These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8077#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1501 fasta sequence [CCGCTGCAAAACAATATCAAAACATTACGTGCCCAAAATCACACACC-AATAAAAAAAATATCCAACAAATCCATCGTGCAGTGAACGCCGTGTGAAACGCATATTGCAAATGCTGC-CCCAGGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGAGAGAAAGAGAGAGTGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGA-TGTGCACCAATGGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGACGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTGCTGCTCGCACCTGGCC-AAAACCTTCGTCGACAATGGGCTGCGTCGGCTGCAGGAGATCAACCTGTCCGGGAACAACTCG-CCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTGCCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTGCCCGCTGCTCAAGCACAACCGCCGGCTGACGAAGATCAATCTGAGCGAGTGTCTCAACATCACGCCCCGCTCGATGCAGCCGATCATCATCGGGTGCAAGCAGCTGACCACGCTCAAGCTGTCCCACTGCCACTGGCTCACGATCGGGGCGATGGAGGCGCTGACGCTGCACCACACCAAACTGCAGGAGCTGGACGTGTCGCACTGTGCCGCGCTGAACGAGCGCTGCATCTCGGTGTTTCTGCTCAGCTGCCGCATGCTGAAGACGCTCTCCCTATAAAAAGTGCACGCGGTCACGGACAATTTGCTGTTTGCGATAGCGAAGCATTCAAAATTCATCAAAAACCTTAACCTAGTCGGTTGTTACCTTATTACGGATCGGGGTGTTTTAGCGCTTGCCTTTTGCTGTAAGGAGCTGGAATCGCTTATGGTGCGCGAGTGTCCCCATGTGACGGAGCGAAGCCTGGCGGTGCTGCGCGGCCGTGTATTCATCGACC-GACCGCGCGTCTACCAGCAGGACATGAACATGGTGCCGAACATGGGCTTCCCTCGGATGTTTCTGCAGGTCTGATTTGGTGGCCCAGCCACCGTTTCCCCCCGCTTCCCGCGCTTCTCCCCACTTAGGTCACCCGCCCTCCCCGCGGGATTCGTTACGCAAGCCATAACTGGGATAATATTTTACGGATAATACATGGAAAAAGGGTGTGATAGTTATCGTAATAGTTAACAAACGTGACATACAATGGAGCACGGAGCGCTGTAAATAATAGTGCGTAGCGCGCACACACAAACACACACAGACACATATATATACAGGAGACATACCTATAGGCTATACTTACCACGCTATATATGTACCATTTATCTTGTTGTATACATACAGGGTCGTAAATTTAAATTAAAAGAAAAACTAAATACACATAATTTATTTGATTTCGTCTTATCGGCAAAATCGACGACT] [+] EMBL BM586774 [CCGCTGCAAAACAATATCAAAACATTACGTGCCCAAAATCACACACC AATAAAAAAAATATCCAACAAATCCATCGTGCAGTGAACGCCGTGTGAAACGCATATTGCAAATGCTGC CCCAGGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGAGAGAAAGAGAGAGTGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGA TGTGCACCAATGGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGACGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTGCTGCTCGCACCTGGCC AAAACCTTCGTCGACAATGGGCTGCGTCGGCTGCAGGAGATCAACCTGTCCGGGAACAACTCG CCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTGCCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTGCCCGCTGCTCAAGCACAACCGCCGGCTGACGAAGATCAATCTGAGCGAGTGTCTCAACATCACGCCCCGCTCGATGCAGCCGATCATCATCGGGTGCAAGCAGCTGACCACGCTC ] [+] EMBL BM656565 [ ccgAAACAATATCAAAACATTACGTGCCCAAAATCACACACC AATAAAAAAAATATCCAACAAATCCATCGTGCAGTGAACGCCGTGTGAAACGCATATTGCAAATGCTGC CCCAGGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGAGAGAGAGAGAGAGCGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGA TGTGCACCAATGGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGACGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTGCTGCTCGCACCTGGCC AAAACCTTCGTCGACAATGGACTGCGTCGGCTGCAGGAGATCAACCTGTCCGGGAACAACTCG CCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTGCCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTGCCCGCTGCTCAAGCACAACCGCCGGCTGACGAAGATCAATCTGAGCGAGTGTCTCAACATCACGCCCCGCTCGATGCAGCCGATCATCATCGGGTGCAAGCAGCTGA ] [+] EMBL BX627870 [ AATCACACACCAAAAAAAAAAAATATCCAACAAATCCATCGTGCAGTGAACGCCGTGTGAAACGCATATTGCAAATGCTGC CCCAGGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGACAG AGAGAGAGCGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGA TGTGCACCAATGGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGACGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTGCTGCTCGCACCTGGCC AAAACCTTCGTCGACAATGGGCTGCGTCGGCTGCAGGAGATCAACCTGTCCGGGAACAACTCG CCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTGCCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTGCCCGCTGCTCAAGCACAACCGCCGGCTGACGAAGATCAATCTGAGCGAGTGTCTCAACATCACGCCCCGCTCGATGCAGCCGATCATCATCGGGTGCAAGCAGCTGACCACGCTCAAGCTGTCCCACTGCCACTGGCTCACGATCGGGGCGATGGANGCGCTGACGCTGCACCACACCAAACTGCANGAGCTGGACGTGTCNCACTGTGCCGCGCTGAACGAGCGCTGCATCTCGGNGTTTCTGCTCAGCTGCCGCATGCTGAAAACct ] [+] EMBL CNS0991I [ ccatAAAATATCCAACAAATCCATCGTGCAGTGAACGCCGTGTGAAA GCATATTGCAAATGCTGC CCCAGGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGAGAGAAAGAGAGAGTGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGAGTGTGCACCAATGGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGACGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTGCTGCTCGCACCTGGCC AAAACCTTCGTCGACAATGGGCTGCGTCGGCTGCAGGAGATCAACCTGTCCGGGAACAACTCG CCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTGCCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTGCCCGCTGCTCAAGCACAACCGCCGGCTGACGAAGATCAATCTGAGCGAGTGTCTCAACATCACGCCCCGCTCGATGCAGCCGATCATCATCGGGTGCAAGCAGCTGACCACGCTCAAGCTGTCCCACTGCCACTGGCTCACGATCGGGGCGATGGAGGCGCTGACGCTGCACCACACCAAACTGCAGGAGCTGGACGTGTCGCACTGTGCCGCGCTGAACGAGCGCTGCATCTCGGTGTTTCTGCTCAGCTGCCGCATGCTGAAGACGCTCTCCCTATAAAAAGTGCA ] [+] EMBL BX619748 [ ATTCATCGTGCAGTGAACGCCGTGTGAAACGCATATTGCAAATGCTGCGCCCAGGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGAGAGAAAGAGAGAGTGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGA TGTGCACCAATGGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGACGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTGCTGCTCGCACCTGGCC AAAACCTTCGTCGACAATGGGCTGCGTCGGCTGCAGGAGATCAACCTGTCCGGGAACAACTCG CCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTGCCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTGCCCGCTGCTCAAGCACAACCGCCGGCTGACGAAGATCAATCTGAGCGAGTGTCTCAACATCACGCCCCGCTCGATGCAGCCGATCATCATCGGGTGCAAGCAGCTGACCACGCTCAAGCTG ] [+] EMBL BX625448 [ GCCGTGTGAAACGCATATTGCAAATGCTGC CCCAGGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGACAG AGAGAGAGCGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGA TGTGCACCAATGGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGACGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTGCTGCTCGCACCTGGCCAAAAACCTTCGTCGACAATGGGCTGCGTCGGCTGCAGGAGATCAACCTGTCCGGGAACAACTCGCCCCCACCTCGACC ] [+] EMBL BX612046 [ TGCAGCCGATCATCATCGGGTGCAAGCAGCTGACCACGCTCAAGCTGTCCCACTGCCACTGGCTCACGATCGGGGCGATGGAGGCGCTGACGCTGCACCACACCAAACTGCAGGAGCTGGACGTGTCGCACTGTGCCGCGCTGAACGAGCGCTGCATCTCGGTGTTTCTGCTCAGCTGCCGCATGCTGAAGACGCTCTCCCTGTCCAACGTGCCCGCGGTCACGGACAATTTGCTGTTTGCGATAGCGAAGCATTCAAAATTCATCAAAAACCTTAACCTAGTCGGTTGTTACCTTATTACGGATCGGGGTGTTTTAGCGCTTGCCTTTTGCTGTAAGGAGCTGGAATCGCTTATGGTGCGCGAGTGTCCCCATGTGACGGAGCGAAGCCTGGCGGTGCTGCGCGGCCGTGTATTCATCGACC GACCGCGCGTCTACCAGCAGGACATGAACATGGTGCCGAACATGGGCTTCCCTCGGATGTTTCTGCAGGTCTGATTTGGTGGCCCAGCCACCGTTTCCCCCCGCTTCCCGCGCTTCTCCCCACTTAGGTCACCCGCCCTCCCCGCGGGATTCGTTACGCAAGCCATAACTGGGATAATATTTTACGGATAATACATGGAAAAAGGGTGTGATAGTTATCGTAATAGTTAACAAACGTGACATACAATGG ] [-] EMBL CNS0991J [ TGTTTTAGAGCTTGCCTTTTGCTGTAAGGAGCTGGAATCGCTTATGGTGCGCGAGTGTCCCCATGTGACGGAGCGAAGCCTGGCGGTG TGCGCGGCCGTGTATTCATCGACCGGACCGCGCGTCTACCAGCAGGACATGAACATGGTGCCGAACATGGGCTTCCCCCGGATGTTTCTGCAGGTCTGATTT GTGGCCCAGCCACCGTTTCCCCCCGCTTCCCGCGCTTCTCCCCACTTAGGTCACCCGCCCTCCCCGCGGGATTCGTTACGCAAGCCATAACTGGGATAATATTTTACGGATAATACATGGAAAAAGGGTGTGATAGTTATCGTAATAGTTAACAAACGTGACATACAATGGAGCACGGAGCGCTGTAAATAATAGTGCGTAGCGCGCACACACAAACACACACAGACACATATATATACAGGAGACATACCTATAGGCTATACTTACCACGCTATATATGTACCATTTATCTTGTTGTATACATACAGGGTCGTAAATTTAAATTAAAAGAAAAACTAAATACACATAATTTATTTGATTTCGTCTTATCGGCAAAATCGACGACT] consensusID : consensus_8077#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [AATCGCCCGAGGNNAAATATCAACAAATCCATCGTGCAGTGAACGCCGTGTGAAACGCATTTTGCAAATGCTGCCCCAGGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGAGAGAGAGAGAGAGCGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGATGTGCACCAATGGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGACGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTGCTGCTCGCACCTGGCCAAAACCTTCGTCGACAATGGACTGCGTCGGCTGCAGGAGATCAACCTGTCCGGGAACAACTCGCCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTGCCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTGCCCGCTGCTCAAGCACAACCGCCGGCTG] [+] EMBL AL931092 [AATCGCCCGAGGNNAAATATCAACAAATCCATCGTGCAGTGAACGCCGTGTGAAACGCATTTTGCAAATGCTGCCCCAGGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGAGAGAGAGAGAGAGCGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGATGTGCACCAATGGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGACGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTGCTGCTCGCACCTGGCCAAAACCTTCGTCGACAATGGACTGCGTCGGCTGCAGGAGATCAACCTGTCCGGGAACAACTCGCCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTGCCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTGCCCGCTGCTCAAGCACAACCGCCGGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8077#0 CCGCTGCAAAACAATATCAAAACATTACGTGCCCAAAATCACACACCAATAAAAAAAATA 60 consensus_8077#1 ------------------------------------AATCGCCCG-----AGGNNAAATA 19 **** * * * ***** consensus_8077#0 TCCAACAAATCCATCGTGCAGTGAACGCCGTGTGAAACGCATATTGCAAATGCTGCCCCA 120 consensus_8077#1 TC-AACAAATCCATCGTGCAGTGAACGCCGTGTGAAACGCATTTTGCAAATGCTGCCCCA 78 ** *************************************** ***************** consensus_8077#0 GGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGAGAGA 180 consensus_8077#1 GGCGGAAGTGGAAATACGCCCCGAAAGCAGCAACCATCCACCAATTTCCGTCTAGAGAGA 138 ************************************************************ consensus_8077#0 AAGAGAGAGTGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGATGTGCACCAAT 240 consensus_8077#1 GAGAGAGAGCGAGGGGCCCGTGTAAGATCCAGTCCGTCGCGACGACGGATGTGCACCAAT 198 ******** ************************************************** consensus_8077#0 GGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGA 300 consensus_8077#1 GGCGGACAGTGACAACAGCGATAACGATGGGCTGAGCCTGTTCGATATCGTCTGGGAGGA 258 ************************************************************ consensus_8077#0 CGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTG 360 consensus_8077#1 CGTGCTGTACGTGAAGCTGTTCCCGCTGCTCTCGCTGAAGGACCTGTTTAACCTGCGGTG 318 ************************************************************ consensus_8077#0 CTGCTCGCACCTGGCCAAAACCTTCGTCGACAATGGGCTGCGTCGGCTGCAGGAGATCAA 420 consensus_8077#1 CTGCTCGCACCTGGCCAAAACCTTCGTCGACAATGGACTGCGTCGGCTGCAGGAGATCAA 378 ************************************ *********************** consensus_8077#0 CCTGTCCGGGAACAACTCGCCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTG 480 consensus_8077#1 CCTGTCCGGGAACAACTCGCCCCACCTCGACCTGGCCCTCACCGTGCTGGCCGACAACTG 438 ************************************************************ consensus_8077#0 CCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTG 540 consensus_8077#1 CCGGAACGTGCGGGTCGTCAATCTGGCCCGCTGCAACTGGCTGCAGGACAGCGTGCTCTG 498 ************************************************************ consensus_8077#0 CCCGCTGCTCAAGCACAACCGCCGGCTGACGAAGATCAATCTGAGCGAGTGTCTCAACAT 600 consensus_8077#1 CCCGCTGCTCAAGCACAACCGCCGGCTG-------------------------------- 526 **************************** consensus_8077#0 CACGCCCCGCTCGATGCAGCCGATCATCATCGGGTGCAAGCAGCTGACCACGCTCAAGCT 660 consensus_8077#1 ------------------------------------------------------------ consensus_8077#0 GTCCCACTGCCACTGGCTCACGATCGGGGCGATGGAGGCGCTGACGCTGCACCACACCAA 720 consensus_8077#1 ------------------------------------------------------------ consensus_8077#0 ACTGCAGGAGCTGGACGTGTCGCACTGTGCCGCGCTGAACGAGCGCTGCATCTCGGTGTT 780 consensus_8077#1 ------------------------------------------------------------ consensus_8077#0 TCTGCTCAGCTGCCGCATGCTGAAGACGCTCTCCCTATAAAAAGTGCACGCGGTCACGGA 840 consensus_8077#1 ------------------------------------------------------------ consensus_8077#0 CAATTTGCTGTTTGCGATAGCGAAGCATTCAAAATTCATCAAAAACCTTAACCTAGTCGG 900 consensus_8077#1 ------------------------------------------------------------ consensus_8077#0 TTGTTACCTTATTACGGATCGGGGTGTTTTAGCGCTTGCCTTTTGCTGTAAGGAGCTGGA 960 consensus_8077#1 ------------------------------------------------------------ consensus_8077#0 ATCGCTTATGGTGCGCGAGTGTCCCCATGTGACGGAGCGAAGCCTGGCGGTGCTGCGCGG 1020 consensus_8077#1 ------------------------------------------------------------ consensus_8077#0 CCGTGTATTCATCGACCGACCGCGCGTCTACCAGCAGGACATGAACATGGTGCCGAACAT 1080 consensus_8077#1 ------------------------------------------------------------ consensus_8077#0 GGGCTTCCCTCGGATGTTTCTGCAGGTCTGATTTGGTGGCCCAGCCACCGTTTCCCCCCG 1140 consensus_8077#1 ------------------------------------------------------------ consensus_8077#0 CTTCCCGCGCTTCTCCCCACTTAGGTCACCCGCCCTCCCCGCGGGATTCGTTACGCAAGC 1200 consensus_8077#1 ------------------------------------------------------------ consensus_8077#0 CATAACTGGGATAATATTTTACGGATAATACATGGAAAAAGGGTGTGATAGTTATCGTAA 1260 consensus_8077#1 ------------------------------------------------------------ consensus_8077#0 TAGTTAACAAACGTGACATACAATGGAGCACGGAGCGCTGTAAATAATAGTGCGTAGCGC 1320 consensus_8077#1 ------------------------------------------------------------ consensus_8077#0 GCACACACAAACACACACAGACACATATATATACAGGAGACATACCTATAGGCTATACTT 1380 consensus_8077#1 ------------------------------------------------------------ consensus_8077#0 ACCACGCTATATATGTACCATTTATCTTGTTGTATACATACAGGGTCGTAAATTTAAATT 1440 consensus_8077#1 ------------------------------------------------------------ consensus_8077#0 AAAAGAAAAACTAAATACACATAATTTATTTGATTTCGTCTTATCGGCAAAATCGACGAC 1500 consensus_8077#1 ------------------------------------------------------------ consensus_8077#0 T 1501 consensus_8077#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||