These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8182#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 853 fasta sequence [AGATCGCCCGAGGNCAGCAAGTGGAAGAAGGAAACCAAAAACACGCACACACATTTTTCGATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCGGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCTACTTCTTCTCGTGGCGCGACCCAACGCACCGGGTCGCGGAGAAGGATTGGCTCGATGCGCGCAACTTCTGCCGCCAGCGCTGCATGGACAGCGTGTCCGTCGAGACGAGCCCGGAAAATGAGTGGATCAAGCAGAGAATCGTCG-AGGGCCGGCAAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGG-TTCTGG---ACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACT-GGTCCGAG---GGTGG-CGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGANGAGAACGACGCCCTGCTGAAGTACGTCAAGTACAGCAACCCGAACCTGCGCATCT-AAGAGATNTNGAGAGAGATAGAGAGAGAGAGTAACCCCAAGGGGGATGCATACNACCAACCAACTGACTGCTGCTGGNGATGCAACCCTTTTCTTANTTTCA] [+] EMBL AL932885 [AGATCGCCCGAGGNCAGCAAGTGGAAGAAGGAAACCAAAAACACGCACACACATTTTTCGATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCGGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCTACTTCTTCTCGTGGCGCGACCCAACGCACCGGGTCGCGGAGAAGGATTGGCTCGATGCGCGCAACTTCTGCCGCCAGCGCTGCATGGACAGCGTGTCCGTCGAGACGAGCCCGGAAAATGAGTGGATCAAGCAGAGAATCGTCG AGGGCCGGCAAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGG TTCTGGGAAACGGCCGA ] [+] EMBL AL694829 [ ttGCCCGAGG TTCAAGTGGAAGAAGGAAA CAAAAACACGCACACACATTTTTCGATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCGGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCTACTTCTTCTCGTGGCGCGA CCAACGCACCGGGTCGCGGAGAAGGATTGGCTCGATGCGCGCAACTTCTGCCGCCAGCGCTGCATGGACAGCGTGTCCGTCGAGACGAGCCCGGAAAATGAGTGGATCAAGCAGAGAATCGTCGCAGGGCCGGCAAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGGNTTCTGG ACGGCCGAGCTGCAGAAGCTCG CCCGACGACCGTGCGCAA CAGAACGACTGGGTCCGAGCGCGTTGGNCGGCATCGGT AGCCGCAn ] [+] EMBL BX621632 [ AAGAAGGAAACCAAAAACACGCACACACATTTTTCGATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCGGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCTACTTCTTCTCGTGGCGCGACCCAACGCACCGGGTCGCGGAGAAGGATTGGCTCGATGCGCGCAACTTCTGCCGCCAGCGCTGCATGGACAGCGTGTCCGTCGAGACGAGCCCGGAAAATGAGTGGATCAAGCAGAGAATCGTCG AGGGCCGGCAAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGG TTCTGG ACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACT GGTCCGAG GGTGG CGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGANGAGAACGACGCCCTGCTGAAGTACGTCAAGTACAGCAACCCGAACCTGCGCATCT AAGAGATNTNGAGAGAGATAGAGAGAGAGA ] [+] EMBL BX624597 [ AAACACGCACACACATTTTTCGATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCGGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCTACTTCTTCTCGTGGCGCGACCCAACGCACCGGGTCGCGGAGAAGGATTGGCTCGATGCGCGCAACTTCTGCCGCCAGCGCTGCATGGACAGCGTGTCCGTCGAGACGAGCCCGGAAAATGAGTGGATCAAGCAGAGAATCGTCG AGGGCCGGCAAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGG TTCTGG ACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACT GGTCCGAG GGTGG CGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGT GGTGTGCGA GAGAACGACGCCCTGCTGAAGTACGTCAAGTACAGCA ] [+] EMBL BX627275 [ CACACACATTTTTCGATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCGGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCTACTTCTTCTCGTGGCGCGACCCAACGCACCGGGTCGCGGAGAAGGATTGGCTCGATGCGCGCAACTTCTGCCGCCAGCGCTGCATGGACAGCGTGTCCGTCGAGACGAGCCCGGAAAATGAGTGGATCAAGCAGAGAATCGTCG AGGGCCGGCAAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGG TTCTGG ACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACT GGTCCGAG GGTGG CGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGANGAGAACGACGCCCTGCTG ] [+] EMBL BX628581 [ TACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCGGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCTACTTCTTCTCGTGGCGCGACCCAACGCACCGGGTCGCGGAGAAGGATTGGCTCGATGCGCGCAACTTCTGCCGCCAGCGCTGCATGGACAGCGTGTCCGTCGAGACGAGCCCGGAAAATGAGTGGATCAAGCAGAGAATCGTCG AGGGCCGGCAAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGG TTCTGG ACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACT GGTCCGAG GGTGG CGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGANGAGAACGACGCCCT ] [+] EMBL BX622092 [ ACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCGGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCTACTTCTTCTCGTGGCGCGACCCAACGCACCGGGTCGCGGAGAAGGATTGGCTCGATGCGCGCAACTTCTGCCGCCAGCGCTGCATGGACAGCGTGTCCGTCGAGACGAGCCCGGAAAATGAGTGGATCAAGCAGAGAATCGTCG AGGGCCGGCAAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGG TTCTGG ACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACT GGTCCGAG GGTGG CGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGAGGAGAACGACGCCCTGCTGAAGTACGTCAAGTACAGCAACCCGAACCTGCGCATCTAAAGAGATATAGAGAGAGATAGAGAGAGAGAGTAACCCCAAGGGGGATGCATACNACCAACCAACTGACTGCTGCTGGNGATGCAACCCTTTTCTTANTTTCA] consensusID : consensus_8182#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [CATTTTTCGATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCNGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCAAAAGTACATCTGGACCANCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGGTTCTGGACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACTGGTCCGAGGGTGGCGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGAGGAGAACGACGCCCTGCTGAAGTACNTCAAGTACAGNAACCCGAACCTGCGCATCTAAAGAGATATAGAGAGAGATAGAGAGAGAGAGTAACCCCAAGGGGGATGCATACAACCAAACCAACTGACTGCTGCTGGTGATGCAACCCTTTTCTTATTTCCACT] [+] EMBL BX628073 [CATTTTTCGATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCGGTGGCCCTCGTCNGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCGAATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCAAAAGTACATCTGGACCANCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGGTTCTGGACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACTGGTCCGAGGGTGGCGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGAGGAGAACGACGCCCTGCTGAAGTACNTCAAGTACAGNAACCCGAACCTGCGCATCTAAAGAGATATAGAGAGAGATAGAGAGAGAGAGTAACCCCAAGGGGGATGCATACAACCAAACCAACTGACTGCTGCTGGTGATGCAACCCTTTTCTTATTTCCACT] consensusID : consensus_8182#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence [CCACGAGTTAAGGGCCGGCAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGGTTCTGGACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACTGGTCCGAGGGTGGCGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGAGGAGAACGACGCCCTGCTGAAGTACGTCAAGTACAGCAACCCGAACCTGCGCATCTAAAGAGATATAGAGAGAGATAGAGAGAGAGAGTAACCCAAGGGGGATGCATACAACCAACCAACTGACTGCTGCTGGTGATGCAACCCTTTTCTTATTTCCACTTGCGTTGGCGCATGGTTACACTGACATGATACATATTTATTTGAATTACCGTTTCG] [+] EMBL AL692670 [CCACGAGTTAAGGGCCGGCAAAGTACATCTGGACCAGCGGACGGCTGTGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGGTTCTGGACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACTGGTCCGAGGGTGGCGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCCTCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGACGTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGAGGAGAACGACGCCCTGCTGAAGTACGTCAAGTACAGCAACCCGAACCTGCGCATCTAAAGAGATATAGAGAGAGATAGAGAGAGAGAGTAACCCAAGGGGGATGCATACAACCAACCAACTGACTGCTGCTGGTGATGCAACCCTTTTCTTATTTCCACTTGCGTTGGCGCATGGTTACACTGACATGATACATATTTATTTGAATTACCGTTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8182#0 AGATCGCCCGAGGNCAGCAAGTGGAAGAAGGAAACCAAAAACACGCACACACATTTTTCG 60 consensus_8182#1 ---------------------------------------------------CATTTTTCG 9 consensus_8182#2 ------------------------------------------------------------ consensus_8182#0 ATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCG 120 consensus_8182#1 ATACCAAATCCACCAATCTCACCACTCACAACGAGTATGAAGCAGTTCGTGCTGATAGCG 69 consensus_8182#2 ------------------------------------------------------------ consensus_8182#0 GTGGCCCTCGTCGGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCG 180 consensus_8182#1 GTGGCCCTCGTCNGCCTGACCGCCGCCCAGTTCCCGAACGGACGCACCCTCGACGCACCG 129 consensus_8182#2 ------------------------------------------------------------ consensus_8182#0 AATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGCTAC 240 consensus_8182#1 AATCCGGCCCTGTGCGCCAGCAGAATCATCCACGAGCGGGCACCGGACGGCAAAGGC--- 186 consensus_8182#2 ------------------------------------------------------------ consensus_8182#0 TTCTTCTCGTGGCGCGACCCAACGCACCGGGTCGCGGAGAAGGATTGGCTCGATGCGCGC 300 consensus_8182#1 ------------------------------------------------------------ consensus_8182#2 ------------------------------------------------------------ consensus_8182#0 AACTTCTGCCGCCAGCGCTGCATGGACAGCGTGTCCGTCGAGACGAGCCCGGAAAATGAG 360 consensus_8182#1 ------------------------------------------------------------ consensus_8182#2 ------------------------------------------------------------ consensus_8182#0 TGGATCAAGCAGAGAATCGTCGAGGGCCGGCAAAAGTACATCTGGACCAGCGGACGGCTG 420 consensus_8182#1 -------------------------------AAAAGTACATCTGGACCANCGGACGGCTG 215 consensus_8182#2 -------------CCACGAGTTAAGGGCCGGCAAAGTACATCTGGACCAGCGGACGGCTG 47 ***************** ********** consensus_8182#0 TGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGGTTC 480 consensus_8182#1 TGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGGTTC 275 consensus_8182#2 TGCGACTTCAAGGGCTGCGACCGTCCCGATCTGCAGCCGACGAACATTAACGGTTGGTTC 107 ************************************************************ consensus_8182#0 TGGACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACTGGTCC 540 consensus_8182#1 TGGACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACTGGTCC 335 consensus_8182#2 TGGACGGCCGAGCTGCAGAAGCTCGCCCCGACGACCGTGCGCAACCAGAACGACTGGTCC 167 ************************************************************ consensus_8182#0 GAGGGTGGCGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCC 600 consensus_8182#1 GAGGGTGGCGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCC 395 consensus_8182#2 GAGGGTGGCGGCATCGGTAAGCCGCAGCCGGACAACCGCGAGCTGATCCAGGGCGGTGCC 227 ************************************************************ consensus_8182#0 TCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGAC 660 consensus_8182#1 TCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGAC 455 consensus_8182#2 TCCGAGAACTGTTTGGCCATCCTGAACAACTTCTACGACGACGGTGTCCACTGGCATGAC 287 ************************************************************ consensus_8182#0 GTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGANGAGAACGACGCCCTGCTGAAGTAC 720 consensus_8182#1 GTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGAGGAGAACGACGCCCTGCTGAAGTAC 515 consensus_8182#2 GTCGCCTGCCATCACGTGAAGCCGTGGGTGTGCGAGGAGAACGACGCCCTGCTGAAGTAC 347 *********************************** ************************ consensus_8182#0 GTCAAGTACAGCAACCCGAACCTGCGCATCTAA-GAGATNTNGAGAGAGATAGAGAGAGA 779 consensus_8182#1 NTCAAGTACAGNAACCCGAACCTGCGCATCTAAAGAGATATAGAGAGAGATAGAGAGAGA 575 consensus_8182#2 GTCAAGTACAGCAACCCGAACCTGCGCATCTAAAGAGATATAGAGAGAGATAGAGAGAGA 407 ********** ********************* ***** * ****************** consensus_8182#0 GAGTAACCCCAAGGGGGATGCATACNACCAA-CCAACTGACTGCTGCTGGNGATGCAACC 838 consensus_8182#1 GAGTAACCCCAAGGGGGATGCATACAACCAAACCAACTGACTGCTGCTGGTGATGCAACC 635 consensus_8182#2 GAGTAACCC-AAGGGGGATGCATACAACCAA-CCAACTGACTGCTGCTGGTGATGCAACC 465 ********* *************** ***** ****************** ********* consensus_8182#0 CTTTTCTTANTTTCA--------------------------------------------- 853 consensus_8182#1 CTTTTCTTATTTCCACT------------------------------------------- 652 consensus_8182#2 CTTTTCTTATTTCCACTTGCGTTGGCGCATGGTTACACTGACATGATACATATTTATTTG 525 ********* ** ** consensus_8182#0 ------------- consensus_8182#1 ------------- consensus_8182#2 AATTACCGTTTCG 538 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||