These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8216#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1208 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGGGGAAAACATTTGCCGTGGCACACGAACAGCATTTTCTTTCCACA-GACACCTGTTAGAAAGTAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAATACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTAAGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGACCATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGACGCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACATCA-GCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCTGGCCGGCCAGAATGTGCTCGATCCC-ACCCGCCGGTGGACGCCCGGCTTCAA-GCA-GAACGTGTGGAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGTCAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAAGCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCCGGCTGTGCATCGAGTGGGAGCGGGCCGCCACGCTGTCGGACAACTCGATCTGCCGCGTGGTGCGCGTACGAAGCGGCGTCGTGCTTGGACGGGAGGGCGGCATGATCCAGTCGCTGATACTGCCGTTCT-GGTTCGGGCTCGGC-GGCCCGGTCGGCGACGGCAAGCACGATCTGCCCTGGATACACGCGGACGACCTGTGCGGGCTGATACGGTTCGCGATCGA-------GAGGTAAGCGGGGTGCTGAACGGGGTCGCCCCGGAGCTGGCCACCAACGCGGACTTTACCAAAGCGTTCGCGGCCGCCCTGGTCCGGCCCGCCTTCTTTCCCATGCCGCTGTTCGCGNTGAATCTCGTGTTCGCCGCGGAGCGGGCGGTGCTGCTGACGAACGGCGCGAAGGTGGTACCGCAGCGTGTGCTGGAGTACGGGTTCCAGTATCGGTATCCGGACCTGCAGTCCGCCTGCAAGGAGGTGGCACACTTGTTNTAAGCCCAAGCACGATCTCGCCCGCGCAACCCAAACGCAGCTCTAAACGCAGTCT] [+] EMBL BM608616 [CCGCGGACGCGTGGGCGGACGCGTGGGGGGAAAACATTTGCCGTGGCACACGAACAGCATTTTCTTTCCACATGACACCTGTTAGAAAGTAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAATACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTAAGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGACCATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGACGCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACATCA GCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCTGGCCGGCCAGAATGTGCTCGATCCC ACCCGCCGGTGGACGCCCGGCTTCAA GCA GAACGTGTGGAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGTCAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAAGCACACCGAGC ] [+] EMBL BX468925 [ ggcagaatCGG CACGT GGAGGAAAACATTTGCCGTGGCACACGAACAGCATTTTCTTTCCACA GACACCTGTTAGAAAGTAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAATACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTAAGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGACCATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGACGCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACATCAGGCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCTGGCCGGCCAGAATGTGCTCGATCCCGACCCGACGGTGGACGCCCGGCTTCAAGGCAGGAACGT ] [+] EMBL BX606272 [ GAACAGCATTTTCTTTCCACA GACACCTGTTAGAAAGTAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAATACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTAAGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGACCATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGACGCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACATCA GCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCTGGCCGGCCAGAATGTGCTCGATCCC ACCCGCCGGTGGACGCCCGGCTTCAA GCA GAACGTGTGGAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGTCAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAAGCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCCGGCTGTGCATCGAGTGGGAGCGGGCCGCCACGCTGTCGGACAACTCGATCTGCCGCGTGGTGCGCGTACGAAGCGGCGTCGTGCTTGGACGGGAGGGCGGCATG ] [+] EMBL BX614853 [ CACA GACACCTGTTAGAAAGTAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAATACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTAAGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGACCATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGACGCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACATCA GCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCTGGCCGGCCAGAATGTGCTCGATCCC ACCCGCCGGTGGACGCCCGGCTTCAA GCA GAACGTGTGGAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGTCAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAAGCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCCGGCTGTGCATCGAGTGGGAGCGGGCCGCCACGCTGTCGGACAACTCGATCTGCCGCGTGGTGCGCGTACGAAGCGGCGTCGTGCTTGGACGGGAGG ] [+] EMBL BX621119 [ ACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAATACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTAAGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGACCATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGACGCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACATCA GCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCTGGCCGGCCAGAATGTGCTCGATCCC ACCCGCCGGTGGACGCCCGGCTTCAA GCA GAACGTGTGGAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGTCAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAAGCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCCGGCTGTGCATCGAGTGGGAGCGGGCCGCCACGCTGTCGGACAACTCGATCTGCCGCGTGGTGCGCGTACGAAGCGGCGTCGTGCTTGGACGGGAGGGCGGCATGATCCAGTCGCTGATACTGCCGTTCTGGGTTCGGGCTCGGCGGGCCCGGTCGGCGACGGCAAGCACGATCTGCCCTGGATACACGCGGACGACCTGTGCGGGCTG ] [-] EMBL AGA283541 [ GCTCGATCCC ACCCGCCGGTGGACGCCCGGCTTCAA GCA GAACGTGTGAAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGTCAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAAGCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCCGGCTGTGCATCGAGTGGGAGCGGGCCGCCACGCTGTCGGACAACTCGATCTGCCGCGTGGTGCGCGTACGAAGCGGCGTCGTGCTTGGACGGGAGGGCGGCATGATCCAGTCGCTGATACTGCCGTTCT GGTTCGGGCTCGGC GGCCCGGTCGGCGACGGCAAGCACGATCTGCCCTGGATACACGCGGACGACCTGTGCGGGCTGATACGGTTCGCGATCGA GAGGTAAGCGGGGTGCTGAACGGGGTCGCCCCGGAGCTGGCCACCAACGCGGACTTTACC ] [-] EMBL BX627676 [ TCGAGCGCGCCNCGGTCAAGCCGNCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAAGCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCCGGCTGTGCATCGAGTGGGAGCGGGCCGCCACGCTGTCGGACAACTCGATCTGCCGCGNGGTGCGCGTACGAAGCGGCGTCGTGCTTGGACGGGAGGGCGGCATGATCCAGTCGCTGATACTGCCGTTCT GGTTCGGGCTCGGC GGCCCGGTCGGCGACGGCAAGCACGATCTGCCCTGGATACACGCGGACGACCTGTGCGGGCTGATACGGTTCGCGATCGAGCGGCCGGAGGTAAGCGGGGTGCTGAACGGGGTCGCCCCGGAGCTGGCCACCAACGCGGACTTTACCAAAGCGTTCGCGGCCGCCCTGGTCCGGCCCGCCTTCTTTCCCATGCCGCTGTTCGCGNTGAATCTCGTGTTCGCCGCGGAGCGGGCGGTGCTGCTGACGAACGGCGCGAAGGTGGTACCGCAGCGTGTGCTGGAGTACGGGTTCCAGTATCGGTATCCGGACCTGCAGTCCGCCTGCAAGGAGGTGGCACACTTGTTNTAAGCCCAAGCACGATCTCGCCCGCGCAACCCAAACGCAGCTCTAAACGCAGTCT] consensusID : consensus_8216#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 733 fasta sequence [GATCGCCCGAGGTNTTCCCGGCATTTGCGCTCGCAGTTGCAAACTCGTTATGTGACGGTGGGAAAACATTTGCCGTGGCACACGAACAGCATTTTCTTTCCACAGACACCTGTTAGAAAGTAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAATACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTAAGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGACCATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGACGCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACATCAGCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCTGGCCGGCCAGAATGTGCTCGATCCCACCCGCCGGTGGACGCCCGGCTTCAAGCAGAACGTGTGGAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGTCAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAAGCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCCCGGCTGTGCATCGAGTGGGACGGGCCGCA] [+] EMBL AL932559 [GATCGCCCGAGGTNTTCCCGGCATTTGCGCTCGCAGTTGCAAACTCGTTATGTGACGGTGGGAAAACATTTGCCGTGGCACACGAACAGCATTTTCTTTCCACAGACACCTGTTAGAAAGTAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAATACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTAAGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGACCATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGACGCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACATCAGCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCTGGCCGGCCAGAATGTGCTCGATCCCACCCGCCGGTGGACGCCCGGCTTCAAGCAGAACGTGTGGAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGTCAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAAGCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCCCGGCTGTGCATCGAGTGGGACGGGCCGCA] [+] EMBL AGA284831 [ GGAAAACATTTGCCGTGGCACACGAACAGCATTTTCTTTCCACAGACACCTGTTAGAAAGTAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAATACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTAAGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGACCATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGACGCTGCTCGCTGA AGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACATCAGCTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8216#0 ------------------------------CCGCGGACGCGTGGGCGG-ACGCG-TGGGG 28 consensus_8216#1 GATCGCCCGAGGTNTTCCCGGCATTTGCGCTCGCAGTTGCAAACTCGTTATGTGACGGTG 60 *** * ** ** * * * ** * consensus_8216#0 GGAAAACATTTGCCGTGGCACACGAACAGCATTTTCTTTCCACAGACACCTGTTAGAAAG 88 consensus_8216#1 GGAAAACATTTGCCGTGGCACACGAACAGCATTTTCTTTCCACAGACACCTGTTAGAAAG 120 ************************************************************ consensus_8216#0 TAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAA 148 consensus_8216#1 TAGTGGGCGAAAGTACACTAAGAGCCAAGATACAAAAAAACAGTGAGTCCCAGATTGGAA 180 ************************************************************ consensus_8216#0 TACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTA 208 consensus_8216#1 TACACAATCAACGGCCACGAGCAACCACAGCAGTGCGCTGAAAACCTTTTATGGCAATTA 240 ************************************************************ consensus_8216#0 AGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGAC 268 consensus_8216#1 AGTTCAACGCTCGGAAAAGTTCCTTCTGAAGCAGTCAGGATATTCCTGTAAACATACGAC 300 ************************************************************ consensus_8216#0 CATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGAC 328 consensus_8216#1 CATGTCACACGTTGTAATTGGTGGCGGCACCGGCTTCATCGGCCGCCGGCTGGTAAAGAC 360 ************************************************************ consensus_8216#0 GCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACAT 388 consensus_8216#1 GCTGCTCGCTGAAGGTCACGAGGTGACGACGATTTCGCGCATGCCGGGCCCGAAGCACAT 420 ************************************************************ consensus_8216#0 CAGCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCT 448 consensus_8216#1 CAGCTGGCACGAGCTGGAGAAGGAGGGCCTGCCGAGCGGTACGACGGCCGTCGTGAACCT 480 ************************************************************ consensus_8216#0 GGCCGGCCAGAATGTGCTCGATCCCACCCGCCGGTGGACGCCCGGCTTCAAGCAGAACGT 508 consensus_8216#1 GGCCGGCCAGAATGTGCTCGATCCCACCCGCCGGTGGACGCCCGGCTTCAAGCAGAACGT 540 ************************************************************ consensus_8216#0 GTGGAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGT 568 consensus_8216#1 GTGGAACTCGCGCATCAACACGACGGCGGCCTGCGCGCGGGCGATCGAGCGCGCCACGGT 600 ************************************************************ consensus_8216#0 CAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAA 628 consensus_8216#1 CAAGCCGGCCGTGTTCGTCAACATCTCCGGCGTCAGCCACTACGCGCCGGGCAGCCAGAA 660 ************************************************************ consensus_8216#0 GCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCC-GGCTGTGCATCGAGT 687 consensus_8216#1 GCACACCGAGCTGTCCAAGGTGTCCGACTACGACTTCATGTCCCCGGCTGTGCATCGAGT 720 ******************************************** *************** consensus_8216#0 GGGAGCGGGCCGCCACGCTGTCGGACAACTCGATCTGCCGCGTGGTGCGCGTACGAAGCG 747 consensus_8216#1 GGGA-CGGGCCGCA---------------------------------------------- 733 **** ******** consensus_8216#0 GCGTCGTGCTTGGACGGGAGGGCGGCATGATCCAGTCGCTGATACTGCCGTTCTGGTTCG 807 consensus_8216#1 ------------------------------------------------------------ consensus_8216#0 GGCTCGGCGGCCCGGTCGGCGACGGCAAGCACGATCTGCCCTGGATACACGCGGACGACC 867 consensus_8216#1 ------------------------------------------------------------ consensus_8216#0 TGTGCGGGCTGATACGGTTCGCGATCGAGAGGTAAGCGGGGTGCTGAACGGGGTCGCCCC 927 consensus_8216#1 ------------------------------------------------------------ consensus_8216#0 GGAGCTGGCCACCAACGCGGACTTTACCAAAGCGTTCGCGGCCGCCCTGGTCCGGCCCGC 987 consensus_8216#1 ------------------------------------------------------------ consensus_8216#0 CTTCTTTCCCATGCCGCTGTTCGCGNTGAATCTCGTGTTCGCCGCGGAGCGGGCGGTGCT 1047 consensus_8216#1 ------------------------------------------------------------ consensus_8216#0 GCTGACGAACGGCGCGAAGGTGGTACCGCAGCGTGTGCTGGAGTACGGGTTCCAGTATCG 1107 consensus_8216#1 ------------------------------------------------------------ consensus_8216#0 GTATCCGGACCTGCAGTCCGCCTGCAAGGAGGTGGCACACTTGTTNTAAGCCCAAGCACG 1167 consensus_8216#1 ------------------------------------------------------------ consensus_8216#0 ATCTCGCCCGCGCAACCCAAACGCAGCTCTAAACGCAGTCT 1208 consensus_8216#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||