These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8122#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 982 fasta sequence [ACAAGAACGTGCCGGACATGTTCGACATCTTTAGGCGCATTTTCAACGAGCTCGAGCTGAACGACGTTA-AGCGGTTTGAGATGCTGCTAGAAAACTACCTGTCCGAGATGTCGGTCGGTATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAGGCGGGCCGGCTCAGGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCATGAAGGATCTGGCCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCGAGGAGTCGGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGCAGCACTACGGCAAGTTCATCGACAGCATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGGAACGTTTCGGAGCCGCTTGCGACGACGCCGGCGGGTGCCTGCCGCCACACGGTCATGAACATTCCCGTCAACTACTGCGCCAAGTCGATCGTGGCCGTCCCGTACACCCATCGCCACTATGCGCCGCTGAAGGTGCTCGCGAAGTACCTGTCGGCCAAGTATCTGCTGCCGGTGGTGCGCGAACAGAACGGTGCGTACGGTGCGGGTGCGAAAATCACGTCGGACGGGCTGTTCAACTTCTACAGCTACCGCGATCCGAACTCGCGCACCACGCTGGACGTGTTCGATGAGGCGTACAGGTGGAACGTGCGCACCGTGCCGCAGATGGACGAGCAGACGCTGTTCGAGGCGAAGCTGGGCGTGCTGCAGCAGCTGGACGTGCCGATTGCGCCGCTCGAGCGGGGCATGGATCTGTTCCGGCAGGGCATTTCCGACGAGCTGTTCGGGCAGCACCGTGCGGCCGTGCTGGACGTCGGCAAGGACCTGCTGCTGGAGGTCAACGAGCACTATCTGAAGCCGGGCGCGGTGAAGGTGGTTGGGAAGTCGGTGCTCGGACCGGAAAACAA] [+] EMBL BX610231 [ACAAGAACGTGCCGGACATGTTCGACATCTTTAGGCGCATTTTCAACGAGCTCGAGCTGAACGACGTTA AGCGGTTTGAGATGCTGCTAGAAAACTACCTGTCCGAGATGTCGGTCGGTATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAGGCGGGCCGGCTCAGGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCATGAAGGATCTGGCCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCGAGGAGTCGGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGCAGCACTACGGCAAGTTCATCGACAGCATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGGAACGTTTCGGAGCCGCTTGCGACGACGCCGGCGGGTGCCTGCCGCCACACGGTCATGAACATTCCCGTCAACTACTGCGCCAAGTCGATCGTGGCCGTCCCGTACACCCATCGCCACTATTCGCCGCTGAAGGTGCTCGCGAAGTACCTGTCGGCCAAGTATCTGCTGCCGGTGGTGCGCGAACAGAACGGTGCGTACGGTGCGGGTGCGAAAATCACGTCGGACGGGCTGTTCAACTTCTACAGCTACCGCGATCCGAACTCGCGCACCACGCT ] [+] EMBL BX619322 [ TTCAACGAGCTCGAGCTGAACGACGTTAGAGCGGTTTGAGATGCTGCTAGAAAACTACCTGTCCGAGATGTCGGTCGGTATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAGGCGGGCCGGCTCAGGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCATGAAGGATCTGGCCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCGAGGAGTCGGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGCAGCACTACGGCAAGTTCATCGACAGCATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGGAACGTTTCGGAGCCGCTTGCGACGACGCCGGCGGGTGCCTGCCGCCACACGGTCATGAACATTCCCGTCAACTACTGCGCCAng ] [+] EMBL BX620547 [ GCTGAACGACGTTA AGCGGTTTGAGATGCTGCTAGAAAACTACCTGTCCGAGATGTCGGTCGGTATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAGGCGGGCCGGCTCAGGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCATGAAGGATCTGGCCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCGAGGAGTCGGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGCAGCACTACGGCAAGTTCATCGACAGCATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGGAACGTTTCGGAGCCGCTTGCGACGACGCCGGCGGGTGCCTGCCGCCACACGGTCATGAACATTCCCGTCAACTACTGCGCCAAGTCGATCGTGGCCGTCCCGTACACCCATCGCCACTATGCGCCGCTGAAGGTGCTCGCGAAGTACCTGTCGGCCAAGTATCTGCTGCCGGTGGTGCGCGAACAGAACGGTGCGTACGGTGCGGGTGCGAAAATCACGTCGGACGGGCTGTTCAACTTCTACAGCTACCGCGATCCGAACTCGCGCACCACGCT ] [+] EMBL BX628915 [ TGAACGACGTTA AGCGGTTTGAGATGCTGCTAGAAAACTACCTGTCCGAGATGTCGGTCGGTATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAGGCGGGCCGGCTCAGGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCATGAAGGATCTGGCCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCGAGGAGTCGGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGCAGCACTACGGCAAGTTCATCGACAGCATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGGAACGTTTCGGAGCCGCTTGCGACGACGCCGGCGGGTGCCTGCCGCCACACGGTCATGAACATTCCCGTCAACTACTGCGCCAAGTCGATCGTGGCCGTCCCGTACACCCATCGCCACTATGCGCCGCTGAAGGTGCTCGCGAAGTACCTGTCGGCCAAGTATCTGCTGCCGGTGGTGCGCGAACAGAACGGTGCGTACGGTGCGGGTGCGAAAATCACGTCGGACGGGCTGTTCAACTTCTACAGCTACCGCGATCCGAACTCGCGCACCACGCTG ] [+] EMBL BX628904 [ GTTA AGCGGNTTGAGATGCTGCTATAAAACTACCTGTCCNAGATGTCGGTCGGTATCTCCCAGTCCGGGCACNTGTACGCGATGCANAACGCTAACGGGTTGGTAACNGAGGCNGGCCGGCTCAGGGAGCGGCTGATGGGCATCTAGCATCTCGCCTTNATGAAGGATCTGGCCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCNAAGCTGTTCGAGGAGTCGGGAATGCGCTGCNCACTTAACTTTACNCTCACCTCGGANCAGCAAACGGTGCAGCACTACGGCAAGTTCATCGACAGCATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGGA ] [+] EMBL BX620047 [ ACTACCTGTCCGAGATGTCGGTCGGTATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAGGCGGGCCGGCTCAGGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCATGAAGGATCTGGCCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCGAGGAGTCGGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGCAGCACTACGGCAAGTTCATCGACAGCATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGGAACGTTTCGGAGCCGCTTGCGACGACGCCGGCGGGTGCCTGCCGCCACACGGTCATGAACATTCCCGTCAACTACTGCGCCAAGTCGATCGTGGCCGTCCCGTACACCCATCGCCACTATGCGCCGCTGAAGGTGCTCGCGAAGTACCTGTCGGCCAAGTATCTGCTGCCGGTGGTGCGCGAACAGAACGGTGCGTACGGTGCGGGTGCGAAAATCACGTCGGACGGGCTGTTCAACTTCTACAGCTACCGCGATCCGAACTCGCGCACCACGCT ] [+] EMBL BX607652 [ TCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCGAGGAG CGGGAATGCGCTGCGCACTGAACTTTACACCCACCTCGGAGCAGCAAACGGTGCAGCACTACGGCAAGTTCATCGACAGCATTCCCGTGCGCAGTACGCAGACGAGGGTTTGGAACGTTTCGGAGCCGCTGGCGACGACGCCGGCGGGTGCCTGCCGCCACACGGTTATGAACATTCCCGTCAACTACTGCGCCAAGTCGATCGTGGCCGTCCCGTACACCCATCGCCACTACGCGCCGCTGAAGGTGCTCGCGAAGTACCTGTCGGCCAAGTATCTGCTGCCTGTGGTGCGCGAACAGAACGGCGCGTACGGTGCGGGTGCGAAGATCACGTCGGACGGGCTGTTCAACTTCTACAGCTACCGCGATCCGAACTCGCGCACCACGCTGGACGTGTTCGATGAGGCGTACAGGTGGAACGTGCGCACCGTGCCGCAGATGGACGAGCAGACGCTGTTCGAGGCGAAGCTGGGCGTGCTGCAGCAGCTGGACGTGCCGATTGCGCCGCTCGAGCGGGGCATGGATCTGTTCCGGCAGGGCATTTCCGACGAGCTGTTCGGGCAGCACCGTGCGGCCGTGCTGGACGTCGGCAAGGACCTGCTGCTGGAGGTCAACGAGCACTATCTGAAGCCGGGCGCGGTGAAGGTGGTTGGGAAGTCGGTGCTCGGACCGGAAAACAA] consensusID : consensus_8122#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence [TCGCACGAGGTGTACGGACATGTTCGACATCTTTAGCGCATTTTCAACGAGCTCGAGCTGAACGACGTTAAGCGGTTTGAGATGCTGCTAGAAAACTACCTGTCCGAGATGTCGGTCGGTATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAAGCGGGCCGGCTCAAGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCATGAAGGATCTGGCCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCGAGAGTCTNGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGCAGCACTACGGNAAGTTCACTCGACAGGATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGGNACGTTTCGGAGCCGCTTGCGACGANGCCGGGCGGGTGCCTGTCGGCACACGGGTCATTGAACATTCCCGTGCAACGTACTGNGGCCAAGNTCGATCGTGGGGCGTAGCCGTANACGCCATTGGCACTATGGAGCCGCGTGAAGGTGCTCCGCCGAAAGTACCTGTCAGGCCGAAGTATCTGCTGACAGGTAGGTGGCGCGCAACAGGAACG] [+] EMBL BX468999 [TCGCACGAGGTGTACGGACATGTTCGACATCTTTAGCGCATTTTCAACGAGCTCGAGCTGAACGACGTTAAGCGGTTTGAGATGCTGCTAGAAAACTACCTGTCCGAGATGTCGGTCGGTATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAAGCGGGCCGGCTCAAGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCATGAAGGATCTGGCCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCGAGAGTCTNGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGCAGCACTACGGNAAGTTCACTCGACAGGATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGGNACGTTTCGGAGCCGCTTGCGACGANGCCGGGCGGGTGCCTGTCGGCACACGGGTCATTGAACATTCCCGTGCAACGTACTGNGGCCAAGNTCGATCGTGGGGCGTAGCCGTANACGCCATTGGCACTATGGAGCCGCGTGAAGGTGCTCCGCCGAAAGTACCTGTCAGGCCGAAGTATCTGCTGACAGGTAGGTGGCGCGCAACAGGAACG] consensusID : consensus_8122#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [CTNGTTTCCTGGCAGGGGCATTTCCGGTACGAGCTGTTTCGGCAGCACCGTGTCGTGCCCGTTGCTGGACGTCGGCAAGGACCTTGCTGCTGGAGGTGAACGAGCACTATCTGAAGCCGGGCACAGGTGAAAGTGGTTTGGAAAGTCGGTGCTCGGACCGGAACACAAGCAGCTCTCGAAGGACGGTGAAAACTGGACGACTTTTGCGTTGCAATAAGGAGGAAGTGCTGCTGTGTGTCTAATAAAAATGATGTTCTACTTNAGTCCGTCGGGCCGATCTGCTCGGNCAA] [-] EMBL AL696674 [CTNGTTTCCTGGCAGGGGCATTTCCGGTACGAGCTGTTTCGGCAGCACCGTGTCGTGCCCGTTGCTGGACGTCGGCAAGGACCTTGCTGCTGGAGGTGAACGAGCACTATCTGAAGCCGGGCACAGGTGAAAGTGGTTTGGAAAGTCGGTGCTCGGACCGGAACACAAGCAGCTCTCGAAGGACGGTGAAAACTGGACGACTTTTGCGTTGCAATAAGGAGGAAGTGCTGCTGTGTGTCTAATAAAAATGATGTTCTACTTNAGTCCGTCGGGCCGATCTGCTCGGNCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8122#0 --ACAAGAACGTGCCGGACATGTTCGACATCTTTAGGCGCATTTTCAACGAGCTCGAGCT 58 consensus_8122#1 TCGCACGAGGTGTACGGACATGTTCGACATCTTTAG-CGCATTTTCAACGAGCTCGAGCT 59 consensus_8122#2 ------------------------------------------------------------ consensus_8122#0 GAACGACGTTAAGCGGTTTGAGATGCTGCTAGAAAACTACCTGTCCGAGATGTCGGTCGG 118 consensus_8122#1 GAACGACGTTAAGCGGTTTGAGATGCTGCTAGAAAACTACCTGTCCGAGATGTCGGTCGG 119 consensus_8122#2 ------------------------------------------------------------ consensus_8122#0 TATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAGGC 178 consensus_8122#1 TATCGCCCAGTCCGGGCACATGTACGCGATGCAGAACGCGAACGGGTTGGTAACGGAAGC 179 consensus_8122#2 -----------------------------------------CTNGTTTCCTGGCAGGGGC 19 * ** * * * ** consensus_8122#0 GGGCCGGCTCAGGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCAT-GAAGGATCTGG 237 consensus_8122#1 GGGCCGGCTCAAGGAGCGGCTGATGGGCATCGAGCATCTCGCCTTCAT-GAAGGATCTGG 238 consensus_8122#2 ATTTCCGGT--ACGAGCTGTT--TCGGCAGC-ACCGTGTCGTGCCCGTTGCTGGACGTCG 74 * * * **** * * * **** * * * * *** * * * *** * * consensus_8122#0 CCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCG 297 consensus_8122#1 CCCAGCGCCATTCGGCCGAGGAAATTCTGGACAAATGCCGCTCGATTGCGAAGCTGTTCG 298 consensus_8122#2 GCAAGGACCTTGCTGCTGGAGG-----TGAACGAGCACTATCTGA------AGCCGGGCA 123 * ** ** * * ** * * ** ** * * ** *** * * consensus_8122#0 AGGAGTCGGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGC 357 consensus_8122#1 AGAGTCTNGGAATGCGCTGCGCACTTAACTTTACGCTCACCTCGGAGCAGCAAACGGTGC 358 consensus_8122#2 CAGGT----GAAAGTGGTTTGGA---AAGTCGGTGCTCGGACCGGAACACAAGCAGCTCT 176 *** * * * * * ** * **** **** ** * * * consensus_8122#0 AGCACTACGGCAAGTTCA-TCGACAGCATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGG 416 consensus_8122#1 AGCACTACGGNAAGTTCACTCGACAGGATTCCCGTGCGCAGTACGCAGGCGAGGGTTTGG 418 consensus_8122#2 CGAAGGACGGTGAA--AACTGGACGACTTTTGCGT-TGCAATAAGGAGG--AAGTGCTGC 231 * * **** * * * *** ** *** *** ** * *** * * ** consensus_8122#0 AACGTTTCGGAGCCGCTTGCGACGACGCCGG-CGGGTGCCTGCCGCCACACGG-TCAT-G 473 consensus_8122#1 NACGTTTCGGAGCCGCTTGCGACGANGCCGGGCGGGTGCCTGTCGGCACACGGGTCATTG 478 consensus_8122#2 TGTGTGTCTAA-----TAAAAATGATGTTCTACTTNAGTCCGTCGGGCCGATC-TGCTCG 285 ** ** * * * ** * * * * * ** * * * * consensus_8122#0 AACATTCCCGT-CAAC-TACTGCGCC--AAGTCGATCGTGGC-CGTC-CCGTACAC-CCA 526 consensus_8122#1 AACATTCCCGTGCAACGTACTGNGGCCAAGNTCGATCGTGGGGCGTAGCCGTANACGCCA 538 consensus_8122#2 GNCAA------------------------------------------------------- 290 ** consensus_8122#0 TCGCCACTATGC-GCCGC-TGAAGGTGCTC-GC--GAAGTACCTGTCGGCC--AAGTATC 579 consensus_8122#1 TTGGCACTATGGAGCCGCGTGAAGGTGCTCCGCCGAAAGTACCTGTCAGGCCGAAGTATC 598 consensus_8122#2 ------------------------------------------------------------ consensus_8122#0 TGCTGCC-----GGTGGTGCGCGAACAGAACGGTGCGTACGGTGCGGGTGCGAAAATCAC 634 consensus_8122#1 TGCTGACAGGTAGGTGGCGCGCAACAGGAACG---------------------------- 630 consensus_8122#2 ------------------------------------------------------------ consensus_8122#0 GTCGGACGGGCTGTTCAACTTCTACAGCTACCGCGATCCGAACTCGCGCACCACGCTGGA 694 consensus_8122#1 ------------------------------------------------------------ consensus_8122#2 ------------------------------------------------------------ consensus_8122#0 CGTGTTCGATGAGGCGTACAGGTGGAACGTGCGCACCGTGCCGCAGATGGACGAGCAGAC 754 consensus_8122#1 ------------------------------------------------------------ consensus_8122#2 ------------------------------------------------------------ consensus_8122#0 GCTGTTCGAGGCGAAGCTGGGCGTGCTGCAGCAGCTGGACGTGCCGATTGCGCCGCTCGA 814 consensus_8122#1 ------------------------------------------------------------ consensus_8122#2 ------------------------------------------------------------ consensus_8122#0 GCGGGGCATGGATCTGTTCCGGCAGGGCATTTCCGACGAGCTGTTCGGGCAGCACCGTGC 874 consensus_8122#1 ------------------------------------------------------------ consensus_8122#2 ------------------------------------------------------------ consensus_8122#0 GGCCGTGCTGGACGTCGGCAAGGACCTGCTGCTGGAGGTCAACGAGCACTATCTGAAGCC 934 consensus_8122#1 ------------------------------------------------------------ consensus_8122#2 ------------------------------------------------------------ consensus_8122#0 GGGCGCGGTGAAGGTGGTTGGGAAGTCGGTGCTCGGACCGGAAAACAA 982 consensus_8122#1 ------------------------------------------------ consensus_8122#2 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||