These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [GCAGATTCCCCGCAGTTATTNCTAAGTTACATGAACCGACAATTTCGATTACATCTTGCACCAACTCGCCGATGCTGTCGGATGTCGGACCGGAGGACATTTAAAAGATGAATTCTTCTAAGACAGCGCTTCATATTATTATTCACTGTTCATACCCACCCCTTCGTTGATATCAGCTTTTACCGCAATTAACAGACCCAGGTCCAACAGGCGGTTTGGGACCTTGTGGCGCCACTTTATTGGTCCATTGCAATCATACCTCTTCGCACTCCTCGCAGGCGGACATGCGAAACGCGGAGCTGAACGCCTCATTACCCTGCCGGGACCAGGTAGTGCACACTCGCCACTAACCGGCACAGCCACGCCAGATACGTATGCCGGCGCTNCGACTGAGCAGCTTGCGCACACGCGCACGACGTACANCGTAAGCCCACAGAACCGGAGATATGGCAACTGCGCAANTGACTACTGCGCTTGGGCCCGCCCACTGGCACACTTGGGGNCTCGCGACCCCACACGGGACAAAACGGCNCCAGCACCCATACCACCAAGGACCACAAACCNGCGGCCACACACGCANCCCCGGCANACCCAACCACAGAGCNACCGACTAACNCCAAATNCAAGCCATGGCCCCTAACACTCCGGCGGCAAACCNCNTGGACAAGAGACGCACATAACTTAGAACCCAAACCG] [+] EMBL AL692408 [GCAGATTCCCCGCAGTTATTNCTAAGTTACATGAACCGACAATTTCGATTACATCTTGCACCAACTCGCCGATGCTGTCGGATGTCGGACCGGAGGACATTTAAAAGATGAATTCTTCTAAGACAGCGCTTCATATTATTATTCACTGTTCATACCCACCCCTTCGTTGATATCAGCTTTTACCGCAATTAACAGACCCAGGTCCAACAGGCGGTTTGGGACCTTGTGGCGCCACTTTATTGGTCCATTGCAATCATACCTCTTCGCACTCCTCGCAGGCGGACATGCGAAACGCGGAGCTGAACGCCTCATTACCCTGCCGGGACCAGGTAGTGCACACTCGCCACTAACCGGCACAGCCACGCCAGATACGTATGCCGGCGCTNCGACTGAGCAGCTTGCGCACACGCGCACGACGTACANCGTAAGCCCACAGAACCGGAGATATGGCAACTGCGCAANTGACTACTGCGCTTGGGCCCGCCCACTGGCACACTTGGGGNCTCGCGACCCCACACGGGACAAAACGGCNCCAGCACCCATACCACCAAGGACCACAAACCNGCGGCCACACACGCANCCCCGGCANACCCAACCACAGAGCNACCGACTAACNCCAAATNCAAGCCATGGCCCCTAACACTCCGGCGGCAAACCNCNTGGACAAGAGACGCACATAACTTAGAACCCAAACCG] consensusID : consensus_8187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 650 fasta sequence [TTTGCCCACAGCTCGGGCACATGTGGCCTTTTTATTTTTTTTTTTCTAAGACAGCGCTTCAATTTTTATTCACTGTTCATACCCACCGCTTCGTTGATATCAGTTTTACCGCAATTAACAGACCCACGGTCCACCAGGCGGTTTGGGACCTTGTGGCGCCACTTTTTGGTCCATTGCAATCATCCTCTTCGCACTCCTCGCAGGCGGACATGCGAAACGCGGAGCTGAACGCCTCATTACCCTGCCGGGACAGTAGTGCACACTCGCCACTAACGGCACAGCCACGCCAGATACGTTGCGACGCTTCGCTGGCAGTTGGAAGGAGACGTTTGTAGCCACAGACCGGTTGCACTGGATGATTGGTGGCGCTGAATGGTTGGCAGGAAGTTTTCTCCAGCACGGCAAGATTGTCACAATCTAGATCACTGCTATCGGTACTGCAGGTATAACACTCCAAGCCGTATGCGAGTGGGAAGCACAGCAGTGTGGTAGCAGCAGCTAGCAGGATCGTACACGGCGAAGCTAAGACGATCCTCATCTCGTTCAATTGCAATAGTGGTGCGTTCCTTGAAAGTCCTACTGTTTCGATT--CCAGTCACGATGTGAAGGTTTCCTCTAAATGTGCTACTGATTCGACCGGACGCGTGGGTC] [-] EMBL CNS08OLR [TTTGCCCACAGCTCGGGCACATGTGGCCTTTTTATTTTTTTTTTTCTAAGACAGCGCTTCAATTTTTATTCACTGTTCATACCCACCGCTTCGTTGATATCAGTTTTACCGCAATTAACAGACCCACGGTCCACCAGGCGGTTTGGGACCTTGTGGCGCCACTTTTTGGTCCATTGCAATCATCCTCTTCGCACTCCTCGCAGGCGGACATGCGAAACGCGGAGCTGAACGCCTCATT GCCTGCCGGGACAGTAGGGCACACTCGCCACTAACGGCACAGCCACGCCAGATACGTTGCGATG TTCGCTGGCGGTTGGAAGGAGACGTTTGTAGCCACAGACCGGTTGCACTGGATGATTGGTGGCGCTGAATGGTTGGCAGGAAGTTTTCTCCAGCGCAGCAAGATTGTCACAGTCTAGATCACTGCTATCGGTACTGCAGGTATAACACTCCAAGCCGTATGCGAGTGGGAAGCACATCAGTGTGGTAGCAGCAGCTAGCAGGATCGTACACGGCGAAGCTAAGACGATCCCCATCTCGTTCAATTGCAATAGTGGTGCGTTCCTTGAAAGTCCTACTGTTTCGATT CCAGT ] [-] EMBL CNS08OO7 [ GCACATGTGG CTTTTTATTTTTTTTTTTCTAAGACAGCGCTTCAATTTTTATTCACTGTTCATACCCACCGCTTCGTTGATATCAGTTTTACCGCAATTAACAGACCCACGGTCCACCAGGCGGTTTGGGACCTTGTGGCGCCACTTTTTGGTCCATTGCAATCATCCTCTTCGCACTCCTCGCAGGCGGACATGCGAAACGCGGAGCTGAACGCCTCATT GCCTGCCGGGACAGTAGGGCACACTCGCCACTAACGGCACAGCCACGCCAGATACGTTGCGATG TTCGCTGGCGGTTGGAAGGAGACGTTTGTAGCCACAGACCGGTTGCACTGGATGATTGGTGGCGCTGAATGGTTGGCAGGAAGTTTTCTCCAGCGCAGCAAGATTGTCACAGTCTAGATCACTGCTATCGGTACTGCAGGTATAACACTCCAAGCCGTATGCGAGTGGGAAGCACATCAGTGTGGTAGCAGCAGCTAGCAGGATCGTACACGGCGAAGCTAAGACGATCCCCATCTCGTTCAATTGCAATAGTGGTGCGTTCC ] [-] EMBL BM649346 [ GTTCATACCCACCCCTTCGTTGATATCAGTTTTACCGCAATTAACAGACCCACGGCCCACCAGGCGGTTTGGGACCTTGTGGCGCCACTTTTTGGTCCATTGCAATCATCCTCTTCGCACTCCTCGCAGGCGGACATGCGAAACGCGGAGCTGAACGCCTCATTACCCTGCCGGGACAGTAGTGCACACTCGCCACTGACGGCGCAGCCACGCCAGATACGTTGCGACGCTTCGCTGGCAGTTGGAAGGAGACGTTTGTAGCCACAGACCGGTTGCACTGGATGATTGGTGGCGCTGAATGGTTGGCAGGAAGTTTTCTCCAGCACGGCAAGATTGTCACAATCTACATCACTGCTATCGGTACTGCAGGTATAACACTCCAAGCCGTATGCGAGCGGGAAGCACAGCAGTGTGGTAGCAGCAGCTAGCAGGATCGTACACGGCGATGGTAAGACGATCTTCATCTCGTTCAATTGCAATAGTGATGCGTTCCTTGAAAGcgg ] [-] EMBL BM621260 [ TCATCCTCTTCGCACTCCTCGCAGGCGGACATTCGAAACGCGGAGCTGAACGCCTCATTACCCTGCCGGGACAGTAGTGCACACTCGCCACTAACGGCACAGTCACGCCAGATACGTTGCGGCGCTTCGCTGGCAGTTGGAAGGAGACGTTTGTAGCCACAGACCGGTTGCACTGGATGAGTGGAGGCGCTGAATGGTTGGCAGGGAGTTTTCTCCAGCACGGCAAGATTGTCACAATCTAGATCACTGCTATCGGTACTGCAGGTATAACACTCCAAGCCGTATGCGAGTGGGAAGCACAGCAGTGTGGTAGCAGCAGCTAGCAGGATCGTACACGGCGAAGCTAAGACGATCCTCATCTTGTTCAATTGCAATAGTGGTGCGTTCCTTGAAAGTCCTACCG TTCGATTGACCAGCCACGATGTGAAGGTTTCCTCTAAATGTGCTACTGATTCGACCGGACGCGTGGGTC] [-] EMBL BM627735 [ CCTCTTCGCACTCCTCGCAGGCGGACATGCGAAACGCGGAGCTGAACGCCTCATTACCCTGCCGGGACAGTAGTGCACACTCGCCACTGACGGCGCAGCCACGCCAGATACGTTGCGACGCTTCGCTGGCAGTTGGAAGGAGACGTTTGTAGCCACAGACCGGTTGCACTGGATGATTGGTGGCGCTGAATGGTTGGCAGGAAGTTTTCTCCAGCACGGCAAGATTGTCACAATCTACATCACTGCTATCGGTACTGCAGGTATAACACTCCAAGCCGTATGCGAGCGGGAAGCACAGCAGTGTGGTAGCAGCAGCTAGCAGGATCGTACACGGCGATGGTAAGACGATCTTCATCTCGTTCAATTGCAATAGTGATGCGTTCCTTGAAAGTCCcgg ] [+] EMBL BX613292 [ ACGCCAGAAACGTTGCGGCGCTTCGCTGGCAGTTGGAAGGAGACGTTTGTAGCCACAGACCGGTTGCACTGGATGATTGGTGGCGCTGAATGGTTGGCAGGAAGTTTTCTCC ] consensusID : consensus_8187#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [TTTTTTTCTAAGACAGCCTATCAATTTTTATTCACTGTTCATACCCACCGCTTCGTTGATATCAGTTTTACCGCAATTAACAGACCCACGGTCCACCAGGCGGTTTGGGACCTTGTGGCGCCACTTTTTGGTCCATTGCAATCATCCTCTTCGCACTCCTCGCAGGCGGACATGCGAAACGCGGACTGAACGCCTCATTGCCCTGCCGGGACAGTAGGGCACACTCGCCACTAACGGCACAGCCACGCCAGAAACGTTGCGATGCTTCGCTGGCGGTTGGAAGGAGACGTTTGTAGCCACAGACCGGTTGCACTGGATGATTGGTGGCGCTGAATGGTTGGCAGGAAGTTTTCTCCAGCGCACAAGATTGTCACAGTCTAGATCACTGCTATCGGTACTGCAGGTATAACACTCCAAGCCGTATGCGAGTGGGAAGCACATCAGTGTGGTAGCAGCAGCCTAGCAGGATCGTACACGGCGACTAAGACGATCCCCATCTCGTTCAATTGCAATAGTGGTGCGTTCCTTGAAAGTCCTACCGTTCGATTCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCT] [+] EMBL CNS08OLS [TTTTTTTCTAAGACAGCCTATCAATTTTTATTCACTGTTCATACCCACCGCTTCGTTGATATCAGTTTTACCGCAATTAACAGACCCACGGTCCACCAGGCGGTTTGGGACCTTGTGGCGCCACTTTTTGGTCCATTGCAATCATCCTCTTCGCACTCCTCGCAGGCGGACATGCGAAACGCGGACTGAACGCCTCATTGCCCTGCCGGGACAGTAGGGCACACTCGCCACTAACGGCACAGCCACGCCAGAAACGTTGCGATGCTTCGCTGGCGGTTGGAAGGAGACGTTTGTAGCCACAGACCGGTTGCACTGGATGATTGGTGGCGCTGAATGGTTGGCAGGAAGTTTTCTCCAGCGCACAAGATTGTCACAGTCTAGATCACTGCTATCGGTACTGCAGGTATAACACTCCAAGCCGTATGCGAGTGGGAAGCACATCAGTGTGGTAGCAGCAGCCTAGCAGGATCGTACACGGCGACTAAGACGATCCCCATCTCGTTCAATTGCAATAGTGGTGCGTTCCTTGAAAGTCCTACCGTTCGATTCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCT] consensusID : consensus_8187#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [CAGCAAGGGGGAGGCACGGGGCATACCCACCGCTTCGTTGATATCAGTTTTACCGCAATTAACAGACCCACGGTCCACCAGGCGGTTTGGGACCTTGTGGCGCCACTTTTTGGTCCATTGCAATCATCCTCTTCGCACTCCTCGCAGGCGGACATGCGAAACGCGGACTGAACGCCTCATTGCCCTGCCGGGACAGTAGGGCACACTCGCCACTAACGGCACAGCCACGCCAGAAACGTTGCGATGCTTCGCTGGCGGTTGGAAGGAGACGTTTGTAGCCACAGACCGGTTGCACTGGATGATTGGTGGCGCTGAATGGTTGGCAGGAAGTTTTCTCCAGCGCACAAGATTGTCACAGTCTAGATCACTGCTATCGGTACTGCAGGTATAACACTCCAAGCCGTATGCGAGTGGGAAGCACATCAGTTTGGTAGCAGCAGCTAGCAGGATCGTACACGGCGAACTAAGACGATCCCCATCTCGTTCAATTGCAATAGTGGTGCGTTCCTTGAAAGTCCTACCGTTCGATTCCAGTTGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTTAGACAAA] [+] EMBL CNS08OO8 [CAGCAAGGGGGAGGCACGGGGCATACCCACCGCTTCGTTGATATCAGTTTTACCGCAATTAACAGACCCACGGTCCACCAGGCGGTTTGGGACCTTGTGGCGCCACTTTTTGGTCCATTGCAATCATCCTCTTCGCACTCCTCGCAGGCGGACATGCGAAACGCGGACTGAACGCCTCATTGCCCTGCCGGGACAGTAGGGCACACTCGCCACTAACGGCACAGCCACGCCAGAAACGTTGCGATGCTTCGCTGGCGGTTGGAAGGAGACGTTTGTAGCCACAGACCGGTTGCACTGGATGATTGGTGGCGCTGAATGGTTGGCAGGAAGTTTTCTCCAGCGCACAAGATTGTCACAGTCTAGATCACTGCTATCGGTACTGCAGGTATAACACTCCAAGCCGTATGCGAGTGGGAAGCACATCAGTTTGGTAGCAGCAGCTAGCAGGATCGTACACGGCGAACTAAGACGATCCCCATCTCGTTCAATTGCAATAGTGGTGCGTTCCTTGAAAGTCCTACCGTTCGATTCCAGTTGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTTAGACAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8187#2 ------------------------------------------------------------ consensus_8187#3 ------------------------------------------------------------ consensus_8187#1 ------------------------------------------------------------ consensus_8187#0 GCAGATTCCCCGCAGTTATTNCTAAGTTACATGAACCGACAATTTCGATTACATCTTGCA 60 consensus_8187#2 --------------------------------------------------TTTTTTTCTA 10 consensus_8187#3 ------------------------------------------------------------ consensus_8187#1 ------------TTTGCCCACAGCTCGGGCACATGTGGCCTTTTTATTTTTTTTTTTCTA 48 consensus_8187#0 CCAACTCGCCGATGCTGTCGGATGTCGGACCGGAGGACATTTAAAAGATGAATTCTTCTA 120 consensus_8187#2 AGACAGCCTATCA-ATTTTTATTCACTGTTCATACCCACCGCTTCGTTGATATCAG-TTT 68 consensus_8187#3 --------CAGCA-AGGGGGAGGCACGGGGCATACCCACCGCTTCGTTGATATCAG-TTT 50 consensus_8187#1 AGACAGCGCTTCA-ATTTTTATTCACTGTTCATACCCACCGCTTCGTTGATATCAG-TTT 106 consensus_8187#0 AGACAGCGCTTCATATTATTATTCACTGTTCATACCCACCCCTTCGTTGATATCAGCTTT 180 ** * * *** * ********** *************** *** consensus_8187#2 TACCGCAATTAACAGACCCACGGTCCACCAGGCGGTTTGGGACCTTGTGGCGCCACTTT- 127 consensus_8187#3 TACCGCAATTAACAGACCCACGGTCCACCAGGCGGTTTGGGACCTTGTGGCGCCACTTT- 109 consensus_8187#1 TACCGCAATTAACAGACCCACGGTCCACCAGGCGGTTTGGGACCTTGTGGCGCCACTTT- 165 consensus_8187#0 TACCGCAATTAACAGACCCA-GGTCCAACAGGCGGTTTGGGACCTTGTGGCGCCACTTTA 239 ******************** ****** ******************************* consensus_8187#2 TTGGTCCATTGCAATCAT-CCTCTTCGCACTCCTCGCAGGCGGACATGCGAAACGCGGA- 185 consensus_8187#3 TTGGTCCATTGCAATCAT-CCTCTTCGCACTCCTCGCAGGCGGACATGCGAAACGCGGA- 167 consensus_8187#1 TTGGTCCATTGCAATCAT-CCTCTTCGCACTCCTCGCAGGCGGACATGCGAAACGCGGAG 224 consensus_8187#0 TTGGTCCATTGCAATCATACCTCTTCGCACTCCTCGCAGGCGGACATGCGAAACGCGGAG 299 ****************** **************************************** consensus_8187#2 CTGAACGCCTCATTGCCCTGCCGGGAC--AGTAGGGCACACTCGCCACTAAC-GGCACAG 242 consensus_8187#3 CTGAACGCCTCATTGCCCTGCCGGGAC--AGTAGGGCACACTCGCCACTAAC-GGCACAG 224 consensus_8187#1 CTGAACGCCTCATTACCCTGCCGGGAC--AGTAGTGCACACTCGCCACTAAC-GGCACAG 281 consensus_8187#0 CTGAACGCCTCATTACCCTGCCGGGACCAGGTAGTGCACACTCGCCACTAACCGGCACAG 359 ************** ************ **** ***************** ******* consensus_8187#2 CCACGCCAGAAACGT-TGC-GATGCTTCG-CTG-GCGGTTGGAAGGAGACGTTTGTAGC- 297 consensus_8187#3 CCACGCCAGAAACGT-TGC-GATGCTTCG-CTG-GCGGTTGGAAGGAGACGTTTGTAGC- 279 consensus_8187#1 CCACGCCAGATACGT-TGC-GACGCTTCG-CTG-GCAGTTGGAAGGAGACGTTTGTAGC- 336 consensus_8187#0 CCACGCCAGATACGTATGCCGGCGCTNCGACTGAGCAGCTTGC-GCACACGCGCACGACG 418 ********** **** *** * *** ** *** ** * * * * * *** * consensus_8187#2 CACAGACCGGTTGCACTGGATGATTGGTGGCGCTGAATGGTTGGCAGGAAGTTTTCTCCA 357 consensus_8187#3 CACAGACCGGTTGCACTGGATGATTGGTGGCGCTGAATGGTTGGCAGGAAGTTTTCTCCA 339 consensus_8187#1 CACAGACCGGTTGCACTGGATGATTGGTGGCGCTGAATGGTTGGCAGGAAGTTTTCTCCA 396 consensus_8187#0 TACANCGTAAGCCCACAGAACCGGAGATATGGCAACTGCGCAANTGACTACTGCGCTTGG 478 *** *** * * * * ** * * * ** consensus_8187#2 GCGCA-CAAGATTGTCACAGTCTAGATCACTGCTATCGGTACTGCAGGTATAACACTCCA 416 consensus_8187#3 GCGCA-CAAGATTGTCACAGTCTAGATCACTGCTATCGGTACTGCAGGTATAACACTCCA 398 consensus_8187#1 GCACGGCAAGATTGTCACAATCTAGATCACTGCTATCGGTACTGCAGGTATAACACTCCA 456 consensus_8187#0 GCCCGCCC--ACTGGCACACTTGGGGNCTC-GCGACCC-CACACGGGACAAAACGGCNCC 534 ** * * * ** **** * * * * ** * * ** * * *** * consensus_8187#2 AGC-CGTATGCGAGTGGGAAGCACATCAGTGTGGTAGCAGCAGCCTAGCAGGATCGTACA 475 consensus_8187#3 AGC-CGTATGCGAGTGGGAAGCACATCAGTTTGGTAGCAGCAGC-TAGCAGGATCGTACA 456 consensus_8187#1 AGC-CGTATGCGAGTGGGAAGCACAGCAGTGTGGTAGCAGCAGC-TAGCAGGATCGTACA 514 consensus_8187#0 AGCACCCATACCACCAAGGACCACAAACCNGCGGCCACACACGC--ANCCCCGGCANACC 592 *** * ** * * * * **** ** ** ** * * * ** consensus_8187#2 CGGCGA--CTAAGACGATCCCCATCTCGTTCAATTGCAATAGTGGTGCGTTCCTTGAAAG 533 consensus_8187#3 CGGCGAA-CTAAGACGATCCCCATCTCGTTCAATTGCAATAGTGGTGCGTTCCTTGAAAG 515 consensus_8187#1 CGGCGAAGCTAAGACGATCCTCATCTCGTTCAATTGCAATAGTGGTGCGTTCCTTGAAAG 574 consensus_8187#0 CAACCA---CAGAGCNA--CCGACTAACNCCAAATNCAA----GCCATGGCCCCTAACAC 643 * * * * * * * * *** * *** * * ** * * * consensus_8187#2 TCCTACCGTT-CGATTCCAGTAG----GCCAACAGTGC-TCGAGGAATTCCGCAGCT--- 584 consensus_8187#3 TCCTACCGTT-CGATTCCAGTTG----GCCAACAGTTC-TCGAGGAATTCCGCAGCTTTT 569 consensus_8187#1 TCCTACTGTTTCGATTCCAGTCACGATGTGAAGGTTTCCTCTAAATGTGCTACTGATTCG 634 consensus_8187#0 TCCGGCGGCAAACCNCNTGGACAAGAGACGCACATAAC--TTAGAACCCAAACCG----- 696 *** * * * * * * * * consensus_8187#2 ---------------- consensus_8187#3 AGACAAA--------- 576 consensus_8187#1 ACCGGACGCGTGGGTC 650 consensus_8187#0 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||