These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 804 fasta sequence [CTTTGAGGTCCAGCAAACAGGAACTTTTCTAGGGTGGAAAATTAATACTTTTTCATGTCCAAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGAGAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAACTAGATCGTGATTACAAAGCCGAAAAGGAAAGC-ATCCTACGGG-AGCGAGAAG--CAACCAGCAAGGGAAATGCACCCTGACCCGAGACGACCGCTTCGAGTCCCGAAACGAAACTGGTTCCAAAGAAATCCCCGTACGTTCAGTTCCCTTCTAACCGGCACCGCCCTACTGATATTCTTTTCCAAACCTCTATACGACGCGTTTATTGCCGATCCCGTACCGGGTGCATTGCCGCCACGCGAAATTCGTTCGATACGCATTGGACCGAAGTAGGCAGTGAAGGAGAATCGCGGTGTTGTTAGCTCCTTTTGCCGTACCGTGCTTCGCAATGGAATCAGTGAAACGGGCCAACCAGCGGCTTCGCAGTTATCCACTGTTAATGGCCAAGTGCTCAGTGGCCGCCGCCGCGTACGCTACATGCGTGACAACCGATCTTAATGTAGCGCATCGTTCATGCGATAAAGAATTTAACAACTTCAAAGAGTGCATGAGGAAAGCCGCTATCGAAATGAAAACAAAGTTGTAGAAAGTTGACTTGTGTGAACGAAGCTAACAAACGTAGAAATCAGTTTAGATAACGAATG] [+] EMBL BX619761 [CTTTGAGGTTCAGCAAACAGGAACTTTTCTAGGGTGGAAAATTAATACTTTTTCATGTCCAAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGAGAACACAACTACGACNAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAACTAGATCGTGATTACAAAGCCGAAAAGGAAAGCNATCCTACGGGAAGCGAGAAGCCCACCCAG ] [+] EMBL BM598411 [ CCGGCAAACAGGAACTTTTCTAGGGTGGAAAATTAATACTTTTTCATGTCCAAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGAGAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAACTAGATCGTGATTACAAAGCCGAAAAGGAAAGC ATCCTACGGG AGCGAGAAG CAACCAGCAAGGGAAATGCACCCTGACCCGAGACGACCGCTTCGAGTCCCGAAACGAAACTGGTTCCAAAGAAATCCCCGTACGTTCAGTTCCCTTCTAACCGGCACCGCCCTACTGATATTCTTTTCCAAACCTCTATACGACGCGTTTATTGCCGATCCCGTACCGGGTGCATTGCCGCCACGCGAAATTCGTTCGATACGCATTGGACCGAAGTAGGCAGTGAAGGAGAATCGCGGTGTTGTTAGCTCCTTTTGCCGTACCGTGCTTCGCAATGGAATCAGTGAAACGGGCCAACCAGCGGCTTCGCAGTTATCCACTGTTAATGGCCAAGTGCTCAGTGGCCGCCGCCGCGTACGCTACATGCGTGACAACCGATCTTAATGTAGCGCATCGTTCATGCGATAAAGAAT ] [+] EMBL BM610804 [ CCGGCAAACAGGAACTTTTCTAGGGTGGAAAATTAATACTTTTTCATGTCCAAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGAGAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAACTAGATCGTGATTACAAAGCCGAAAAGGAAAGC ATCCTACGGG AGCGAGAAG CAACCAGCAAGGGAAATGCACCCTGACCCGAGACGACCGCTTCGAGTCCCGAAACGAAACTGGTTCCAAAGAAATCCCCGTACGTTCAGTTCCCTTCTAACCGGCACCGCCCTACTGATATTCTTTTCCAAACCTCTATACGACGCGTTTATTGCCGATCCCGTACCGGG ] [+] EMBL BM590244 [ ccgCAGCAAACAGGAACTTTTCTAGGGTGGAAAATTAATACTTTTTCATGTCCAAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGAGAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAACTAGATCGTGATTACAAAGCCGAAAAGGAAAGC ATCCTACGGG AGCGAGAAG CAACCAGCAAGGGAAATGCACCCTGACCCGAGACGACCGCTTCGAGTCCCGAAACGAAACTGGTTCCAAAGAAATCCCCGTACGTTCAGTTCCCTTCTAACCGGCACCGCCCTACTGATATTCTTTTCCAAACCTCTATACGACGCGTTTATTGCCGATCCCGTACCGGGTGCATTGCCGCCACGCGAAATTCGTTCGATACGCATTGGACCGAAGTAGGCAGTGAAGGAGAATCGCGGTGTTGTTAGCTCCTTTTGCCGTACCGTGCTTCGCAATGGAATCAGTGAAACGGGCCAACCAGCGGCTTCGCAGTTATCCACTGTTAATGGCCAAGTGCTCAGTGGCCGCCGCCGCGTACGCTACATGCGTGACAACCGATCTTAATGGAGCGCATCGTTCATGCGATAAAG ] [+] EMBL BM642432 [ ccgCAGGAACTTTTCTAGGGTGGAAAATTAATACTTTTTCATGTCCAAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGAGAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAACTAGATCGTGATTACAAAGCCGAAAAGGAAAGC ATCCTACGGG AGCGAGAAG CAACCAGCAAGGGAAATGCACCCTGACCCGAGACGACCGCTT ] [+] EMBL BM629797 [ ccgCTAGGGTGGAAAATTAATACTTTTTCATGTCCAAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGAGAACACAACTACGCCGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGa ] [+] EMBL BX617953 [ GGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAACTAGATCGTGATTACAAAGCCGAAAAGGAAAGC ATCCTACGGG AGCGAGAAG CAACCAGCAAGGGAAATGCACCCTGACCCGAGACGACCGCTTCGAGTCCCGAAACGAAACTGGTTCCAAAGAAATCCCCGTACATTCAGTTCCCTTCTAACCGGCACCGCCCTACTGATATTCTTTTCCAAACCTCTATACGACGCGTTTATTGCCGATCCCGTACCGGGTGCATTGCCGCCACGCGAAATTCGTTCGATACGCATTGGACCGAAGTAGGCAGTGAAGGAGAATCGCGGTGTTGTTAGCTCCTTTTGCCGTACCGTGCTTCGCAATGGAATCAGTGAAACGGGCCAACCAGCGGCTTCGCAGTTATCCACTGTTAATGGCCAAGTGCTCAGTGGCCGCCGCCGCGTACGCTACATGCGTGACAACCGATCTTAATGTAGCGCATCGTTCATGCGATAAAGAATTTAACAACTTCAAAGAGTGCATGAGGAAAGCCGCTATCGAAATGAAAACAAAGTTGTAGAAAGTTGACTTGTGTGAACGAAGCTAACAAACGTAGAAATCAGTTTAGATAACGAATG] consensusID : consensus_8139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [ATCCCCGAGGTTAGTGGAAAATTATACTTTTTCATGTCAAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGAGAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAAACTAGATCGTGAATTTACAAAGCCGAACAAGGGAACAGCATTCTACGGGAGGCGAGAAGCAACCCAGGCAAGGGGAAATGGCACCCTGACCCGGAGACCGACCGCTTCGAGTCCGAAACGAAACTGGGTTCCAAAAGAAATCCCCGGTAACGTTTCAGTNTCCCCTTCTAAACCGGAAACGGGCCTTAACTGGCATATTCTTTTCCAAACCTCTATACGACCGCGTTTATTGCCGATCCCGTACCGGGTGCATTTGCCGACCACGCGCAAATTCGTACGATACGCATTGGACCGAANGTAANGACAGTGAAGGAGAATCGCGGNTGTACGTTAGCTCCTTTAGCGGNACCGTGCTTCGCAATG] [+] EMBL AL695733 [ATCCCCGAGGTTAGTGGAAAATTATACTTTTTCATGTCAAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGAGAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAAACTAGATCGTGAATTTACAAAGCCGAACAAGGGAACAGCATTCTACGGGAGGCGAGAAGCAACCCAGGCAAGGGGAAATGGCACCCTGACCCGGAGACCGACCGCTTCGAGTCCGAAACGAAACTGGGTTCCAAAAGAAATCCCCGGTAACGTTTCAGTNTCCCCTTCTAAACCGGAAACGGGCCTTAACTGGCATATTCTTTTCCAAACCTCTATACGACCGCGTTTATTGCCGATCCCGTACCGGGTGCATTTGCCGACCACGCGCAAATTCGTACGATACGCATTGGACCGAANGTAANGACAGTGAAGGAGAATCGCGGNTGTACGTTAGCTCCTTTAGCGGNACCGTGCTTCGCAATG] consensusID : consensus_8139#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [CCGAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGCGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGGTCCGGCATTCAACTAGATCGTGATTACAAAGCCGAAAAGGAAAGCATCCTACGGGAGCGAGAAGCAACCAGCAAGGGAAATGCACCCTGACCCGAGACGACCGCTTCGAGTCCCGAAACGAAACTGGTTCCAAAGAAATCCCCGTACGTTCAGTTCCCTTCTAACCGGCACCGCCATACTGATATTCTTTTCCAAACCTCTATACGACGCGTTTATTGCCGATCCCGTACCGGGTGCATTACCGCCACGCGAAATTCGTTCGATACGCATTGGACCAAAGTAGGCAGTGTTGTTAGCTCCTTTTGCCGTACCGTGCTTCGCAATGGAATCAGTGAAACGGGCCAACCAGCGGCTTCGCAGTTATCCACTGTTAATGGCCAAGTGCTCAGTTGCCGGCGGCGCGTACGCT] [+] EMBL BM608386 [CCGAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGCGGCAATGCTGTCTGAAGTGGCACAAGGTATCACTTTGCTGGTCCGGCATTCAACTAGATCGTGATTACAAAGCCGAAAAGGAAAGCATCCTACGGGAGCGAGAAGCAACCAGCAAGGGAAATGCACCCTGACCCGAGACGACCGCTTCGAGTCCCGAAACGAAACTGGTTCCAAAGAAATCCCCGTACGTTCAGTTCCCTTCTAACCGGCACCGCCATACTGATATTCTTTTCCAAACCTCTATACGACGCGTTTATTGCCGATCCCGTACCGGGTGCATTACCGCCACGCGAAATTCGTTCGATACGCATTGGACCAAAGTAGGCAGTGTTGTTAGCTCCTTTTGCCGTACCGTGCTTCGCAATGGAATCAGTGAAACGGGCCAACCAGCGGCTTCGCAGTTATCCACTGTTAATGGCCAAGTGCTCAGTTGCCGGCGGCGCGTACGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8139#0 CTTTGAGGTCCAGCAAACAGGAACTTTTCTAGGGTGGAAAATTAATACTTTTTCATGTCC 60 consensus_8139#2 ------------------------------------------------------------ consensus_8139#1 ----------------------ATCCCCGAGGTTAGTGGAAAATTATACTTTTTCATGTC 38 consensus_8139#0 AAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGA 120 consensus_8139#2 ----------------------------------------------------------CC 2 consensus_8139#1 AAAAGTAAACCCAAAGATCCGTGCAAACCGGCTGCCTGTAAAATTCAAACCTGTCTGAGA 98 consensus_8139#0 GAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGT 180 consensus_8139#2 GAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGCGGCAATGCTGT 62 consensus_8139#1 GAACACAACTACGACGAGGTAAAGTGCTACGATGTCATCGACGATATGAGGCAATGCTGT 158 ************************************************ *********** consensus_8139#0 CTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAA-CTAGATCGTGA--TTAC 237 consensus_8139#2 CTGAAGTGGCACAAGGTATCACTTTGCTGGTCCGGCATTCAA-CTAGATCGTGA--TTAC 119 consensus_8139#1 CTGAAGTGGCACAAGGTATCACTTTGCTGTTCCGGCATTCAAACTAGATCGTGAATTTAC 218 ***************************** ************ *********** **** consensus_8139#0 AAAGCCGAA-AAGGAAA--GCATCCTACGGGAG-CGAGAAGCAACC--AGCAAGGGAAAT 291 consensus_8139#2 AAAGCCGAA-AAGGAAA--GCATCCTACGGGAG-CGAGAAGCAACC--AGCAAGGGAAAT 173 consensus_8139#1 AAAGCCGAACAAGGGAACAGCATTCTACGGGAGGCGAGAAGCAACCCAGGCAAGGGGAAA 278 ********* **** ** **** ********* ************ ******* ** consensus_8139#0 --GCACCCTGACCCGAGA--CGACCGCTTCGAGTCCCGAAACGAAACTGGTTCC--AAAG 345 consensus_8139#2 --GCACCCTGACCCGAGA--CGACCGCTTCGAGTCCCGAAACGAAACTGGTTCC--AAAG 227 consensus_8139#1 TGGCACCCTGACCCGGAGACCGACCGCTTCGAGTCC-GAAACGAAACTGGGTTCCAAAAG 337 ************* **************** ************* * * **** consensus_8139#0 AAATCCCCGT--ACGTT-CAGTT--CCCTTCTAA-CCGGCACCG---CCCTACTG--ATA 394 consensus_8139#2 AAATCCCCGT--ACGTT-CAGTT--CCCTTCTAA-CCGGCACCG---CCATACTG--ATA 276 consensus_8139#1 AAATCCCCGGTAACGTTTCAGTNTCCCCTTCTAAACCGGAAACGGGCCTTAACTGGCATA 397 ********* ***** **** ********* **** * ** * **** *** consensus_8139#0 TTCTTTTCCAAACCTCTATACGAC-GCGTTTATTGCCGATCCCGTACCGGGTGCATT-GC 452 consensus_8139#2 TTCTTTTCCAAACCTCTATACGAC-GCGTTTATTGCCGATCCCGTACCGGGTGCATT-AC 334 consensus_8139#1 TTCTTTTCCAAACCTCTATACGACCGCGTTTATTGCCGATCCCGTACCGGGTGCATTTGC 457 ************************ ******************************** * consensus_8139#0 CG-CCACGCG-AAATTCGTTCGATACGCATTGGACCGAAGT---AGGCAGTGAAGGAGAA 507 consensus_8139#2 CG-CCACGCG-AAATTCGTTCGATACGCATTGGACCAAAGT---AGGCAGTG-------- 381 consensus_8139#1 CGACCACGCGCAAATTCGTACGATACGCATTGGACCGAANGTAANGACAGTGAAGGAGAA 517 ** ******* ******** **************** ** * ***** consensus_8139#0 TCGCGGTGTT--GTTAGCTCCTTTTGCCGTACCGTGCTTCGCAATGGAATCAGTGAAACG 565 consensus_8139#2 --------TT--GTTAGCTCCTTTTGCCGTACCGTGCTTCGCAATGGAATCAGTGAAACG 431 consensus_8139#1 TCGCGGNTGTACGTTAGCTCCTTTAGCGGNACCGTGCTTCGCAATG-------------- 563 * ************ ** * **************** consensus_8139#0 GGCCAACCAGCGGCTTCGCAGTTATCCACTGTTAATGGCCAAGTGCTCAGTGGCCGCCGC 625 consensus_8139#2 GGCCAACCAGCGGCTTCGCAGTTATCCACTGTTAATGGCCAAGTGCTCAGTTGCCGGCGG 491 consensus_8139#1 ------------------------------------------------------------ consensus_8139#0 CGCGTACGCTACATGCGTGACAACCGATCTTAATGTAGCGCATCGTTCATGCGATAAAGA 685 consensus_8139#2 CGCGTACGCT-------------------------------------------------- 501 consensus_8139#1 ------------------------------------------------------------ consensus_8139#0 ATTTAACAACTTCAAAGAGTGCATGAGGAAAGCCGCTATCGAAATGAAAACAAAGTTGTA 745 consensus_8139#2 ------------------------------------------------------------ consensus_8139#1 ------------------------------------------------------------ consensus_8139#0 GAAAGTTGACTTGTGTGAACGAAGCTAACAAACGTAGAAATCAGTTTAGATAACGAATG 804 consensus_8139#2 ----------------------------------------------------------- consensus_8139#1 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||