These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8222#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1483 fasta sequence [CGGTGGTCGATGATTTGGATATGGATATGCCGAGCGACATTAGCTCGGAGCAAAAC-ACGA----ACCAGAATGTGGCGAACTTTA-TCAATAGCTACGTCCTCGACACGACCACGAATGCTGCCGGCGAGCTGGAACCGATCCTTCGTCCCGCGTCCCGTTCCCAGTCGGAAGAGAACATCGTGCTCGACATTGGCCGGGAAGCGA-TAAGCGTTCAGAATCTTCAGGAACGCGTCACGACGGCGGCGAGTAACTTTGTGAGCAAGGTGTCAAACACGCTCACCAGCATTACCGCCTCGAAACCGATCGCAGCAGGCGGCTCGCAGAACGAGCTGCAAACCAACCTGGATGCACTGATCGCCCGCAGCCCGTCCGACGAGTTCATCTTTCACGTGCCGAAGGATTCCCACCTGTCGCCGTACTGGGCCTCCGATGAGGTGTTGAGTCAATTTCCCCCGACCAAGATACTGACCGTCGTGCTCGAT-CCCTGTCTGGATGAT-TGTGTGATGTTTGCCAAAAGACTGAAGAGCTTACACCGGTCCG-TTGCGCTTGACATTCTGCCCGGGCTGCCGCATGGA-TTCTTAAACTTTGCAACTATCTCCAAAGAA-GCGCACGATGGTTCGAAG-CTGTGCGTGAA-G-CGTATTGCCGAGCTGCTCGAAATACCGACCACGCTGGACGATCC-GGGCACGAAGCAGGGCTGCTGTTAGCGAAAATGCTGGTAAGGCAGTAGGGCGTCGTCGTCGGCTGCCAGGCATTGCCGCCACTCGACTGAAAACTGTTGTTCCGTAAAGCCAAACCAAAATTTGGAACCAAAACCAAGTAAACAACAGGCTCTAGAGGCTTTTATTTAGCTCAAATGAAACAAACAAGAGGCTCATACTCCTGGTGCATTACCGAACAACTCCAGAAAGTGTCCAGCGACGGAACCGAGTGGACCCAAAGCACGTGCATAGAATGCGCAATACACGCGTCGTCGTTAAACGTCCCTTTTTGTGAAGCAAAAACACAAACCGATTGGCCTTTGATGCTACATCACACCCCCTCCCCCCCATTGTGTGTTTAGTGCGATGCGGCTTTATATTATTACTATTATTGATGCACCTTTTTGCAATCAGCACCAACAAAACCAAAAGAAAAAGAAAAAACACTCAACCAAAACGCTCTGGCGTAGTTAACACGCGAGCATACATATGGTGGGGCGTAATTTATTATCTGCCTTGTCCGTTTTGCGCTTACTGAATCTTACTGGATATATATATATACACAAATATTTCGTAAAGTTGTGTGCATCTATTTGCTGCTTACTCTACGCGTTACCGATATTCAAACTTAGTATGATTAATGTAAGAGCGTCGCGTTAGGAGAAGTTTGGAGAACAAGCGATAATCCACCGAAACCACCGGTGCTTGGGTAGTACGTAAGTCGAGGTAATTTGTGATTATGTTATCCTTTTACTTTTGNTATCCGTGCAACACGGGTGTTTTGTTAC] [+] EMBL BX625663 [CGGTGGTCGATGATTTGGATATGGATATGCCGAGCGACATTAGCTCGGAGCAAAAC ACGA ACCAGAATGTGGCGAACTTTA TCAATAGCTACGTCCTCGACACGACCACGAATGCTGCCGGCGAGCTGGAACCGATCCTTCGTCCCGCGTCCCGTTCCCAGTCGGAAGAGAACATCGTGCTCGACATTGGCCGGGAAGCGA TAAGCGTTCAGAATCTTCAGGAACGCGTCACGACGGCGGCGAGTAACTTTGTGAGCAAGGTGTCAAACACGCTCACCAGCATTACCGCCTCGAAACCGATCGCAGCAGGCGGCTCGCAGAACGAGCTGCAAACCAACCTGGATGCACTGATCGCCCGCAGCCCGTCCGACGAGTTCATCTTTCACGTGCCGAAGGATTCCCACCTGTCGCCGTACTGGGCCTCCGATGAGGTGTTGAGTCAATTTCCCCCGACCAAGATACTGACCGTCGTGCTCGAT CCCTGTCTGGATGAT TGTGTGATGTTTGCCAAAAGACTGAAGAGCTTACACCGGTCCG TTGCGCTTGACATTCTGCCCGGGCTGCCGCATGGA TTCTTAAACTTTGCAACTATCTCCAAAG ] [+] EMBL AL697258 [ GCTC GAGCAGATCGCCGAGGTTAACAGAATGTGGCGAACTTTACTCAATAGCTACGTCCTCGACACGACCACGAATGCTGCCGGCGAGCTGGAACCGATCCTTCGTCCCGCGTCCCGTTCCCAGTCGGAAGAGAACATCGTGCTCGACATTGGCCGGGAAGCGACTAAGCGTTCAGAATCTTCAGGAACGCGTCACGACGGCGGCGAGTAACTTTGTGAGCAAGGTGTCAAACACGCTCACCAGCATTACCG CTCGAAACCGATCGCAGCAGGCGGCTCGCAGAACGAGCTGCAAACCAA CTGGATGCACTGATCGCCCGCAGCCCGTCCGACGAGTTCATCTTTCACGTGCCGAAGGATTCCCA CTGTCGCCGTACTGGGCCTCCGATGAGGTGTTGAGTCAATTTCCCCCGA CAAGATACTGACCGTCGTGCTCGATACCCTGTCTGGATGATATGTGTGATGTTTG CAAAAGACTGAAGAGCTTACACCGGTCCGATTGCGCTTGACATTCTGGCCGGGCTGCCGCATGGACTTCTTAAACTTTGCAANTATCTCCAAAGAAGGCGCACGATGGTTCGAAGCCTGTGCGTGAACGCCGTATTGCCGAGCTGCTCGAAATACCGACCAAGCTGGACGATCCNGGGCACGAAa ] [+] EMBL BX627104 [ CTGGAACCGATCCTTCGTCCCGCGTCCCGTTCCCAGTCGGAAGAGAACATCGTGCTCGACATTGGCCGGGAAGCGA TAAGCGTTCAGAATCTTCAGGAACGCGTCACGACGGCGGCGAGTAACTTTGTGAGCAAGGTGTCAAACACGCTCACCAGCATTACCGCCTCGAAACCGATCGCAGCAGGCGGCTCGCAGAACGAGCTGCAAACCAACCTGGATGCACTGATCGCCCGCAGCCCGTCCGACGAGTTCATCTTTCACGTGCCGAAGGATTCCCACCTGTCGCCGTACTGGGCCTCCGATGAGGTGTTGAGTCAATTTCCCCCGACCAAGATACTGACCGTCGTGCTCGAT CCCTGTCTGGATGAT TGTGTGATGTTTGCCAAAAGACTGAAGAGCTTACACCGGTCCG TTGCGCTTGACATTCTGCCCGGGCTGCCGCATGGA TTCTTAAACTTTGCAACTATCTCCAAAGAA GCGCACGATGGTTCGAAG CTGTGCGTGAA G CGTATTGCCGAGCTGCTCGAAATACCGACCACGCTGGACGATCC GGGCACGAAGCAGGGCTGCTGTTAGCGAAAATGCTGGTAAGGCAGTAGGGCGTCGTCGTCGGCTGCCAGGCATTGCCGCCACTCGACTGAAAACTGTTGTTCCGTAAAGCCAA ] [+] EMBL BX617684 [ GATTCTTCGTCCCGCGTCCCGTTCCCAGTCGGAAGAGAACATCGTGCTCGACATTGGCCGGGAAGCGA TAAGCGTTCAGAATCTTCAGGAACGCGTCACGACGGCTGCGAGTAACTTTGTGAGCAAGGTGTCAAACACGCTCACCAGCATTACCGCCTCGAAACCGATCGCAGCAGGCGGCTCGCAGAACGAGCTGCAAACCAACCTGGATGCACTGATCGCCCGCAGCCCGTCCGACGAGTTCATCTTTCACGTGCCGAAGGATTCCCACCTGTCGCCGTACTGGGCCTCCGATGAGGTGTTGAGTCAATTTCCCCCGACCAAGATACTGACCGTCGTGCTCGAT CCCTGTCTGGATGAT TGTGTGATGTTTGCCAAAAGACTGAAGAGCTTACACCGGTCCG TTGCGCTTGACATTTTGCCCGGGCTGCCGCATGGA TTCTTAAACTTTGCTACTATCTCCAAAGAA GCGCACGATGGTTCGAAG CTGTGCGTGAA G CGTATTGCCGAGCTGCTCGAAATACCGACCACGCTGGACGATCC GGGCACGAAGCAAGGCTGCTGTTAGCGAAAATGCTGGTAAGGCAGTAGGGCGTCGTCGTCGGCTGCCAGGCATTGCCGC ] [+] EMBL BX620642 [ GCAGTAGGGCGTCGTCGTCGGCTGCCAGGCATTGCCGCCACTCGACTGAAAACTGTTGTTCCGTAAAGCCCAACCAAAATTTGGAACCAAAACCAAGTAAACAACAGGCTCTAGAGGCTTTTATTTAGCTCAAATGAAACAAACAAGAGGCTCATACTCCTGGTGCATTACCGAACAACTCCAGAAAGTGTCCAGCGACGGAACCGAGTGGACCCAAAGCACGTGCATAGAATGCGCAATACACGCGTCGTCGTTAAACGTCCCTTTTTGTGAAGCAAAAACACAAACCGATTGGCCTTTGATGCTACATCACACCCCCTCCCCCCCATTGTGTGTTTAGTGCGATGCGGCTTTATATTATTACTATTATTGATGCACCTTTTTGCAATCAGCACCAACAAAACCAAAAGAAAAAGAAAAAACACTCAACCAAAACGCTCTGGCGTAGTTAACACGCGAGCATACATATGGTGGGGCGTAATTTATTATCTGCCTTGTCCGTTTTGCGCTTACTGAATCTTACTGGATATATATATATACACAAATATTTCGTAAAGTTGTGTGCATCTATTTGCTGCTTACTCTACGCGTTACCGATATTCAAACTTAGTATGATTAATGTAAGAGCGTCGCGTTAGGAGAAGTTTGGAGAACAAGCGATAATCCACCGAAACCACCGGTGCTTGGGT ] [+] EMBL BX628517 [ TTTAGCTCAAATGAAACAAACAAGAGGCTCATACTCCTGGTGCATTACCGAACAACTCCAGAAAGTGTCCAGCGACGGAACCGAGTGGACCCAAAGCACGTGCATAGAATGCGCAATACACGCGTCGTCGTTAAACGTCCCTTTTTGTGAAGCAAAAACACAAACCGATTGGCCTTTGATGCTACATCACACCCCCTCCCCCCCATTGTGTGTTTAGTGCGATGCGGCTTTATATTATTACTATTATTGATGCACCTTTTTGCAATCAGCACCAACAAAACCAAAAGAAAAAGAAAAAACACTCAACCAAAACGCTCTGGCGTAGTTAACACGCGAGCATACATATGGTGGGGCGTAATTTATTATCTGCCTTGTCCGTTTTGCGCTTACTGAATCTTACTGGATATATATATATACACAAATATTTCGTAAAGTTGTGTGCATCTATTTGCTGCTTACTCTACGCGTTACCGATATTCAAACTTAGTATGATTAATGTAAGAGCGTCGCGTTAGGAGAAGTTTGGAGAACAAGCGATAATCCACCGAAACCACCGGTGCTTGGGTAGTACGTAAGTCGAGGTAATTTGTGATTATGTTATCCTTTTACTTTTGNTATCCGTGCAACACGGGTGTTTTGTTA ] [+] EMBL AGA283189 [ ATGGTGGGGCGTAATTTATTATCTGCCTTGTCCGTTTTGCGCTTACTGAATCTTACTGGATATATATATATACACAAATATTTCGTAAAGTTGTGTGCATCTATTTGCTGCTTACTCTACGCGTTACCGATATTCAAACTTAGTATGATTAATGTAAGAGCGTCGCGTTAGGAGAAGTTTGGAGAACAAGCGATAATCCACCGAAACCACCGGTGCTTGGGTAGTACGTAAGTCGAGGTAATTTGTGATTATGTTATCCTTTTACTTTTGTTATCCGTGCAACACGGTTGTTTTGTTAC] consensusID : consensus_8222#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 650 fasta sequence [CCGCCCACGCGTCCGGTGGACCCAAAGCACGTGCATAGAATGCGCAATACACGCGTCGTCGTTAAACGTCCCTTTTTGTGAAGCAAAAAACAAACCGATTGGCCTTTGATGCTACATCACACCCCCTCCCCCCCATTGTGTGTTTAGTGCGATGCGGCTTTATATTATTACTATTATTGATGCACCTTTTTGCAATCAGTACCAACAAAACCAAAAGAAAAGGAAAAAATACTCAACCAAAACGCTCTGGCGTAGTGAACACGCGAGCATACTATGCATGGTGGGGCGTAATTTATTATCTGCCTTGTCCGTTTTGCGCTTACTGAATCTTACTGGATATATATACAAATATTTCGTAAAGTTGTGTGCATCTATTTGCTGCTTGCTCTACGCGTTACCGATATTCAAACTTAGTATGATTAATGTAAGAGTTGGAGAACAAGCGATAATCCACCGAAACCTGCCGGTGCTTGGGTAGTACGTAAGTCGAGGTAATTTGTGATTATGTTTTACTTTTGGTATCCGTGCAACACGGGTGTTTTGTTACAACAGAGTCTCGCTTTGTTGTGCCCCCTTTAC-AATACTATAATACTCCAACTGAATTGTGAACAAACAAGCAAACAATTGTCTCATTGTGGCTAGTGCAAGGA] [+] EMBL BM585784 [CCGCCCACGCGTCCGGTGGACCCAAAGCACGTGCATAGAATGCGCAATACACGCGTCGTCGTTAAACGTCCCTTTTTGTGAAGCAAAAAACAAACCGATTGGCCTTTGATGCTACATCACACCCCCTCCCCCCCATTGTGTGTTTAGTGCGATGCGGCTTTATATTATTACTATTATTGATGCACCTTTTTGCAATCAGTACCAACAAAACCAAAAGAAAAGGAAAAAATACTCAACCAAAACGCTCTGGCGTAGTGAACACGCGAGCATACTATGCATGGTGGGGCGTAATTTATTATCTGCCTTGTCCGTTTTGCGCTTACTGAATCTTACTGGATATATATACAAATATTTCGTAAAGTTGTGTGCATCTATTTGCTGCTTGCTCTACGCGTTACCGATATTCAAACTTAGTATGATTAATGTAAGAGTTGGAGAACAAGCGATAATCCACCGAAACCTGCCGGTGCTTGGGTAGTACGTAAGTCGAGGTAATTTGTGATTATGTTTTACTTTTGGTATCCGTGCAACACGGGTGTTTTGTTACAACAGAGTCTCGCTTTGTTGTGCCCCCTTTAC AATACTATAATACTC ] [+] EMBL BM645976 [ ccGTGGACCCAAAGCACGTGCATAGAATGCGCAATACACGCGTCGTCGTTAAACGTCCCTTTTTGTGAAGCAAAAAACAAACCGATTGGCCTTTGATGCTACATCACACCCCCTCCCCCCCATTGTGTGTTTAGTGCGATGCGGCTTTATATTATTACTATTATTGATGCACCTTTTTGCAATCAGTACCAACAAAACCAA AAAAGGAAAAAATACTCAACCAAAACGCTCTGGCGTAGTGAACACGCGAGCATACTATGCATGGTGGGGCGTAATTTATTATCTGCCTTGTCCGTTTTGCGCTTACTGAATCTTACTGGATATATATACAAATATTTCGTAAAGTTGTGTGCATCTATTTGCTGCTTGCTCTACGCGTTACCGATATTCAAACTTAGTATGATTAATGTAAGAGTTGGAGAACAAGCGATAATCCACCGAAACCTGCCGGTGCTTGGGTAGTACGTAAGTCGAGGTAATTTGTGATTATGTTTTACTTTTGTTATCCGTGCAACACGGTTGTTTTGTTACAACAGAGTCTCGCTTTGTTGTG CCCCTTTACAAATACTATAATACTCCAACTGAATTGTGAACAAACAAGCAAACAATTGTCTCATTGTGGCTAGTGCAAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8222#0 CGGTGGTCGATGATTTGGATATGGATATGCCGAGCGACATTAGCTCGGAGCAAAACACGA 60 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 ACCAGAATGTGGCGAACTTTATCAATAGCTACGTCCTCGACACGACCACGAATGCTGCCG 120 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 GCGAGCTGGAACCGATCCTTCGTCCCGCGTCCCGTTCCCAGTCGGAAGAGAACATCGTGC 180 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 TCGACATTGGCCGGGAAGCGATAAGCGTTCAGAATCTTCAGGAACGCGTCACGACGGCGG 240 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 CGAGTAACTTTGTGAGCAAGGTGTCAAACACGCTCACCAGCATTACCGCCTCGAAACCGA 300 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 TCGCAGCAGGCGGCTCGCAGAACGAGCTGCAAACCAACCTGGATGCACTGATCGCCCGCA 360 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 GCCCGTCCGACGAGTTCATCTTTCACGTGCCGAAGGATTCCCACCTGTCGCCGTACTGGG 420 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 CCTCCGATGAGGTGTTGAGTCAATTTCCCCCGACCAAGATACTGACCGTCGTGCTCGATC 480 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 CCTGTCTGGATGATTGTGTGATGTTTGCCAAAAGACTGAAGAGCTTACACCGGTCCGTTG 540 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 CGCTTGACATTCTGCCCGGGCTGCCGCATGGATTCTTAAACTTTGCAACTATCTCCAAAG 600 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 AAGCGCACGATGGTTCGAAGCTGTGCGTGAAGCGTATTGCCGAGCTGCTCGAAATACCGA 660 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 CCACGCTGGACGATCCGGGCACGAAGCAGGGCTGCTGTTAGCGAAAATGCTGGTAAGGCA 720 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 GTAGGGCGTCGTCGTCGGCTGCCAGGCATTGCCGCCACTCGACTGAAAACTGTTGTTCCG 780 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 TAAAGCCAAACCAAAATTTGGAACCAAAACCAAGTAAACAACAGGCTCTAGAGGCTTTTA 840 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 TTTAGCTCAAATGAAACAAACAAGAGGCTCATACTCCTGGTGCATTACCGAACAACTCCA 900 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 GAAAGTGTCCAGCGACGGAACCGAGTGGACCCAAAGCACGTGCATAGAATGCGCAATACA 960 consensus_8222#1 --------CCGCCCACGCGTCCG-GTGGACCCAAAGCACGTGCATAGAATGCGCAATACA 51 ** * *** *** ************************************ consensus_8222#0 CGCGTCGTCGTTAAACGTCCCTTTTTGTGAAGCAAAAACACAAACCGATTGGCCTTTGAT 1020 consensus_8222#1 CGCGTCGTCGTTAAACGTCCCTTTTTGTGAAGCAAAAA-ACAAACCGATTGGCCTTTGAT 110 ************************************** ********************* consensus_8222#0 GCTACATCACACCCCCTCCCCCCCATTGTGTGTTTAGTGCGATGCGGCTTTATATTATTA 1080 consensus_8222#1 GCTACATCACACCCCCTCCCCCCCATTGTGTGTTTAGTGCGATGCGGCTTTATATTATTA 170 ************************************************************ consensus_8222#0 CTATTATTGATGCACCTTTTTGCAATCAGCACCAACAAAACCAAAAGAAAAAGAAAAAAC 1140 consensus_8222#1 CTATTATTGATGCACCTTTTTGCAATCAGTACCAACAAAACCAAAAGAAAAGGAAAAAAT 230 ***************************** ********************* ******* consensus_8222#0 ACTCAACCAAAACGCTCTGGCGTAGTTAACACGCGAGCATAC---ATATGGTGGGGCGTA 1197 consensus_8222#1 ACTCAACCAAAACGCTCTGGCGTAGTGAACACGCGAGCATACTATGCATGGTGGGGCGTA 290 ************************** *************** ************* consensus_8222#0 ATTTATTATCTGCCTTGTCCGTTTTGCGCTTACTGAATCTTACTGGATATATATATATAC 1257 consensus_8222#1 ATTTATTATCTGCCTTGTCCGTTTTGCGCTTACTGAATCTTACTGGATATATATA----- 345 ******************************************************* consensus_8222#0 ACAAATATTTCGTAAAGTTGTGTGCATCTATTTGCTGCTTACTCTACGCGTTACCGATAT 1317 consensus_8222#1 -CAAATATTTCGTAAAGTTGTGTGCATCTATTTGCTGCTTGCTCTACGCGTTACCGATAT 404 *************************************** ******************* consensus_8222#0 TCAAACTTAGTATGATTAATGTAAGAGCGTCGCGTTAGGAGAAGTTTGGAGAACAAGCGA 1377 consensus_8222#1 TCAAACTTAGTATGATTAATGTAAGAG------------------TTGGAGAACAAGCGA 446 *************************** *************** consensus_8222#0 TAATCCACCGAAACC-ACCGGTGCTTGGGTAGTACGTAAGTCGAGGTAATTTGTGATTAT 1436 consensus_8222#1 TAATCCACCGAAACCTGCCGGTGCTTGGGTAGTACGTAAGTCGAGGTAATTTGTGATTAT 506 *************** ******************************************* consensus_8222#0 GTTATCCTTTTACTTTTGNTATCCGTGCAACACGGGTGTTTTGTTAC------------- 1483 consensus_8222#1 GTT------TTACTTTTGGTATCCGTGCAACACGGGTGTTTTGTTACAACAGAGTCTCGC 560 *** ********* **************************** consensus_8222#0 ------------------------------------------------------------ consensus_8222#1 TTTGTTGTGCCCCCTTTACAATACTATAATACTCCAACTGAATTGTGAACAAACAAGCAA 620 consensus_8222#0 ------------------------------ consensus_8222#1 ACAATTGTCTCATTGTGGCTAGTGCAAGGA 650 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||