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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8163#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1545 fasta sequence
[CCG-GCAGTTCGTGCATTAAGACAGAGACAGGAGCTAAGGGTTTTGGGTGTTGCTGTTCAGTTTCACTTTCTCGTTCGATTATGGGTGCTCTAGGGGCGATAGTGCTGGCCATCATCGTGCGGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGTGTACCATCGGCAGGATATGAAGCGAGGGGAATTCGATTACGGTTACCATGTGCAGACAGTGAACAATCAGTTCCAGCACAAGGTAAAGGGCCCGGATGATGTGACGTACGGTTGCTACGGCTACGTCGATCCCTCCAACCGCAAGCACCTCGTGTACTATGTCGCCGATCGTATGGGCTACCGGATCATCTTCCCGAACCGACCCACCAAGATCTTCACCGCCAAGCTTGCCGACAGTTTGAACAAGCTGGACGGTGCTGTCAAGGGTAAGGACTACGACGAGCAGGTGGTAGAGTGGAACAATCTCTACATGCCCGAGTCTTGCTTTCGGCTGAACGAAATTCTCGAACCTGCCGCCAGCAATCAGGCCCCCGTGCAGAAGGTTGCTCCCGGGTCACCGACCGTTCCTACGACGACTCACGTGACGGCTCAACCGGCGGCGCCTGCATTGCCTCAGCCAACGCAGTACACGATTCCAACCACACCCCGCACGTACGTCGATCTTCGTGGATCAGGATCGGAGGCTACCGATCGCCACGTCGGCGAAAACGGGCTCGGGGAGCAGCAACCCCTGTACCCCGGTATCTACGTGCAGGGCAGTAGCAACCACCAGCAGGGACAGGAGCGTCTCGATCAAAGCGGCTACCAGAATGCCGGCGGACAGCAGCAGCACCAGCAGCAGCAACCTCCCCAAGGCTGGAACCAGGGATCGCTCCCGGACATTAATCCGGCCAACATCAATCTGGACCAGTTCAACGGGCACGTCTATCCCATCCACACCGGTGGCTACACGGGCGAAGACCAGGGTGCAGCAGGCTACCAGACCACGGCCGGCCAGTTGGCCGCCTCCTCCCAGTACAGCCTAAACATTACGCAGCTTTTGGCCCAGATCGAAGCAGTCAATTCGCAGGTCATCACGCTGAACATGCTGCTGGCCGGCATGGCTAACAATCCGACGGCCTACAGCAACGCGAACGAAAACTCGTGCCGCAGCGTGGTCCAGCTGCTCAAGACGCAAAAGCGCACCCCGCAGCTTGTCTACGTGCCGATCCTAATCCCGTACGCCGAGGGACAGTACAACATTAATCAACCGATCGCACCGCCGGCCCGGTCGGACGCGTACTGAGGTCAGCCGACGAAGGGTGGATGTCACAACTGTCGGGGCTGATAAGCGCCGAAGCGTGGTTGTCTGGTGTGTTTCC--CTTTTTTTAGGCTGGTGCTGCTCCAAACGGCAATTAGACAGTGCTAAAGAGAAGGCTTGGAGGGGAAGATGTTAATCGTTTCATGCGTGATGATTATGTGCGAAACGAGGCGGAATGTTTAATTCGTTGGTCGAGTGATTGCGAACGCAAAGATGAATGGGAACCGTG]
[+] EMBL BM609281 [CCGAGCAGTTCGTGCATTAAGACAGAGACAGGAGCTAAGGGTTTTGGGTGTTGCTGTTCAGTTTCACTTTCTCGTTCGATTATGGGTGCTCTAGGGGCGATAGTGCTGGCCATCATCGTGCGGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGTGTACCATCGGCAGGATATGAAGCGAGGGGAATTCGATTACGGTTACCATGTGCAGACAGTGAACAATCAGTTCCAGCACAAGGTAAAGGGCCCGGATGATGTGACGTACGGTTGCTACGGCTACGTCGATCCCTCCAACCGCAAGCACCTCGTGTACTATGTCGCCGATCGCATGGGCTACCGGATCATCTTCCCGAACCGACCCACCAAGATCTTCACCGCCAAGCTTGCCGACAGTTTGAACAAGCTGGACGGTGCTGTCAAGGGTAAGGACTACGACGAGCAGGTGGTAGAGTGGAACAATCTCTACATGCCCGAGTCTTGCTTTCGGCTGAACGAAATTCTCGAACCTGCCGCCAGCAATCAGGCCCCCGTGCAGAAGGTTGCTCCCGGGTCACCGACCGCTCCTGCGACGACTCACGTGACGGCTCAACCGGCGGCGCCTGCATTGCCTCAGCCAACGCAGTACACGATTCCAACCACACCTCGCACGTACGTCGATCTTCGTGG ]
[+] EMBL BM582134 [CCG GCAGTTCGTGCATTAAGACAGAGACAGGAGCTAAGGGTTTTGGGTGTTGCTGTTCAGTTTCACTTTCTCGTTCGATTATGGGTGCTCTAGGGGCGATAGTGCTGGCCATCATCGTGCGGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGTGTACCATCGGCAGGATATGAAGCGAGGGGAATTCGATTACGGTTACCATGTGCAGACAGTGAACAATCAGTTCCAGCACAAGGTAAAGGGCCCGGATGATGTGACGTACGGTTGCTACGGCTACGTCGATCCCTCCAACCGCAAGCACCTCGTGTACTATGTCGCCGATCGCATGGGCTACCGGATCATCTTCCCGAACCGACCCACCAAGATCTTCACCGCCAAGCTTGCCGACAGTTTGAACAAGCTGGACGGTGCTGTCAAGGGTAAGGACTACGACGAGCAGGTGGTAGAGTGGAACAATCTCTACATGCCCGAGTCTTGCTTTCGGCTGAACGAAATTCTCGAACCTGCCGCCAGCAATCAGGCCCCCGTGCAGAAGGTTGCTCCCGGGTCACCGACCGCTCCTGCGACGACTCACGTGACGGCTCAACCGGCGGCGCCTGCATTGCCTCAGCCAACGCAGTACACGATTCCAACCACACCTCGCACGT ]
[+] EMBL BM596120 [ ccgAGTTCGTGCATTAAGACAGAGACAGGAGCTAAGGGTTTTGGGTGTTGCTATTCTGCTTCACTTTCTCGTTCAATTATGGGTGCTCTAGGGGCGATAGTGCTGGCCATCATCGTGCGGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGTGTACCATCGGCAGGATATGAAGCGAGGGGAATTCGATTACGGTTACCATGTGCAGACAGTGAACAATCAGTTCCAGCACAAGGTAAAGGGCCCGGATGATGTGACGTACGGTTGCTACGGCTACGTCGATCCCTCCAACCGCAAGCACCTCGTGTACTATGTCGCCGATCGTATGGGCTACCGGATCATCTTCCCGAACCGACCCACCAAGATCTTCACCGCCAAGCTTGCCGACAGTTTGAACAAGCTGGACGGTGCTGTCAAGGGTAAGGACTACGACGAGCAGGTGGTAGAGTGGAACAATCTCTACATGCCCGAGTCTTGCTTTCGGCTGAACGAAATTCTCGAACCTGCCGCCAGCAATCAGGCCCCCGTGCAGAAGGTTGCTCCCGGGTCACCGACCGTTCCTACGACGACTCACGTGACGGCTCAACCGGCGGCGCCTGCATTGCCTCAGCCAACGCAGTACACGATTCCAACCACACCCCGCACGTA ]
[+] EMBL BX607198 [ GGAGCTAAGGGTTTTGGGTGTTGCTGTTCAGTTTCACTTTCTCGTTCAATTATGGGTGCTCTAGGGGCGATAGTGCTGGCTATCATCGTGCGGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGTGTACCATCGGCAGGATATGAAGCGAGGGGAATTCGATTACGGTTACCATGTGCAGACAGTGAACAATCAGTTCCAGCACAAGGTAAAGGGCCCGGATGATGTGACGTACGTTTGCTACGGCTACGTCGATCCCTCCAACCGCAAGCACCTCGTGTACTATGTCGCCGATCGTATGGGCTACCGGATCATCTTCCCGAACCGACCCACCAAGATCTTCACCGCCAAGCTTGCCGACAGTTTGAACAAGCTGGACGGTGCTGTCAAGGGTAAGGACTACGACGAGCAGGTGGTGGAGTGGAACAATCTCTACATGCCCGAGTCTTGCTTCCGGTTGAACGAAATTCTCGAACCTGCCGCCAGCAATCAGGCCCCCGTGCAGAAGGTTGCTCCCGGGTCACCGACCGTTCCTACGACGACTCACGTGACGGCTCAACCGGCGGCACCTGCATTGCCTCAGCCAACGCAGTACACGATTCCAACCACACCCCGCACGTACGTCGATCTTCGTGGATCAGGATCGGAGGCTACCGATCGCCACGTCGGCGAAAACGGGCTCGGGGAGCAGCAAC ]
[+] EMBL BX603322 [ TTATGGGTGCTCTAGGGGCGATAGTGCTGGCTATCATCGTGCGGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGTGTACCATCGGCAGGATATGAAGCGAGGGGAATTCGATTACGGTTACCATGTGCAGACAGTGAACAATCAGTTCCAGCACAAGGTAAAGGGCCCGGATGATGTGACGTACGGTTGCTACGGCTACGTCGATCCCTCCAACCGCAAGCACCTCGTGTACTATGTCGCCGATCGTATGGGCTACCGGATCATCTTCCCGAACCGACCCACCAAGATCTTCACCGCCAAGCTTGCCGACAGTTTGAACAAGCTGGACGGTGCTGTCAAGGGTAAGGACTACGACGAGCAGGTGGTGGAGTGGAACAATCTCTACATGCCCGAGTCTTGCTTCCG ]
[+] EMBL BM630885 [ ccGCACGTGAATCAACCGAATGCCGAGGTGTACCATCGGCAGGATATGAAGCGAGGGGAATTCGATTACGGTTACCATGTGCAGACAGTGAACAATCAGTTCCAGCACAAGGTAAAGGGCCCGGATGATGTGACGTAC GTTGCTACGGCTACGTCGATCCCTCCAACCGCAAGCACCTCGTGTACTATGTCGCCGATCGTATGGGCTACCGGATCATCTTCCCGAACCGACCCACCAAGATCTTCACCGCCAAGCTTGCCGACAGTTTGAACAAGCTGGACGGTGCTGTCAAGGGTAAGGACTACGACGAGCAGGTGGTAGAGTGGAACAATCTCTACATGCCCGAGTCTTGCTTTCGGCTGAACGAAATTCTCGAACCTGCCGCCAGCAATCAGGCCCCCGTGCAGAAGGTTGCTCCCGGGTCACCGACCGTTCCTACGACGACTCACGTGACGGCTCAACCGGCGGCGCCTGCATTGCCTCAGCCAACGCAGTACACGATTCCAACCACACCCCGCACGTACGTCGATCTTCGTGGATCAGGATCGGAGGCTACCGATCGCCACGTCGGTGAAAACGGGCTCGGCGAGCAGCAACCCCTGTACCCCGGTATCTACGTGCAGGGCAGTAGCAACCACCAGCAGGGACAGGAGCGTCTCGATCAAAG ]
[+] EMBL BX617753 [ GATCTTCGTGGATCAGGATCGGAGGCTACCGATCGCCACGTCGGCGAAAACGGGCTCGGGGAGCAGCAACCCCTGTACCCCGGTATCTACGTGCAGGGCAGTAGCAACCACCAGCAGGGACAGGAGCGTCTCGATCAAGCCGGCTACCAGAATGCCGGCGGACAGCAGCAGCACCAGCAGCAGCAACCTCCCCAAGGCTGGAACCAGGGATCGCTCCCGGACATTAATCCGGCCAACATCAATCTGGACCAGTTCAACGGGCACGTCTATCCCATCCACACCGGTGGCTACACGGGCGAAGACCAGGGTGCAGCAGGCTACCAGACCACGGCCGGCCAGTTGGCCGCCTCCTCCCAGTACAGCCTAAACATTACGCAGCTTTTGGCCCAGATCGAAGCAGTCAATTCGCAGGTCATCACGCTGAACATGCTGCTGGCCGGCATGGCTAACAATCCGACGGCCTACAGCAACGCGAACGAAAACTCGTGCCGCAGCGTGGTCCAGCTGCTCAAGACGCAAAAGCGCACCCCGCAGCTTGTCTACGTGCCGATCCTAATCCCGTACGCCGAGGGACAGTACAACATTAATCAACCGATCGCACCGCCGGCCCGGTCGGACGCGTACTGAGGTCAGCCGACGAAGGGTGGATGTCACAACTGTCGGGGCTGATAAGCGCCGAAGCGTGGTTGTCTGGTGTGTTTCC CTTTTTTTAGGCTGGTGCTGCT ]
[+] EMBL BM605931 [ ccGGTGCAGCAGGCTACCAGACCACGGCCGGCCAGCTTGCCGCCTCCTCCCAGTACAGCCTAAACATTACGCAGCTTTTGGCCCAGATCGAAGCAGTCAATTCGCAGGTCATCACGCTGAACATGCTGCTGGCCGGCATGGCTAACAATCCGACGGCCTACAGCAACGCGAACGAAAACTCGTGCCGCAGCGTGGTCCAGCTGCTCAAGACGCAAAAGCGCACCCCGCAGCTTGTCTACGTGCCGATCCTAATCCCGTACGCCGAGGGACAGTACAACATTAATCAACCGATCGCACCGCCGGCCCGGTCGGACGCGTACCGAGGTCAGCCGACGAAGGGTGGATGTCACAACTGTCGGGGCTGATAAGCGCCGAAGCGTGGTTGTCTGTTGTGTTTCCTTTTTTTTTTAGTCTGTTGCTGCTCCAAACGGCAATTAGACAGTGCTAAAGAGAAGGCTTGGAGGGGAAGATGTTAATCGTTTCATGCGTGATGATTATGTGCGAAACGAGGCGGAATGTTTAATTCGTTGGTCGAGTGATTGCGAACGCAAAGATGAATGGGAACCGTG]
consensusID : consensus_8163#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence
[CAGAATGCCNACGTTATTACAGAGACAGGAGCTAAGGGTTTGGGTGTCGCTGTTCAGTTTCACTTTCTCGTCAATTATGGGTGCTCTAGGGGCGATAGTGCTGGCTATCATCGTGCGGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGTTGTACCATACTGGCAGCGATATTGAATCGCGAGGGCGAACTTCAGATCTACCGGTTACCCAACTTGGTTTGGGCCCAAGGGGAAAACCCAAACGGGGGCTTTTGGGAAAAACCAAAAACATTTACCAAAGGGAGAGTATTNCCCCCAAAGGAGCCAACCAACAAGGGGTTAACACTGGGGGAGGCACACCCACCAGTGGCAAACTTTACGGANAATTTCGGGTTTCGGAAACCCCAGGGGATTTAACCAGGAGGGCTATTAGGCCATTAAACCACGCTGGTCGCTTTTAACCAAGATTTTACCCCTGTGGCAAACCACTTTTCCCACCCACACCATTTTCCCCC]
[+] EMBL AL694545 [CAGAATGCCNACGTTATTACAGAGACAGGAGCTAAGGGTTTGGGTGTCGCTGTTCAGTTTCACTTTCTCGTCAATTATGGGTGCTCTAGGGGCGATAGTGCTGGCTATCATCGTGCGGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGTTGTACCATACTGGCAGCGATATTGAATCGCGAGGGCGAACTTCAGATCTACCGGTTACCCAACTTGGTTTGGGCCCAAGGGGAAAACCCAAACGGGGGCTTTTGGGAAAAACCAAAAACATTTACCAAAGGGAGAGTATTNCCCCCAAAGGAGCCAACCAACAAGGGGTTAACACTGGGGGAGGCACACCCACCAGTGGCAAACTTTACGGANAATTTCGGGTTTCGGAAACCCCAGGGGATTTAACCAGGAGGGCTATTAGGCCATTAAACCACGCTGGTCGCTTTTAACCAAGATTTTACCCCTGTGGCAAACCACTTTTCCCACCCACACCATTTTCCCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8163#0 CCGGCAGTTCGTGCATTAAGACAGAGACAGGAGCTAAGGGTTTTGGGTGTTGCTGTTCAG 60
consensus_8163#1 -CAG-AATGCCNACGTTATTACAGAGACAGGAGCTAAGGGTTT-GGGTGTCGCTGTTCAG 57
* * * * * * *** *********************** ****** *********
consensus_8163#0 TTTCACTTTCTCGTTCGATTATGGGTGCTCTAGGGGCGATAGTGCTGGCCATCATCGTGC 120
consensus_8163#1 TTTCACTTTCTCGT-CAATTATGGGTGCTCTAGGGGCGATAGTGCTGGCTATCATCGTGC 116
************** * ******************************** **********
consensus_8163#0 GGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGT-GTAC 179
consensus_8163#1 GGATGGTGGCGGCAAACACGATGGAGGTGCACGTGAATCAACCGAATGCCGAGGTTGTAC 176
******************************************************* ****
consensus_8163#0 CATCGGCAGGATATGAAGCGAGGGGAATTCGATTACGGTTACCATGTGCAGACAGTGAAC 239
consensus_8163#1 CAT-------ACTGGCAGCGAT----ATTGAATCGCGAGGGCGAACTTCAGAT------C 219
*** * * ***** *** ** ** * * * **** *
consensus_8163#0 AATCAGTTCCAGCACAAGGTAAAGGGCCCGGATGATGTGACGTACGGTTGCTACGGCTAC 299
consensus_8163#1 TACCGGTTACCCAACTTGGTTTGGGCCCAAGGGGAAAACCCAAACGGGGGCTTTTGGGAA 279
* * *** * ** *** ** ** * ** * **** *** * *
consensus_8163#0 GTCGATCCCTCCAACCGCAAGCACCTCGTGTACTATGTCGCCGATCGTATGGGCTACCGG 359
consensus_8163#1 AAA-------CCAAAAACATTTACCAAAGGGAGAGTATTNCCC-CCAAAGGAGCCAACCA 331
**** ** *** * * * * ** * * * ** * *
consensus_8163#0 ATCATCTTCCCGAACCGACCCACCAAGATCTTCACCGCCAAGCTTGCCGACAGTTTGAAC 419
consensus_8163#1 ACAAG------GGGTTAACACTGGGGGAGGCACACCCACCAG-TGGCAAACTTTACGGAN 384
* * * ** * ** **** * ** * ** ** * * *
consensus_8163#0 AAGCTGGACGGTGCTGTCAAGGGTAAGGACTACGACGAGCAGGTGGTAGAGTGGAACAAT 479
consensus_8163#1 AATTTCG--GGTTTCGGAAACCCCAGGGGATTTAACCAGGAGG-GCTA---TTAGGCCAT 438
** * * *** * ** * ** * ** ** *** * ** * * **
consensus_8163#0 CTCTACATGCCCGAGTCTTGCTTTCGGCTGAACGAAATTCTCGAACCTGCCGCCAGCAAT 539
consensus_8163#1 TAAACCACGCTGG----TCGCTTTT-----AACCAAGATTTTACCCCTGTGGCAAACCAC 489
** ** * * ***** *** ** * * **** ** * * *
consensus_8163#0 CAGGCCCCCGTGCAGAAGGTTGCTCCCGGGTCACCGACCGTTCCTACGACGACTCACGTG 599
consensus_8163#1 TTTTCCCACCCACACCATTTTCCCCC---------------------------------- 515
*** * ** * ** * **
consensus_8163#0 ACGGCTCAACCGGCGGCGCCTGCATTGCCTCAGCCAACGCAGTACACGATTCCAACCACA 659
consensus_8163#1 ------------------------------------------------------------
consensus_8163#0 CCCCGCACGTACGTCGATCTTCGTGGATCAGGATCGGAGGCTACCGATCGCCACGTCGGC 719
consensus_8163#1 ------------------------------------------------------------
consensus_8163#0 GAAAACGGGCTCGGGGAGCAGCAACCCCTGTACCCCGGTATCTACGTGCAGGGCAGTAGC 779
consensus_8163#1 ------------------------------------------------------------
consensus_8163#0 AACCACCAGCAGGGACAGGAGCGTCTCGATCAAAGCGGCTACCAGAATGCCGGCGGACAG 839
consensus_8163#1 ------------------------------------------------------------
consensus_8163#0 CAGCAGCACCAGCAGCAGCAACCTCCCCAAGGCTGGAACCAGGGATCGCTCCCGGACATT 899
consensus_8163#1 ------------------------------------------------------------
consensus_8163#0 AATCCGGCCAACATCAATCTGGACCAGTTCAACGGGCACGTCTATCCCATCCACACCGGT 959
consensus_8163#1 ------------------------------------------------------------
consensus_8163#0 GGCTACACGGGCGAAGACCAGGGTGCAGCAGGCTACCAGACCACGGCCGGCCAGTTGGCC 1019
consensus_8163#1 ------------------------------------------------------------
consensus_8163#0 GCCTCCTCCCAGTACAGCCTAAACATTACGCAGCTTTTGGCCCAGATCGAAGCAGTCAAT 1079
consensus_8163#1 ------------------------------------------------------------
consensus_8163#0 TCGCAGGTCATCACGCTGAACATGCTGCTGGCCGGCATGGCTAACAATCCGACGGCCTAC 1139
consensus_8163#1 ------------------------------------------------------------
consensus_8163#0 AGCAACGCGAACGAAAACTCGTGCCGCAGCGTGGTCCAGCTGCTCAAGACGCAAAAGCGC 1199
consensus_8163#1 ------------------------------------------------------------
consensus_8163#0 ACCCCGCAGCTTGTCTACGTGCCGATCCTAATCCCGTACGCCGAGGGACAGTACAACATT 1259
consensus_8163#1 ------------------------------------------------------------
consensus_8163#0 AATCAACCGATCGCACCGCCGGCCCGGTCGGACGCGTACTGAGGTCAGCCGACGAAGGGT 1319
consensus_8163#1 ------------------------------------------------------------
consensus_8163#0 GGATGTCACAACTGTCGGGGCTGATAAGCGCCGAAGCGTGGTTGTCTGGTGTGTTTCCCT 1379
consensus_8163#1 ------------------------------------------------------------
consensus_8163#0 TTTTTTAGGCTGGTGCTGCTCCAAACGGCAATTAGACAGTGCTAAAGAGAAGGCTTGGAG 1439
consensus_8163#1 ------------------------------------------------------------
consensus_8163#0 GGGAAGATGTTAATCGTTTCATGCGTGATGATTATGTGCGAAACGAGGCGGAATGTTTAA 1499
consensus_8163#1 ------------------------------------------------------------
consensus_8163#0 TTCGTTGGTCGAGTGATTGCGAACGCAAAGATGAATGGGAACCGTG 1545
consensus_8163#1 ----------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||