These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8063#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1113 fasta sequence [CGACCCACGCGTCCGATAACAACAAAGCTCGTCCTGCGTGCCGATAATCTGCAACTTTTTCGTGTTTTCTGTACAACCAGCAGCACAATTACGACATTCCAGGGCAATTATTGCAAAGCACCATGTCTGAGGAAACCTCCGACAGCGAAAGTCAAGACATTCAGGAGCACAATGAAACGGTACGGGCACTGTCTGCCGGATTGCTACAGATTTACGAGCCCAAGCTCAGGGAAGTTAAGGAAAACCTGAAGGAACTGA-TAAACAAACAGAACGATCTACAAATTGCAATGACCGGCGAAAAGAATGCTTTCTCCAGCCGGCAGATACAGGAAGTCAACGAAATGGTGCTCAAGACGAAAGCCTACAAAGATAAGGTGGCGCGCATCAAAATGCAAATGCATCAAATTCATCAACGAACAAAGAATCTCAGGGCAAAAGCGTTGGAAATCCAGGAACTCAAAGTGAACCAATGTGCAACGAAGCTGCAACAGCTGCATTACGAAGAAT-CGCTGGTTGCGAACAGTAAACGAACCCCACGGAAATCTTAATCCCGTTTCCCGCTCAAGGCCAGCAGGGAG-CAGTGGAAGTGGTAATCAGCAATCCCAACCCGATTACTGTTTGAAAAACACAAATCGCATTTAATTAACGACATTGATCGGGGGACTTTTGTCCCCCATTCTCCCCACCCC-TCGTTCGAAGACTAAAGACAGAGGCAGGAAGCAAGCAAGACTAATGATGATGCACTGCCCTCTCAACGAAGCAATCTTTTAACACAACAAAGCAACCATAGAACAAGTGGGATGGAATGGAAACGTATAGTGAG--AGCTGTTTGGAAGCGCTAAAAGGTCTCCGTTTTGCAACTTTGTTGCAAAAAAAAAACGAGTGTGTCAACCGTGCCTGAAGGAAGGGTCCATGATTGGTTGGAGTATGTCGTGTTTGTATGATTGCCACACCGATATTGCCAAAACTTAAAACAAAAAGAGGTAAAAACAAATCATAGACGAGTATAATATTTTAT-CTTCCAAAAAAACGTGGGAAAGTTGGGATTTTACCGGTACACTTGTTAAGAGCGCAGG-GAGCGCTAGTAC-GTGAACAATCAAAATAAAGTAAACA] [+] EMBL BM650081 [CGACCCACGCGTCCGATAACAACAAAGCTCGTCCTGCGTGCCGATAATCTGCAACTTTTTCGTGTTTTCTGTACAACCAGCAGCACAATTACGACATTCCAGGGCAATTATTCCAAAGCACCATGTCTGAGGAAACCTCCGACAGCGAAAGTCAAGACATTCAGGAGCACAATGAAACGGTACGGGCACTGTCTGCTGGATTGCTACAGATTTATGAGCCCAAGCTCAGGGAAGTTAAGGAAAACCTGAAGGAACTGA TAAACAAGCAGAACGATCTACAAATTGCAATGACCAGCGAAAAGAATGCTTTCTCCAGCCGGCAGATACAGGAAGTCAACGAAATGGTGCTCAAGACGAAAGCCTACAAAGATAAGGTGACGCGCATTAAAATGCAAATGCATCAAATTCATCAACGAACAAAAAATCTCAGGGCAAAAGCGTTGGAAATCCAGGAACTCAAGGTGAACCAATGTGCAACGAAGCTGCAACAGCTGCATTACGAAGAAT CGCTGGTTGCGAACAGTAAACGAACCCCACGGAAATCTTAATCCCGTTTCCCGCTCAAGGCCAGCAGGGAG CAGTGGAAGTGGTAATCAGCAATCCCAACCCGATTACTGTTTGAAAAACACAAATCGCATTTAATTAACGACATTGATCGGGGGACTTTTGTCCCCCATTCTCCCCACCCCTTGGTTGGAAGACTAAAGACAGAGG ] [+] EMBL CNS08FLG [ AAAGCTCGTCCTGCGTGCCGATAATCTGCAACTTTTTCGTGTTTTCTGTACAACCAGCAGCACAATTACGACATTCCAGGGCAATTATTGCAAAGCACCATGTCTGAGGAAACCTCCGACAGCGAAAGTCAAGACATTCAGGAGCACAATGAAACGGTACGGGCACTGTCTGCCGGATTGCTACAGATTTACGAGCCCAAGCTCAGGGAAGTTAAGGAAAACCTGAAGGAACTGA TAAACAAACAGAACGATCTACAAATTGCAATGACCGGCGAAAAGAAAAAATTCTCCAGCCGGCAGATACAGGAAGTCAACGAAATGGTGCTCAAGACGAAAGCCTACAAAGATAAGGTGGCGCGCATCAAAATGCAAATGCATCAAATTCATCAACGAACAAAGAATCTCAGGGCAAAAGCGTTGGAAATCCAGGAACTCAAAGTGAACCAATGTGCAACGAAGCTGCAACAGCTGCATTACGAAGAAT CGCTGGTTGCGAACAGTAAACGAACCCCACGGAAATCTTAATCCCGTTTCCCGCTCAAGGCCAGCAGGGAG CAGTGGAAGTGGTAATCAGCAATCCCAACCCGATTACTGTTTGAAAAACACAAATCGCATTTAATTAACGACATTGATCGGGGGACTTTTGT CCCCATTCTCCCCACCCC TCGTTCGAAGACTAAAGACAGAGGCAGGAAGCAAGCAAGACTAATGATGATGCACTGCCCTCTCAACGAAGCAATCTTTTAACACAACAAAGCAACCATAGAACAAGTGGGATGGAATGGAAACGTATAGTGAG AGCTGTTTGGAAGCGCTAAAAGGTCTCCGTTTTGCAACTTTGTTGCAAAAAAAAAACGAGTGTGTCAACCGTGCCTGAAGGAAGGGTCCATGATTGGTTGGAGTATGTCGTGTTTGTATGATTGCCACACCGATATTGCCAAAACTTAAAACAAAAAGAGGTAAAAACAAATCATAGACGAGTATAATATTTTAT CTTCCA ] [+] EMBL CNS09QJ3 [ AAGCTCGTCCTGCGTGCCGATAATCTGCAACTTTTTCGTGTTTTCTGTACAACCAGCAGCACAATTACGACATTCCAGGGCAATTATTGCAAAGCACCATGTCTGAGGAAAC CGAAAGTCAAGACATTCAGGAGCACAATGAAACGGTACGGGCACTGTCTGCCGGATTGCTACAGATTTACGAGCCCAAGCTCAGGGAAGTTAAGGAAAACCTGAAGGAACTGATTAAACAAACAGAACGATCTACAAATTGCAATGACCGGCGAAAAGAATGCTTTCTCCAGCCGGCAGATACAGGAA ] [+] EMBL CNS09Q8P [ TGCCGATAATCTGCAACTTTTTCGTGTTTTCTGTACAACCAGCAGCACAATTACGACATTCCAGGGCAATTATTGCAAAGCACCATGTCTGAGGAAACCTCCGACAGCGAAAGTCAAGACATTCAGGAGCACAATGAAACGGTACGGGCACTGTCTGCCGGATTGCTACAGATTTACGAGCCCAAGCTCAGGGAAGTTAAGGAAAACCTGAAGGAACTGA TAAACAAACAGAACGATCTACAAATTGCAATGACCGGCGAAAAGAATGCTTTCTCCAGCCGGCAGATACAGGAAGTCAACGAAATGGTGCTCAAGACGAAAGCCTACAAAGATAAGGTGGCGCGCATCAAAATGCAAATGCATCAAATTCATCAACGAACAAAGAATCTCAGGGCAAAAGCGTTGGAAATCCAGGAACTCAAAGTGAACCAATGTGCAACGAAGCTGCAACAGCTGCATTACGAAGAATGCGCTGGTTGCGAACAGTAAACGAACCCCACGGAAATCTTAATCCCGTTTCCCGCTCAAGGCCAGCAGGGAGCCAGTGGAAGTGGTAATCAGCAATCCCAACCCGATTACTGTTTGAAAAACACAAATCGCATTTAATTAACGACATTGATCGGGGGACTTTTGT CCCCATTCTCCCCACCCC TCGTTCGAAGACTAAAGACAGAGGCAGGAAGCAAGCAAGACTAATGATGATGCACTGCCCTCTCAACGAAGCAATCTTTTAAAAAAAAAAAGCAACCATAGAACAAGTGGGATGGGATGGAAACGTATAGTGAG AGCTGTTTGGAAGCGCTA ] [+] EMBL BM648212 [ ccGCAACTTTTTCGTGTTTTCTGTACGACCAGCAGCACAATTACGACATTCCAGGGCAATTATTGCAAAGCACCATGTCTGAGGAAACCTCCGACAGCGAAAGTCAAGACATTCAGGAGCACAATGAAACGGTACGGGTACTGTCGGCCGGATTGCTACAGATTTACGAGCCCAAGCTCAGGGAAGTTAAGGAAAACATGAAGGAACTGA TAAACAAGCAGAACGATCTACAAATTGCAATGACCAGCGAAAAGAATGCTTTCTCCAGTCGGCAGATACAGGAAGTCAACGAAATGGTGCTCAAGACGAAAGCCTACAAAGATAAGGTGGCGCGCATTAAAATGCAAATGCATCAAATTCATCAACGAACAAAGAATCTCAGGGCAAAAGCGTTGGAAATCCAGGAACTCAAGGTGAACCAATGTGCAACGAAGCTGCAACAGCTGCATTACGAAGAAT CGCTGGTTGCGAACAGTAAACGAACCCCACGGAAATCTTAATCCCGTTTCCCGCTCAAGGCCAGCAGAGAG CAGTGGAAGTGGTAATCAGCAATCCCAACCCGATTACTGTTTGAAAAACACAAATCGCATTTAATTAACGACATTGATCGGGGGACTTTTGTCCCCCATTCTCCCCACCCC TCGTTCGAAGACTAAAGACAGAGGCAGGAAGCAAGCAAGACTAATGATGATGCAC ] [-] EMBL CNS08FLH [ AAGTCAAGACATTCAGGAGCACAATGAAACGGTACGGGCACTGTCTGCCGGATTGCTACAGATTTACGAGCCAAAGCTCAGGGAAGTTAAGGAAAACCTGAAGGAACTGA TAAACAAACAGAACGATCTACAAATTGCAATGACCGGCGAAAAGAATGCTTTCTCCAGCCGGCAGATACAGGAAGTCAACGAAATGGTGCTCAAGACGAAAGCCTACAAAGATAAGGTGGCGCGCATCAAAATGCAAATGCATCAAATTCATCAACGAACAAAGAATCTCAGGGCAAAAGCGTTGGAAATCCAGGAACTCAAAGTGAACCAATGTGCAACGAAGCTGCAACAGCTGCATTACGAAGAAT CGCTGGTTGCGAACAGTAAACGAACCCCACGGAAATCTTAATCCCGTTTCCCGCTCAAGGCCAGCAGGGAG CAGTGGAAGTGGTAATCAGCAATCCCAACCCGATTACTGTTTGAAAAACACAAATCGCATTTAATTAACGACATTGATCGGGGGACTTTTGTCCCCCATTCTCCCCACCCC TCGTTCGAAGACTAAAGACAGAGGCAGGAAGCAAGCAAGACTAATGATGATGCACTGCCCTCTCAACGAAGCAATCTTTTAACACAACAAAGCAACCATAGAACAAGTGGGATGGAATGGAAACGTATAGTGAGTTTTTTGTTTGGAAGCGCTAAAAGGTCTCCGTTTTGCAACTTTGTTGCAAAAAAAAAACGAGTGTGTCAACCGTGCCTGAAGGAAGGGTCCATGATTGGTTGGAGTATGTCGTGTTTGTATGATTGCCACACCGATATTGCCAAAACTTAAAACAAAAAGAGGTAAAAACAAATCATAGACGAGTATAATATTTTAT CTTCCAAAAAAACGTGGGAAAGTTGGGATTTTACCGGTACACTTGTTAAGAGCGCAGG GAGCGCTAGTAC GTGAACAATCAAAATAAA ] [-] EMBL CNS09Q8Q [ AACACAAATCGCATTTAATTAACGACATTGATCGGGGGACTTTTGTCCCCCATTCTCCCCACCCC TCGTTCGAAGACTAAAGACAGAGGCAGGAAGCAAGCAAGACTAATGATGATGCACTGCCCTCTCAACGAAGCAATCTTTTAACACAACAAAGCAACCATAGAACAAGTGGGATGGGATGGAAACGTATAGTGAG AGCTGTTTGGAAGCGCTAAAAGGTCTCCGTTTTGCAACTTTGTTGCAAAAAAAAAACGAGTGTGTCAACCGTGCCTGAAGGAAGGGTCCATGATTGGTTGGAGTATGTCGTGTTTGTATGATTGCCACACCGATATTGCCAAAACTTAAAACAAAAAGAGGTAAAAACAAATCATAGACGAGTATAATATTTTAT CTTCCAAAAAAACGTGGGAAAGTTGGGATTTTACCGGTACACTTGTTAAGAGCGCAGGCGAGCGCTA ] [-] EMBL CNS09QJ4 [ GATGGAATGGAAACGTATAGTGAG AGCTGTTTGGAAGCGCTAAAAGGTCTCCGTTTTGCAACTTTGTTGCAAAAAAAAAACGAGTGTGTCAACCGTGCCTGAAGGAAGGGTCCATGATTGGTTGGAGTATGTCGTGTTTGTATGATTGCCACACCGATATTGCCAAAACTTAAAACAAAAAGAGGTAAAAACAAATCATAGACGAGTATAATATTTTATACTTCCAAAAAAACGTGGGAAAGTTGGGATTTTACCGGTACACTTGTTAAGAGCGCAGG GAGCGCTAGTACGGTGAACAATCAAAATAAAGTAAACA] consensusID : consensus_8063#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [GTAATGTATGTAAATAACAACAAAGCTCGTCCTGCGTGCCGATAATCTGCAACTTTTTCGTGTTTTCTGTACGACCAGCACAATTACGACATTCCAGGGCAATTATTGCAAAGCACCATGTCTGAGGAAACCTCCGACAGCGAAAGTCAAGACATTCAGGAGCACAATGAAACGGTACGGGCACTTTCTGCCGGATTGCTACAGATTTACGAGCCCAAGCTCAGGGAAGTTAAGGAAAACCTGAAGGAACTGATAAACAAACAGAACGATCTACAAATTGCTATGACCAGCGAAAAGAATGCTTTCTCTAGCCGGCAGATACAGGAAGTCAACGAAATGGTGCTCAAGACGAAAGCCTACAAAGATAAGGTGGCGCGCATTAAAATGCAAATGCATCAAATTCATCAACGAACAAAGAATCTCAGGGCAAAAGCGTTGGAAATCCAGGAACTCAAGGTGAACCAATGTGCAACGAAGCTGCAACAGCTGCATTACGAAGAATCGCTGGTTGCGAACAGTAAAC] [+] EMBL BM643013 [GTAATGTATGTAAATAACAACAAAGCTCGTCCTGCGTGCCGATAATCTGCAACTTTTTCGTGTTTTCTGTACGACCAGCACAATTACGACATTCCAGGGCAATTATTGCAAAGCACCATGTCTGAGGAAACCTCCGACAGCGAAAGTCAAGACATTCAGGAGCACAATGAAACGGTACGGGCACTTTCTGCCGGATTGCTACAGATTTACGAGCCCAAGCTCAGGGAAGTTAAGGAAAACCTGAAGGAACTGATAAACAAACAGAACGATCTACAAATTGCTATGACCAGCGAAAAGAATGCTTTCTCTAGCCGGCAGATACAGGAAGTCAACGAAATGGTGCTCAAGACGAAAGCCTACAAAGATAAGGTGGCGCGCATTAAAATGCAAATGCATCAAATTCATCAACGAACAAAGAATCTCAGGGCAAAAGCGTTGGAAATCCAGGAACTCAAGGTGAACCAATGTGCAACGAAGCTGCAACAGCTGCATTACGAAGAATCGCTGGTTGCGAACAGTAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8063#0 -CGACCCACGCGTCCGATAACAACAAAGCTCGTCCTGCGTGCCGATAATCTGCAACTTTT 59 consensus_8063#1 GTAATGTATGTA---AATAACAACAAAGCTCGTCCTGCGTGCCGATAATCTGCAACTTTT 57 * * * ******************************************** consensus_8063#0 TCGTGTTTTCTGTACAACCAGCAGCACAATTACGACATTCCAGGGCAATTATTGCAAAGC 119 consensus_8063#1 TCGTGTTTTCTGTACGACCAGCA---CAATTACGACATTCCAGGGCAATTATTGCAAAGC 114 *************** ******* ********************************** consensus_8063#0 ACCATGTCTGAGGAAACCTCCGACAGCGAAAGTCAAGACATTCAGGAGCACAATGAAACG 179 consensus_8063#1 ACCATGTCTGAGGAAACCTCCGACAGCGAAAGTCAAGACATTCAGGAGCACAATGAAACG 174 ************************************************************ consensus_8063#0 GTACGGGCACTGTCTGCCGGATTGCTACAGATTTACGAGCCCAAGCTCAGGGAAGTTAAG 239 consensus_8063#1 GTACGGGCACTTTCTGCCGGATTGCTACAGATTTACGAGCCCAAGCTCAGGGAAGTTAAG 234 *********** ************************************************ consensus_8063#0 GAAAACCTGAAGGAACTGATAAACAAACAGAACGATCTACAAATTGCAATGACCGGCGAA 299 consensus_8063#1 GAAAACCTGAAGGAACTGATAAACAAACAGAACGATCTACAAATTGCTATGACCAGCGAA 294 *********************************************** ****** ***** consensus_8063#0 AAGAATGCTTTCTCCAGCCGGCAGATACAGGAAGTCAACGAAATGGTGCTCAAGACGAAA 359 consensus_8063#1 AAGAATGCTTTCTCTAGCCGGCAGATACAGGAAGTCAACGAAATGGTGCTCAAGACGAAA 354 ************** ********************************************* consensus_8063#0 GCCTACAAAGATAAGGTGGCGCGCATCAAAATGCAAATGCATCAAATTCATCAACGAACA 419 consensus_8063#1 GCCTACAAAGATAAGGTGGCGCGCATTAAAATGCAAATGCATCAAATTCATCAACGAACA 414 ************************** ********************************* consensus_8063#0 AAGAATCTCAGGGCAAAAGCGTTGGAAATCCAGGAACTCAAAGTGAACCAATGTGCAACG 479 consensus_8063#1 AAGAATCTCAGGGCAAAAGCGTTGGAAATCCAGGAACTCAAGGTGAACCAATGTGCAACG 474 ***************************************** ****************** consensus_8063#0 AAGCTGCAACAGCTGCATTACGAAGAATCGCTGGTTGCGAACAGTAAACGAACCCCACGG 539 consensus_8063#1 AAGCTGCAACAGCTGCATTACGAAGAATCGCTGGTTGCGAACAGTAAAC----------- 523 ************************************************* consensus_8063#0 AAATCTTAATCCCGTTTCCCGCTCAAGGCCAGCAGGGAGCAGTGGAAGTGGTAATCAGCA 599 consensus_8063#1 ------------------------------------------------------------ consensus_8063#0 ATCCCAACCCGATTACTGTTTGAAAAACACAAATCGCATTTAATTAACGACATTGATCGG 659 consensus_8063#1 ------------------------------------------------------------ consensus_8063#0 GGGACTTTTGTCCCCCATTCTCCCCACCCCTCGTTCGAAGACTAAAGACAGAGGCAGGAA 719 consensus_8063#1 ------------------------------------------------------------ consensus_8063#0 GCAAGCAAGACTAATGATGATGCACTGCCCTCTCAACGAAGCAATCTTTTAACACAACAA 779 consensus_8063#1 ------------------------------------------------------------ consensus_8063#0 AGCAACCATAGAACAAGTGGGATGGAATGGAAACGTATAGTGAGAGCTGTTTGGAAGCGC 839 consensus_8063#1 ------------------------------------------------------------ consensus_8063#0 TAAAAGGTCTCCGTTTTGCAACTTTGTTGCAAAAAAAAAACGAGTGTGTCAACCGTGCCT 899 consensus_8063#1 ------------------------------------------------------------ consensus_8063#0 GAAGGAAGGGTCCATGATTGGTTGGAGTATGTCGTGTTTGTATGATTGCCACACCGATAT 959 consensus_8063#1 ------------------------------------------------------------ consensus_8063#0 TGCCAAAACTTAAAACAAAAAGAGGTAAAAACAAATCATAGACGAGTATAATATTTTATC 1019 consensus_8063#1 ------------------------------------------------------------ consensus_8063#0 TTCCAAAAAAACGTGGGAAAGTTGGGATTTTACCGGTACACTTGTTAAGAGCGCAGGGAG 1079 consensus_8063#1 ------------------------------------------------------------ consensus_8063#0 CGCTAGTACGTGAACAATCAAAATAAAGTAAACA 1113 consensus_8063#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||