These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8051#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 672 fasta sequence [CCGCCCCCG-CGATCATGGCAGCGAAAGGACGATTGTCTGGGCGGTGCATTGTGTCAATAGCCGCCGTACTGCTGCTTCCGGCATCATGTATCGCACAATCGTCGAGCACTTACGGCGACACCGGCACTGATACGGTACCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGCAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAAC-GGCGGAGAGCCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGC-GGCTCGAAACGATCGAAAACGGACTGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCGGCACGTCCGATATA-CGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGA-TA-TG-TT-TG-AAGAACAGCGATCGCGTGCCAGAGCTCGAGCG-ATGGCTCATC-AACAAAGGGAACA-GTCCGTGTTCGA----CCGCGTTTA--CGAC-TCG-TGTGAC-GATGTG-CCGAGCTCGGGCA-CGT-GG-A-AGATTCGACAAGGTACACAGATAGCAAACGTACACTGTATCAAGTTCTAAACGTCGGCCTTAATCCATTCAT-TCTACAAATAAAAGATGGGAAATAATGATC] [+] EMBL BM591534 [CCGCCCACG CG TCCGGGCAGCGAAAGGACGATTGTCTGGGCGGTGCATTGTGTCAATAGCCGCCGTACTGCTGCTTCCGGCATCATGTATCGCACAATCGTCGAGCACTTACGGCGACACCGGCACTGATACGGTACCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGCAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAAC GGCGGAGAGCCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGC GGCTCGAAACGATCGAAAACGGACTGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCGGCACGTCCGATATA CGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGA TA TG TT TG AAGAACAGCGATCGCGTGCCAGAGCTCGAGCG ATGGCTCATC AACAAAGGGAACA GTCCGTGTTCGA CCGCGTTTA CGAC TCG TGTGAC GATGTG CCGAGCTCGGGCA CGT GG A AGATTCGACAAGGTACACAGATAGCAAACGTACACTGTATCAAGTTCTAAACGTCGGCCT ] [+] EMBL AL931740 [ CCCCG AGGT TGGCAGCGAAAGGACGATTGTCTGGGCGGTGCATTGTGTCAATAGCCGCCGTACTGCTGCTTCCGG CATGTATCGCACAATCGTCGAGCACTTACGGCGACACCGGCACTGATACGGTACCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGCAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAAC GGCGGAGAGCCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGC GGCTCGAAACGATCGAAAACGGACTGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCAGCACGTCCGATATA CGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGA TA TG TT TG AAGAACAGCG ] [+] EMBL AL693744 [ gCCCGAGGNTTATGGCAGCGAAAGGACGATTGTCTGGGCGGTGCATTGTGTCAATAGCCGCCGTACTGCTGCTTCCGGCATCATGTATCGCACAATCGTCGAGCACTTACGGCGACACCGGCACTGATACGGTACCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGCAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAACTGGCGGAGAGCCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGCTGGCTCGAAACGATCGAAAACGGACTGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCGGCACGTCCGATATACCGATCAAGCACCGCTAACTCCAGCATACAGTGCACGG CGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGACTACTGCTTCTGAAAGAACAGCGATCGCGTGCCAGAGCTCGAGCGCATGGCTCATCAAACAAAGGGAACACGTCCGTGTTCGAACCGCCGCTTTTACNCGACATCGNTGTGACGGATGTGCCCGAGCTCGGGCACCGTCGGCACAGAT ] [+] EMBL BM627527 [ CCG CGATCATGGCAGCGAAAGGACGATTGTCTGGGCGGTGCATTGTGTCAATAGCCGCCGTACTGCTGCTTCCGGCATCATGTATCGCACAATCGTCGAGCACTTACGGCGACACCGGCACTGATACGGTACCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGCAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAAC GGCGGAGAGCCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGC GGCTCGAAACGATCGAAAACGGACTGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCGGCACGTCCGATATA CGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGA TA TG TT TG AAGAACAGCGATCGCGTGCCAGAGCTCGAGCG ATGGCTCATC AACAAAGGGAACA GTCCGTGTTCGA CCGCGTTTA CGAC TCG TGTGAC GATGTG CCGAGCTCGGGCA CGT GG A AGATTCGACAAGGTACACAGATAGCAAACGTACACTGTATCAAGTTCTAAACGTCGGCCTTAATCCATT ] [+] EMBL BM584125 [ CCG CGATCATGGCAGCGAAAGGACGATTGTCTGGGCGGTGCATTGTGTCAATAGCCGCCGTACTGCTGCTTCCGGCATCATGTATCGCACAATCGTCGAGCACTTACGGCGACACCGGCACTGATACGGTACCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGCAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAAC GGCGGAGAGCCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGC GGCTCGAAACGATCGAAAACGGACTGAACGCAATGCCTCAATCACCAGCCATTTCCATGTCGGCACGTCCGATATA CGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGA TA TG TT TG AAGAACAGCGATCGCGTGCCAGAGCTCGAGCG ATGGCTCATC AACAAAGGGAACA GTCCGTGTTCGA CCGCGTTTA CGAC TCG TGTGAC GATGTG CCGAGCTCGGGCA CGT GG A AGATTCGACAAGGTACACAGATAGCAAACGTACACTGTATCAAGTTCTAAACGTCGGCCTTAATCCATTCAT TCTACAAATAAAAGATGGGAAATAATGATC] [+] EMBL BM644559 [ c CGATCATGGCAGCGAAAGGACGATTGTCTGGGCGGTGCATTGTGTCAATAGCCGCCGTACTGCTGCTTCCGGCATCATGTATCGCACAATCGTCGAGCACTTACGGCGACACCGGCACTGATACGGTACCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGCAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAAC GGCGGAGAGCCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGC GGCTCGAAACGATCGAAAACGGACTGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCGGCACGTCCGATATA CGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGA TA TG TT TG AAGAACAGCGATCGCGTGCCAGAGCTCGAGCG ATGGCTCATC AACAAAGGGAACA GTCCGTGTTCGA CCGCGTTTA CGAC TCG TGTGAC GATGTG CCGAGCTCGGGCA CGT GG A AGATTCGACAAGGTACACAGATAGCAAACGTACACTGTATCAAGTTCTAAACGTCGGGCTTAATC ] [+] EMBL BM642786 [ ccgGCGAAAGGACGATTGTCAGGGCGGTGCATTGTGTCAATAGCCGCCGTACTGCTTCTTCCGG CATGTATCGCACAATCGTCGAGCACTTACGGCGACACCGGCACTGATACGGTGCCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGCAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAAC GGCGGAGAGTCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGC GGCTCGAAACGATCGAAAACGGACTGAATGCAATGCCTCAATCACCAGCCATTTCCATGCCAGCACGTCCGATATA CGATCAAGCACCGCTAACTCCAGCATATAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGATGA TA TG TT TG AAGAACAGCGATCGCGTGCCAGAGCTCGAGCG ATGGCTCATC AACAAAGGGAACA GTCCGTGTTCGA CCGCGTTTA CGAC TCGATGTGAC GATGTG CCGAGCTCGGGCA CGT GG A GAATTCGACAAGGTACACAGATAGCAAACGTACACTGTATCAAGTTCTAAACGTCGGCCTTAATCCATT ATGTCTATAAATAAAATATGAGATATAATGATC] consensusID : consensus_8051#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [GAATCGGCCGAGGATATGGCAGCGAAAGGACGATTGTCAGGGCGGTGCATTGTGTCATAGCCGCGTACTGTCCTTCCGGCATGTATCTGCACAATCGTCGAGCACTTACGGCGACACTGATACGGTGCCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGAAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAACGGCGGAGAGCCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGCGGCTCGAAACGATCGAAAACGGACTGAATGCAATGCCTCAATCACCAGCCATTTCCATGCCAGCACGTCCGATATACGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGATATGTTTGAAGAACAGCGATCGCGTGCCAGAGCTCGAGCGATGGCTCATCAACAAAGGGAACAGTCCGTGTTCGACCGAGTTTACGACTCGTGTGACGATGTGCCGACCTCGGGCACGTGGAAGATTCGACAAGGTACGCAGATATCAAACGTACACTGTATCAAGTTCTAAACGTCGGCTTAATCCATTCATTCTACAAATAAAAAATGGGAAATAATAA] [+] EMBL AL931263 [GAATCGGCCGAGGATATGGCAGCGAAAGGACGATTGTCAGGGCGGTGCATTGTGTCATAGCCGCGTACTGTCCTTCCGGCATGTATCTGCACAATCGTCGAGCACTTACGGCGACACTGATACGGTGCCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGAAATCAGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAACGGCGGAGAGCCGTAGTGCGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGCGGCTCGAAACGATCGAAAACGGACTGAATGCAATGCCTCAATCACCAGCCATTTCCATGCCAGCACGTCCGATATACGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGATATGTTTGAAGAACAGCGATCGCGTGCCAGAGCTCGAGCGATGGCTCATCAACAAAGGGAACAGTCCGTGTTCGACCGAGTTTACGACTCGTGTGACGATGTGCCGACCTCGGGCACGTGGAAGATTCGACAAGGTACGCAGATATCAAACGTACACTGTATCAAGTTCTAAACGTCGGCTTAATCCATTCATTCTACAAATAAAAAATGGGAAATAATAA] consensusID : consensus_8051#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [CCGCCCACGCGTCCGGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCGGCACGTCCGATATACGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGATATGTTTGAAGAACAGCGATCGCGTGCCAGAGCTCGAGCGATGGCTCATCAACAAAGGGAACAGTCCGTGTTCGACCGCGTTTACGACTCGTGTGACGATGTGCCGAGCTCGGGCACGTGGAAGATTCGACAAGGTACACAGATAGCAAACGTACACTGTATCAAGTTCTAAACGTCGGCCTTAATCCATTCATTCTACAAATAAAAGATGGGAAATAATGATC] [+] EMBL BM586110 [CCGCCCACGCGTCCGGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCGGCACGTCCGATATACGATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATATCGACAGGATGAAAGCAGAGGCAGACGATATGTTTGAAGAACAGCGATCGCGTGCCAGAGCTCGAGCGATGGCTCATCAACAAAGGGAACAGTCCGTGTTCGACCGCGTTTACGACTCGTGTGACGATGTGCCGAGCTCGGGCACGTGGAAGATTCGACAAGGTACACAGATAGCAAACGTACACTGTATCAAGTTCTAAACGTCGGCCTTAATCCATTCATTCTACAAATAAAAGATGGGAAATAATGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8051#0 CCGCCCCCGCGATCATGGCAGCGAAAGGACGATTGTCTGGGCGGTGCATTGTGTCAATAG 60 consensus_8051#2 ------------------------------------------------------------ consensus_8051#1 ----------GAATCGGCCGAGGATATGGCAGCGAAAGGACGATTGTCAGGGCGGTGCAT 50 consensus_8051#0 CCGCCGTACTGCTGCTTCCGGCATCATGTATCGCACAATCGTCGAGCACTTACGGCGACA 120 consensus_8051#2 ------------------------------------------------------------ consensus_8051#1 TGTGTCATAGCCGCGTACTGTCCTTCCGGCATGTATCTGCACAATCGTCGAGCACTTACG 110 consensus_8051#0 CCGGCACTGATACGGTACCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGCAATC 180 consensus_8051#2 ------------------------------------------------------------ consensus_8051#1 GCGACACTGATACGGTGCCGCAAAGGTCAAGTGGCTTCGGGTACGAGCTAATCCGAAATC 170 consensus_8051#0 AGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAACGGCGGAGAGCCGTAGTG 240 consensus_8051#2 ------------------------------------------------------------ consensus_8051#1 AGCTCGAGGAAATGCAAGATAGCATCACACAGCTGCAGCAAACGGCGGAGAGCCGTAGTG 230 consensus_8051#0 CGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGCGGCTCGAAACGATCGAAA 300 consensus_8051#2 --------------------------------------------------CCGCCC--AC 8 consensus_8051#1 CGTGTGCCGGACTGGAAGCCAACATTGCCACCATACTGAGGCGGCTCGAAACGATCGAAA 290 ** * * consensus_8051#0 ACGGACTGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCGGCACGTCCGATATACG 360 consensus_8051#2 GCGTCCGGAACGCAATGCCTCAATCACCAGCCATTTCCATGCCGGCACGTCCGATATACG 68 consensus_8051#1 ACGGACTGAATGCAATGCCTCAATCACCAGCCATTTCCATGCCAGCACGTCCGATATACG 350 ** * *** ******************************** **************** consensus_8051#0 ATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATA 420 consensus_8051#2 ATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATA 128 consensus_8051#1 ATCAAGCACCGCTAACTCCAGCATACAGTGCACGGCCGTCAAGAGGCCGTACCATCGATA 410 ************************************************************ consensus_8051#0 TCGACAGGATGAAAGCAGAGGCAGACGATATGTTTGAAGAACAGCGATCGCGTGCCAGAG 480 consensus_8051#2 TCGACAGGATGAAAGCAGAGGCAGACGATATGTTTGAAGAACAGCGATCGCGTGCCAGAG 188 consensus_8051#1 TCGACAGGATGAAAGCAGAGGCAGACGATATGTTTGAAGAACAGCGATCGCGTGCCAGAG 470 ************************************************************ consensus_8051#0 CTCGAGCGATGGCTCATCAACAAAGGGAACAGTCCGTGTTCGACCGCGTTTACGACTCGT 540 consensus_8051#2 CTCGAGCGATGGCTCATCAACAAAGGGAACAGTCCGTGTTCGACCGCGTTTACGACTCGT 248 consensus_8051#1 CTCGAGCGATGGCTCATCAACAAAGGGAACAGTCCGTGTTCGACCGAGTTTACGACTCGT 530 ********************************************** ************* consensus_8051#0 GTGACGATGTGCCGAGCTCGGGCACGTGGAAGATTCGACAAGGTACACAGATAGCAAACG 600 consensus_8051#2 GTGACGATGTGCCGAGCTCGGGCACGTGGAAGATTCGACAAGGTACACAGATAGCAAACG 308 consensus_8051#1 GTGACGATGTGCCGACCTCGGGCACGTGGAAGATTCGACAAGGTACGCAGATATCAAACG 590 *************** ****************************** ****** ****** consensus_8051#0 TACACTGTATCAAGTTCTAAACGTCGGCCTTAATCCATTCATTCTACAAATAAAAGATGG 660 consensus_8051#2 TACACTGTATCAAGTTCTAAACGTCGGCCTTAATCCATTCATTCTACAAATAAAAGATGG 368 consensus_8051#1 TACACTGTATCAAGTTCTAAACGTCGGC-TTAATCCATTCATTCTACAAATAAAAAATGG 649 **************************** ************************** **** consensus_8051#0 GAAATAATGATC 672 consensus_8051#2 GAAATAATGATC 380 consensus_8051#1 GAAATAATAA-- 659 ******** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||