGTTCGGTGGACTGCTGCCGGCCAACAGCAGCACCCCCGCACAGATGGTG 459 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 GAGCTGAAGTTCATTCATCTGCTACTATCGAACGGTGACCCAGACATTGACAAAAAGTCA 519 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 CCCCGCCTGTTCTGCCAAGCGTTTGCCGCAATGCCCACCCCGGTCGGGCCGGCCGAAATT 579 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 GCGTACGTAAAGGCGAAGGCAGCGGAACGGCTGAAAGATTTCCCCCTCACCGTGCGCTCC 639 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 AATGTGGCCAACATCATTCCCGCCCTGCCCGTGCTGCCTGGCCGCGAACCGGCACTGAAA 699 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 AACTACACCGGAGCGGCCATCGAGGAGCTGGTGAACGGGATGACGGCGAACCCGAGCAAT 759 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 CCGCTGCTGAACGCGCTCGGTCCCACGTTCATGTCCGTGGCGCCACCGCTGCTCACGTGT 819 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 GAGGATGAGCTGATCTGGCTCGATCTGGGCAGCCCCTCGTACCACAAGCCGGTGTACAAT 879 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 AGCTGCAGCGATGCGGAACCAACGCCGGACAAGTGCCTGCAGACGCTGCTGGACCAATCG 939 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 TTCCGGCAGGCGCTCAGCATTGCCGACCAGCAGACGCTGGTGAACGAGCTGGAGAAGGAC 999 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 ACGCAGCAGACGCACCTGTCGTGCGTCACGCCGGAAAAGCTCCCGAACCTGATCGAATAC 1059 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 AACCCGACGATTGCGATCGAAATTCTGATGCGTATGCTGAAAACGCGCCACATCGATGCG 1119 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 TACCTGGACGTGATCGTCGACATGTAGCTGTCGCTGCACTCGATGGAGGTGGTGAACCGG 1179 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 CTGACCACGTCGGTCGATCTGCCGGTGCACTTCGTGCATCTGTACATCGTGAACAGCATC 1239 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 GGCACGTGCTCGACGATCCGGGACAAGTACATGCAGAACCGGCTGGTACGGTTGGTGTGC 1299 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 GTGTTCCTGCAGAGCCTGATCCGGAACAAGATCATCGACGTGAAGCAGCTGTACATCGAG 1359 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 ATCGAAGCGTTTTGCATCGAGTTTAGCCGGATACGGGAGGCGGCCGCACTGTACCGTTTG 1419 consensus_8045#1 ------------------------------------------------------------ consensus_8045#0 CTGA 1423 consensus_8045#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||