These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8199#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1179 fasta sequence [GCATCCACCACGCCCGGTGTGTCCGGAATCAGTACGCTAAGCGGGAAGGCGCCCACCCCGCTGCGGCCGCGCATCAAACGTGTCAATCTGCGTGATATGCTGTTCTATCTGGAGCAGGAGAGGGAAACGGGCAAAAGTCAGATGCTTTACAAAGCCTACCTCAAGTGATCGATCGTGCTGCTGTCGCCGGTGGAGGCTAGGGAACGGATCAGGATGATGATGATGCTGCTGATGGTGCTGTTGATCGAGTTCCTCCAGCGCAGGACTCTACCACACCTGCACACTTGTTTCCACACCGATGGCGGCTTTTGTTACACAAACGTGTCTGAATGTGTGTATTTTAAGGGCAACGGCAGTGTGGCAGGAGCGTGTAAAGTCTCCGAATAGCAGCTGCAAGGAATTGTTGGATTCATCTGACAAAAATGTAGATTTTTTTCTCTTGCATCCATCAACAAAATCCCAACGAGAGACGATTGTGGAAAGCGGAGGGTAGACAAAAGGAAGAGCTAGAGCGAGTGAAAGATAGTACACACATATGTGGTTCCGATCGTGAATATCGATCGATCCAAACACCAAGCAGAGCGAAGAGCGAGGGACAGATTCATCTTGCATGTCTACTTGTCCTGTCGTGCATCAACCAGCTAGCAGCTAGGGGAAGAGAGGCGGGTTAGGATGCGAACTGATTTTCTATGTTATAAACGATAGATTCCTAACCCTTCCTTGTTTCGGAGGAGAGCGTCTTTAGCCAGTCCAGAGGGTCGTAAATTCAGCGCGCCAAGGAAAGGATTTTCTAATTAGAAATCCCCTGTCACTTCCGCAAAAGGGAATTAATTTTAGAAGAAAATGAAGTTCATAGTTCATTTTACAGTGGCGCCTTGTGGTTGCAAAGAGGGAGAGAGAGAGAGAGCGAGGTAACGTGTTGGAAAGCAAGCTCTATGGTGTGTGGGTGTGTACAGCAGGCAAAATGGATTTATAATTTCCCTGCAGCAGGAAAAAGGGGGATGGTCTGTCGCTTCAGGCAAAAGCCGATTGCAAACCGCAGCCGATGGCTAACTGTGGCCGGCTAAAAAGTTTCTGAATTAAAACGGTCCAACGCTGTGTATGTGCGTGGGCGTGTGCAAGCGCGCGTGTACGATTTTGTTGTGATGGTCATATGTCAGCTCGCAGATAATCCGCAGC] [+] EMBL BX609869 [GCATCCACCACGCCCGGTGTGTCCGGAATCAGTACGCTAAGCGGGAAGGCGCCCACCCCGCTGCGGCCGCGCATCAAACGTGTCAATCTGCGTGATATGCTGTTCTATCTGGAGCAGGAGAGGGAAACGGGCAAAAGTCAGATGCTTTACAAAGCCTACCTCAAGTGATCGATCGTGCTGCTGTCGCCGGTGGAGGCTAGGGAACGGATCAGGATGATGATGATGCTGCTGATGGTGCTGTTGATCGAGTTCCTCCAGCGCAGGACTCTACCACACCTGCACACTTGTTTCCACACCGATGGCGGCTTTTGTTACACAAACGTGTCTGAATGTGTGTATTTTAAGGGCAACGGCAGTGTGGCAGGAGCGTGTAAAGTCTCCGAATAGCAGCTGCAAGGAATTGTTGGA ] [+] EMBL BX601779 [ TGCTGTTCTATCTGGAGCAGGAGAGGGAAACGGGCAAAAGTCAGATGCTTTACAAAGCCTACCTCAAGTGATCGATCGTGCTGCTGTCGCCGGTGGAGGCTAGGGAACGGATCAGGATGATGATGATGCTGCTGATGGTGCTGTTGATCGAGTTCCTCCAGCGCAGGACTCTACCACACCTGCACACTTGTTTCCACACCGATGGCGGCTTTTGTTACACAAACGTGTCTGAATGTGTGTATTTTAAGGTCAACGGCAGTGTGGCAGGAGCGTGTAAAGTCTCCGAATAGCAGCTGCAAGGAATTGTTGGATTCATCTGACAAAAATGTAGATTTTTTTCTCTTGCATCCATCAACAAAATCCCAACGAGAGACGATTGTGAAAAGCGGAGGGTAGACAAAAGGAAGAGCTAGAGCGAGTGAAAGATAGTACACACATATGTGGTTCCGATCGTGAATATCGATCGATCCAAACACCAAGCAGAGCGAAGAGCGAGGGACAGATTCATCTTGCATGTCTACTTGTCCTGTCGTGCATTAACCAGCTAGCAGCTAGGGGAAGAGAGGCGGGTTATGATGCGAACTGATTTTCTATGTTATAAAC ] [+] EMBL BX627657 [ TTTTTTTCTCTTGCATCCATCAACAAAATCCCAACGAGAGACGATTGTGGAAAGCGGAGGGTAGACAAAAGGAAGAGCTAGAGCGAGTGAAAGATAGTACACACATATGTGGTTCCGATCGTGAATATCGATCGATCCAAACACCAAGCAGAGCGAAGAGCGAGGGACAGATTCATCTTGCATGTCTACTTGTCCTGTCGTGCATCAACCAGCTAGCAGCTAGGGGAAGAGAGGCGGGTTAGGATGCGAACTGATTTTCTATGTTATAAACGATAGATTCCTAACCCTTCCTTGTTTCGGAGGAGAGCGTCTTTAGCCAGTCCAGAGGGTCGTAAATTCAGCGCGCCAAGGAAAGGATTTTCTAATTAGAAATCCCCTGTCACTTCCGCAAAAGGGAATTAATTTTAGAAGAAAATGAAGTTCATAGTTCATTTTACAGTGGCGCCTTGTGGTTGCAAAGAGGGAGAGAGAGAGAGAGCGAGGTAACGTGTTGGAAAGCAAGCTCTATGGTGTGTGGGTGTGTACAGCAGGCAAAATGGATTTATAATTTCCCTGCAGCAGGAAAAAGGGGGATGGTCTGTCGCTTCAGGCAAAAGCCGATTGCAAACCGCAGCCGATGGCTAACTGTGGCCGGCTAAAAAGTTTCT ] [+] EMBL BX626733 [ gatTTTTTTTCTCTTGCATCCATCAACAAAATCCCAACGAGAGACGATTGTGGAAAGCGGAGGGTAGACAAAAGGAAGAGCTAGAGCGAGTGAAAGATAGTACACACATATGTGGTTCCGATCGTGAATATCGATCGATCCAAACACCAAGCAGAGCGAAGAGCGAGGGACAGATTCATCTTGCATGTCTACTTGTCCTGTCGTGCATCAACCAGCTAGCAGCTAGGGGAAGAGAGGCGGGTTAGGATGCGAACTGATTTTCTATGTTATAAACGATAGATTCCTAACCCTTCCTTGTTTCGGAGGAGAGCGTCTTTAGCCAGTCCAGAGGGTCGTAAATTCAGCGCGCCAAGGAAAGGATTTTCTAATTAGAAATCCCCTGTCACTTCCGCAAAAGGGAATTAATTTTAGAAGAAAATGAAGTTCATAGTTCATTTTACAGTGGCGCCTTGTGGTTGCAAAGAGGGAGAGAGAGAGAGAGCGAGGTAACGTGTTGGAAAGCAAGCTCTATGGTGTGTGGGTGTGTACAGCAGGCAAAATGGATTTATAATTT ] [-] EMBL CNS096M0 [ GAAAAAGGGGTATGGTCTGTCGCTTCAGGCAAAAGCCGATTGCAAACCGCAGCCGATGGCTAACTGTGGCCGGCTAAAAAGTTTCTGAATTAAAACGGTCCAACGCTGTGTATGTGCGTGGGCGTGTGCAAGCGCGCGTGTACGATTTTGTTGTGATGGTCATATGTCAGCTCGCAGATAATCCGCAGC] consensusID : consensus_8199#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 691 fasta sequence [CCGCCGAAACGCAAGTGCTCTGATGCTGTCGAATCGCGCTCGTAGCTAAATTCATCGATTCCACAGGAAAAGCAGTGTGCGTTTTTTTGTTTAGTGTCATATGTTATTTTCACCTCGTGTTGTAAGTGTGTGTGTAATTTATAAATCGTATCTGTTGTGTGTT--TGTGTGTGTGTGTCCGGCGTGGTGTGTATCGCACAGTGTGGTCAGTATTTCTTTTTTGTTTTGTTACTTGTGGATTAAGGTGTGTTGTGGCGTGTCTGTCGGTCCCCTGTGTCCTGTGTGCCCC--TGTGTGTGTCTCTTTGTGTTTGTGTGGAAAAAGAAGTGCTCGATACGCGCGCGTACAAGCGAAATACTAAATGCACAATATAGATAATAGTGCACCTTGAATTTGCGTGAAAATCGTGCAAGATTCGTATGCTGCAAAAGTGCCTGCGCGTGTGAGAACGCCTACGGGAGGAAAGTGACCAAATCATGAACGGACCACCGCTGCAGGATGGCTAGATCATAGGCGCGCAGAGGCAGCTGTTGCAACGCGGGGCTGCTGCGGCACAACGCAACGCGCATAGCGACACTACCAACGGAACTGTTCCAGGCGGAAAAGTGTAATCCAACGGTATCGGTCCGCCGTTCGTTGGCGTCTGCCATCTCATCCGGGAACCCCCACCCAGCTGCCTCTTGCCTCATCCTCAG] [+] EMBL BM575280 [CCGCCGAAACGCAAGTGCTCTGATGCTGTCGAATCGCGCTCGTAGCTAAATTCATCGATTCCACAGGAAAAGCAGTGTGCGTTTTTTTGTTTAGTGTCATATGTTATTTTCACCTCGTGTTGTAAGTGTGTGTGTAATTTATAAATCGTATCTGTTGTGTGTT TGTGTGTGTGTGTCCGGCGTGGTGTGTATCGCACAGTGTGGTCAGTATTTCTTTTTTGTTTTGTTACTTGTGGATTAAGGTGTGTTGTGGCGTGTCTGTCGGTCCCCTGTGTCCTGTGTGCCCC TGTGTGTGTCTCTTTGTGTTTGTGTGGAAAAAGAAGTGCTCGATACGCGCGCGTACAAGCGAAATACTAAATGCACAATATAGATAATAGTGCACCTTGAATTTGCGTGAAAATCGTGCAAGATTCGTATGCTGCAAAAGTGCCTGCGCGTGTGAGAACGCCTACGGGAGGAAAGTGACCAAATCATGAACGGACCACCGCTGCAGGATGGCTAGATCATAGGCGCGCAGAGGCAGCTGTTGCAACGCGGGGCTGCTGCGGCACAACGCAACGCGCATAGCGACACTACCAACGGAACTGTTCCAGGCGGAAAAGTGTAATCCAACGGTATCGGTCCGCCGTTCGTTGGCGTCTGCCATCTCATCCGGG ] [+] EMBL BM628090 [CCGCCGAAACGCAAGTGCTCTGATGCTGTCGAATCGCGCTCGTAGCTAAATTCATCGATTCCACAGGAAA AGTGTGCG TTTTTTGTTTAGTGTCATATGTTATTTTCACCTCGTGTTGTAAGTGTGTGTGTAATTTATAAATCGTATCTGTTGTGTGTTTGTGTGTGTGTGTGTCCGGCGTGGTGTGTAGCGCACAGTGTGGTCAGTATTTCTTTTTTGTTTTGTTACTTGTGGATTAAGGTGTGTTGTGGCGTGTCTGTCGGTCCCCTGTGTCCTGTGTGCCCCTGTGTGTGTGTCTCTTTGTGTTTGTGTGAAAAAAGAAGTGCTCGATACGCGCGCGTACAAGCGAAATACTAAATGCACAATATAGATAATAGTGCACCTTGAATTTGCGTGAAAATCGTGCAAGATTCGTATGCTG ] [+] EMBL AGA284807 [ AATGCACAATATAGATAACACTGCACCTTGAATTTGCGTGAAAATCGTGCAAGATTCGTATGCTGCAAAAGTGCCTGCGCGTGTGAGAACGCCTACGGGAGGAAAGTGATCAAATCAGGAACGGACCACCGCTGCAGGATGGCTAGATCATAGGCGCGCAGAGGCAGCTGTTGCAACGCGGGGCTGCTGCGGCACAACGCAACGCGCATAGCGACACTACCAACGGAACTGTTCCAGGTGGAAAAGTGTAATCCAACGGTATCGGTCCGCCGTTCGTTGGCTTCTGCCATCTCATCCGGGAACCCCCACCCAGCTGCCTCTTGCCTCATCCTCAG] consensusID : consensus_8199#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [AAAGCAGTGTGCGTTTTTTGTTTAGTGTCATATGTTATTTTCACCTCGTGTTGTAAGTGTGTGTGTAATTTATAAATCGTATCTGTTGTGTGTTTGTGTGTGTGTGTGTCCGGCGTGGTGTGTAGCGCACAGTGTGGTCAGTATTTCTTTTTTGTTTTGTTACTTGTGGATTAAGGTGTGTTGTGGCGTGTCTGTCGGTCCCCTGTGTCCTGTGTGCCCCTGTGTGTGTGTATTTTAAGGGGGCAACGGCAGTGTGGCAGGAGCGTGTATTGTCTCCGAATAGCAGCTGCAAGGAA] [+] EMBL CNS096LZ [AAAGCAGTGTGCGTTTTTTGTTTAGTGTCATATGTTATTTTCACCTCGTGTTGTAAGTGTGTGTGTAATTTATAAATCGTATCTGTTGTGTGTTTGTGTGTGTGTGTGTCCGGCGTGGTGTGTAGCGCACAGTGTGGTCAGTATTTCTTTTTTGTTTTGTTACTTGTGGATTAAGGTGTGTTGTGGCGTGTCTGTCGGTCCCCTGTGTCCTGTGTGCCCCTGTGTGTGTGTATTTTAAGGGGGCAACGGCAGTGTGGCAGGAGCGTGTATTGTCTCCGAATAGCAGCTGCAAGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8199#1 -CCGCCGAAACGCAAGTGCTCTGATGCTGTCGAATCGCGCTCGTAGCTAAATTCATCGAT 59 consensus_8199#2 ------------------------------------------------------------ consensus_8199#0 GCATCCACCACGCCCGGTGTGTCCGGAATCAGTACGCTAAGCGGGAAGGCGCCCACCCCG 60 consensus_8199#1 TCCACAGGAAAAGCAGTGTGCGTTTTTTTGTTTAGTGTCATATGTTATTTTCACCTCGTG 119 consensus_8199#2 ---------AAAGCAGTGTGCGTTTTTT-GTTTAGTGTCATATGTTATTTTCACCTCGTG 50 consensus_8199#0 CTGCGGCCGCGCATCAAACGTGTCAATCTGCGTGATATGCTGTTCTATCTGGAGCAGGAG 120 * ** * * * * * * * *** * * * * * consensus_8199#1 TTGTAAGTGTGTGTG-------TAATTTATAAATCGTATCTGTTGTGTGTTTGTGTGTGT 172 consensus_8199#2 TTGTAAGTGTGTGTG-------TAATTTATAAATCGTATCTGTTGTGTGTTTGTGTGTGT 103 consensus_8199#0 AGGGAAACGGGCAAAAGTCAGATGCTTTACAAAGCCTACCTCAAGTGATCGATCGTGCTG 180 * ** * * * **** *** * ** ** *** *** consensus_8199#1 GTG--TCCGGCGTGG--TGTGTATCGCA-CAGTGTGGTCAGTAT-TTCTTTTTTGTTTTG 226 consensus_8199#2 GTGTGTCCGGCGTGG--TGTGTAGCGCA-CAGTGTGGTCAGTAT-TTCTTTTTTGTTTTG 159 consensus_8199#0 CTGTCGCCGGTGGAGGCTAGGGAACGGATCAGGATGATGATGATGCTGCTGATGGTGCTG 240 ** **** * * * * * ** * *** ** * * ** * * * ** ** consensus_8199#1 TTACTTGTGGATT----AAGGTGTGTTGTGGCGTGTCTG-----TCGGTCCCCT------ 271 consensus_8199#2 TTACTTGTGGATT----AAGGTGTGTTGTGGCGTGTCTG-----TCGGTCCCCT------ 204 consensus_8199#0 TTGATCGAGTTCCTCCAGCGCAGGACTCTACCACACCTGCACACTTGTTTCCACACCGAT 300 ** * * * * * * * * *** * * * ** consensus_8199#1 -GTGTCCTGTGTGCCCC---TGTGTGTGTCTCTTTGTGTTTGTGTGGAAAAAGAAGTGCT 327 consensus_8199#2 -GTGTCCTGTGTGCCCC---TGTGTGTGTGTATTT----TAAGGGGGCAACGGCAGTGTG 256 consensus_8199#0 GGCGGCTTTTGTTACACAAACGTGTCTGAATGTGTGTATTTTAAGGGCAACGGCAGTGTG 360 * * * * *** * * **** ** * * * * ** ** * **** consensus_8199#1 CGATACGCGCGCGTACAAGCGAAATACTAAATGCACAATATAGATAATAGTGCACCTTGA 387 consensus_8199#2 GCAGGAGCGTGTATTGTCTCCGAATAGCAGCTGCAAGGAA-------------------- 296 consensus_8199#0 GCAGGAGCGTGTAAAGTCTCCGAATAGCAGCTGCAAGGAATTGTTGGATTCATCTGACAA 420 * *** * * **** * **** * consensus_8199#1 ATTTGCGTGAAAATCGTGCAAGATTCGTATGCTGCAAAAGTGCCTGCGCGTGTGAGAACG 447 consensus_8199#2 ------------------------------------------------------------ consensus_8199#0 AAATGTAGATTTTTTTCTCTTGCATCCATCAACAAAATCCCAACGAGAGACGATTGTGGA 480 consensus_8199#1 CCTACGGGAGGAAAGTGACCAAATCATGAACGGACCACCGCTGCAGGATGGCTAGATCAT 507 consensus_8199#2 ------------------------------------------------------------ consensus_8199#0 AAGCGGAGGGTAGACAAAAGGAAGAGCTAGAGCGAGTGAAAGATAGTACACACATATGTG 540 consensus_8199#1 AGGCGCGCAGAGGCAGCTGTTGCAACGCGGGGCTGCTGCGGCACAACGCAACGCGCATAG 567 consensus_8199#2 ------------------------------------------------------------ consensus_8199#0 GTTCCGATCGTGAATATCGATCGATCCAAACACCAAGCAGAGCGAAGAGCGAGGGACAGA 600 consensus_8199#1 CGACACTACCAACGGAACTGTTCCAGGCGGAAAAGTGTAATCCAACGGTATCGGTCCGCC 627 consensus_8199#2 ------------------------------------------------------------ consensus_8199#0 TTCATCTTGCATGTCTACTTGTCCTGTCGTGCATCAACCAGCTAGCAGCTAGGGGAAGAG 660 consensus_8199#1 GTTCGTTGGCGTCTGCCATCTCATCCGGGAACCCCCACCCAGCTGCCTCTTGCCTCATCC 687 consensus_8199#2 ------------------------------------------------------------ consensus_8199#0 AGGCGGGTTAGGATGCGAACTGATTTTCTATGTTATAAACGATAGATTCCTAACCCTTCC 720 consensus_8199#1 TCAG-------------------------------------------------------- 691 consensus_8199#2 ------------------------------------------------------------ consensus_8199#0 TTGTTTCGGAGGAGAGCGTCTTTAGCCAGTCCAGAGGGTCGTAAATTCAGCGCGCCAAGG 780 consensus_8199#1 ------------------------------------------------------------ consensus_8199#2 ------------------------------------------------------------ consensus_8199#0 AAAGGATTTTCTAATTAGAAATCCCCTGTCACTTCCGCAAAAGGGAATTAATTTTAGAAG 840 consensus_8199#1 ------------------------------------------------------------ consensus_8199#2 ------------------------------------------------------------ consensus_8199#0 AAAATGAAGTTCATAGTTCATTTTACAGTGGCGCCTTGTGGTTGCAAAGAGGGAGAGAGA 900 consensus_8199#1 ------------------------------------------------------------ consensus_8199#2 ------------------------------------------------------------ consensus_8199#0 GAGAGAGCGAGGTAACGTGTTGGAAAGCAAGCTCTATGGTGTGTGGGTGTGTACAGCAGG 960 consensus_8199#1 ------------------------------------------------------------ consensus_8199#2 ------------------------------------------------------------ consensus_8199#0 CAAAATGGATTTATAATTTCCCTGCAGCAGGAAAAAGGGGGATGGTCTGTCGCTTCAGGC 1020 consensus_8199#1 ------------------------------------------------------------ consensus_8199#2 ------------------------------------------------------------ consensus_8199#0 AAAAGCCGATTGCAAACCGCAGCCGATGGCTAACTGTGGCCGGCTAAAAAGTTTCTGAAT 1080 consensus_8199#1 ------------------------------------------------------------ consensus_8199#2 ------------------------------------------------------------ consensus_8199#0 TAAAACGGTCCAACGCTGTGTATGTGCGTGGGCGTGTGCAAGCGCGCGTGTACGATTTTG 1140 consensus_8199#1 --------------------------------------- consensus_8199#2 --------------------------------------- consensus_8199#0 TTGTGATGGTCATATGTCAGCTCGCAGATAATCCGCAGC 1179 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||