These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_81#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [GGCAGAATCGCGCACGAGGGTTTTTGCGTAGTAAAAGTGTACAAAAGCAAAGGTGTGAGCGTAGCAATCGCTTCACTTTGATGTGAGCAAGTGGATTGAAAGTTTAATGAAAAAATGTGTAAAATGGTGAAAAGTGTACGATTAGGTTGAGCTGTAGCATAAACACTGTAGCATAAAGTGCGAAGGGCGGACGAAGCGGCGGGTGGTAAAGATACAGTTTAGTGTTAGGAGTGTGCTTACCCCGAGCAAAATCATCCCAGTGCTTGCGCGTGTTTCGTGACATGACGTGGTGGGTGTGAAAAATTAGAAAACAAAGGACATTTCCCTTTGTCCCATATTTCCCTTATCCCACGGCGCGATTTAAGGTGTTTCGGTGCGAAAATCCTCTCTTTGTGTCCTCTAATATAATTGATTCGGTCTCGGTGGTTGCAAAGTGTGTGTGCGTGTAGAAACGATTCGCGCGAGTAAAGCAAAGGACGCCCCGAAAACGGAAAACAAAGTGTTGGCGAATGGAATGAACCGCTTCGGAACAAGTGTNTTGCTGGTGCTGTGTGAGTGAGGTGTGTGCGTGGTAANGATCAGTGTNTCGAANAGGAAGGATATCAAAGGTGTCTAAAACNAGGCGNAGTTTCTCACC] [+] EMBL BX467417 [GGCAGAATCGCGCACGAGGGTTTTTGCGTAGTAAAAGTGTACAAAAGCAAAGGTGTGAGCGTAGCAATCGCTTCACTTTGATGTGAGCAAGTGGATTGAAAGTTTAATGAAAAAATGTGTAAAATGGTGAAAAGTGTACGATTAGGTTGAGCTGTAGCATAAACACTGTAGCATAAAGTGCGAAGGGCGGACGAAGCGGCGGGTGGTAAAGATACAGTTTAGTGTTAGGAGTGTGCTTACCCCGAGCAAAATCATCCCAGTGCTTGCGCGTGTTTCGTGACATGACGTGGTGGGTGTGAAAAATTAGAAAACAAAGGACATTTCCCTTTGTCCCATATTTCCCTTATCCCACGGCGCGATTTAAGGTGTTTCGGTGCGAAAATCCTCTCTTTGTGTCCTCTAATATAATTGATTCGGTCTCGGTGGTTGCAAAGTGTGTGTGCGTGTAGAAACGATTCGCGCGAGTAAAGCAAAGGACGCCCCGAAAACGGAAAACAAAGTGTTGGCGAATGGAATGAACCGCTTCGGAACAAGTGTNTTGCTGGTGCTGTGTGAGTGAGGTGTGTGCGTGGTAANGATCAGTGTNTCGAANAGGAAGGATATCAAAGGTGTCTAAAACNAGGCGNAGTTTCTCACC] consensusID : consensus_81#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [CACGCGTCCGCATCCGCGGTGTGTTGTTGGCGTTAGATGTTTGTGTCCCATACTTCTTCATTCGATCGGTTTATTTCGACTGTTTTTGCGTAGTAAAAGTATACAAAAGCAAAGGTGTGAGCGTACTAATCGCTTCACTTTGATGTGAGTAAGTGGATTGAAAGTTTAATGAAAAAATGTGTAAAATGGTGAAAAGTGTACGATTAGGTCGAGCTGTAGCATAAACACTGTAGCATAAAGTGCGAAGGGCGGACGAAGCGGCGAGTGGTAAAGATACAGTTTGGTGTTAGGAGTGTGCTTACCCCGAGCAAAATCATCCCAGTGCTTGCGCGTGTTCCGTGACATGACGTGGTGGGTGTGAAAAATTAGAAAACAAAGGACATTTCCCTTTGTCCCATATTTCCCTTATCCCACGGCGCGATTTAAGGTGTTTCGGTG] [+] EMBL BM628996 [CACGCGTCCGCATCCGCGGTGTGTTGTTGGCGTTAGATGTTTGTGTCCCATACTTCTTCATTCGATCGGTTTATTTCGACTGTTTTTGCGTAGTAAAAGTATACAAAAGCAAAGGTGTGAGCGTACTAATCGCTTCACTTTGATGTGAGTAAGTGGATTGAAAGTTTAATGAAAAAATGTGTAAAATGGTGAAAAGTGTACGATTAGGTCGAGCTGTAGCATAAACACTGTAGCATAAAGTGCGAAGGGCGGACGAAGCGGCGAGTGGTAAAGATACAGTTTGGTGTTAGGAGTGTGCTTACCCCGAGCAAAATCATCCCAGTGCTTGCGCGTGTTCCGTGACATGACGTGGTGGGTGTGAAAAATTAGAAAACAAAGGACATTTCCCTTTGTCCCATATTTCCCTTATCCCACGGCGCGATTTAAGGTGTTTCGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_81#0 ------------------------------------------------------------ consensus_81#1 CACGCGTCCGCATCCGCGGTGTGTTGTTGGCGTTAGATGTTTGTGTCCCATACTTCTTCA 60 consensus_81#0 ---GGCAGAATCGCGCACGAGGGTTTTTGCGTAGTAAAAGTGTACAAAAGCAAAGGTGTG 57 consensus_81#1 TTCGATCGGTTTAT-TTCGACTGTTTTTGCGTAGTAAAAGTATACAAAAGCAAAGGTGTG 119 * * * *** ******************* ****************** consensus_81#0 AGCGTAGCAATCGCTTCACTTTGATGTGAGCAAGTGGATTGAAAGTTTAATGAAAAAATG 117 consensus_81#1 AGCGTACTAATCGCTTCACTTTGATGTGAGTAAGTGGATTGAAAGTTTAATGAAAAAATG 179 ****** ********************** ***************************** consensus_81#0 TGTAAAATGGTGAAAAGTGTACGATTAGGTTGAGCTGTAGCATAAACACTGTAGCATAAA 177 consensus_81#1 TGTAAAATGGTGAAAAGTGTACGATTAGGTCGAGCTGTAGCATAAACACTGTAGCATAAA 239 ****************************** ***************************** consensus_81#0 GTGCGAAGGGCGGACGAAGCGGCGGGTGGTAAAGATACAGTTTAGTGTTAGGAGTGTGCT 237 consensus_81#1 GTGCGAAGGGCGGACGAAGCGGCGAGTGGTAAAGATACAGTTTGGTGTTAGGAGTGTGCT 299 ************************ ****************** **************** consensus_81#0 TACCCCGAGCAAAATCATCCCAGTGCTTGCGCGTGTTTCGTGACATGACGTGGTGGGTGT 297 consensus_81#1 TACCCCGAGCAAAATCATCCCAGTGCTTGCGCGTGTTCCGTGACATGACGTGGTGGGTGT 359 ************************************* ********************** consensus_81#0 GAAAAATTAGAAAACAAAGGACATTTCCCTTTGTCCCATATTTCCCTTATCCCACGGCGC 357 consensus_81#1 GAAAAATTAGAAAACAAAGGACATTTCCCTTTGTCCCATATTTCCCTTATCCCACGGCGC 419 ************************************************************ consensus_81#0 GATTTAAGGTGTTTCGGTGCGAAAATCCTCTCTTTGTGTCCTCTAATATAATTGATTCGG 417 consensus_81#1 GATTTAAGGTGTTTCGGTG----------------------------------------- 438 ******************* consensus_81#0 TCTCGGTGGTTGCAAAGTGTGTGTGCGTGTAGAAACGATTCGCGCGAGTAAAGCAAAGGA 477 consensus_81#1 ------------------------------------------------------------ consensus_81#0 CGCCCCGAAAACGGAAAACAAAGTGTTGGCGAATGGAATGAACCGCTTCGGAACAAGTGT 537 consensus_81#1 ------------------------------------------------------------ consensus_81#0 NTTGCTGGTGCTGTGTGAGTGAGGTGTGTGCGTGGTAANGATCAGTGTNTCGAANAGGAA 597 consensus_81#1 ------------------------------------------------------------ consensus_81#0 GGATATCAAAGGTGTCTAAAACNAGGCGNAGTTTCTCACC 637 consensus_81#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||