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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1030 fasta sequence
[TCAGCAGAATCGCCAGACGGTTAAATTAAGTTTCTTGCTGTGAACCAATTGCATGAAGCTTGCAAATGGATGCCAGCTATCGACGGGNACACGTTTGATACGACATGGACGCTTAGAAGTGCGTATTGGCATTAAGCAAGATAGCAACCCAGGAATGGTTTCAATCGTCACGCCTGATACAAAAGAGCTCACCCTTCAGCTGCAAACCATACAGGCGGAGGGTGCGGTCGGTGTAAAGAAACCAAAGTTCGGATACGAATTCGGGTCGGCCATTGTGGATGTGCTGAAGNGGCCAAATCGCATCCTG-CTCGAGCTACTAGAGTACGAACCGGACAGCACAGTGGACGCTGCTTACCGCAGCCCTGCTAATGAACACGCNATCGATCGTCGTAGCTATCACGAAACAATACGCCAACATCTGACGAAGCTGGAAACGGTCGACGCGCTTCGGAACAGGATATTATCTTGATCTTGCTAGCCAAATGGGCGATCGACAAATCGGCTAGAACAGTGGATCGCAANCTGGTCAATTGCACGTGACGGGAATCGATCTTTCCGGACTTCAATTGAGCGTTGTACACTACACTCCCTAACTCGCCACGGCAAATGCTATTACTCTGCAGTGAACACTCGGCTCGTAACATCGAAATTTCGCGAGTGTTGGTGATTTGGTGTTCTGCCCGNACANGCGTTAACTNTTTGGACCGNAAACTCAATAGGCGGGGAGAGGACGCCTCGGGAATACAGGAAGGGGTGGCTTGGACAATANCCCCGGTTGGGTTGGGACACGCAACATAATTCTNACACATTGNGGTAACCCGGCGGGCACACCAGGACAATTAAGCANAAAGAACGCTGGCCTCAACCCAAAGTTTGAGAAGCAATNGGNTCTAAAGAACCATCACCTTTTCTTGGTTCAACAAACCAACATCGGTTACTNTCANGGNAATCGAGCCCACATAANNTTTCGAGATCACTCCGCACAAGAAACACACACAACATCGTGGCCGCGATACTCTAGAAGGGACAA]
[+] EMBL AL929786 [TCAGCAGAATCGCCAGACGGTTAAATTAAGTTTCTTGCTGTGAACCAATTGCATGAAGCTTGCAAATGGATGCCAGCTATCGACGGGNACACGTTTGATACGACATGGACGCTTAGAAGTGCGTATTGGCATTAAGCAAGATAGCAACCCAGGAATGGTTTCAATCGTCACGCCTGATACAAAAGAGCTCACCCTTCAGCTGCAAACCATACAGGCGGAGGGTGCGGTCGGTGTAAAGAAACCAAAGTTCGGATACGAATTCGGGTCGGCCATTGTGGATGTGCTGAAGNGGCCAAATCGCATCCTG CTCGAGCTACTAGAGTACGAACCGGACAGCACAGTGGACGCTGCTTACCGCAGCCCTGCTAATGAACACGCNATCGATCGTCGTAGCTATCACGAAACAATACGCCAACATCTGACGAAGCTGGAAACGGTCGACGCGCTTCGGAACAGGATATTATCTTGATCTTGCTAGCCAAATGGGCGATCGACAAATCGGCTAGAACAGTGGATCGCAANCTGGTCAATTGCACGTGACGGGAATCGATCTTTCCGGACTTCAATTGAGCGTTGTACACTACACTCCCTAACTCGCCACGGCAAATGCTATTACTCTGCAGTGAACACTCGGCTCGTAACATCGAAATTTCGCGAGTGTTGGTGATTTGGTGTTCTGCCCGNACANGCGTTAACTNTTTGGACCGNAAACTCAATAGGCGGGGAGAGGACGCCTCGGGAATACAGGAAGGGGTGGCTTGGACAATANCCCCGGTTGGGTTGGGACACGCAACATAATTCTNACACATTGNGGTAACCCGGCGGGCACACCAGGACAATTAAGCANAAAGAACGCTGGCCTCAACCCAAAGTTTGAGAAGCAATNGGNTCTAAAGAACCATCACCTTTTCTTGGTTCAACAAACCAACATCGGTTACTNTCANGGNAATCGAGCCCACATAANNTTTCGAGATCACTCCGCACAAGAAACACACACAACATCGTGGCCGCGATACTCTAGAAGGGACAA]
[-] EMBL AGA281415 [ TTTGATACGACATGGACGCTTAGAAGTGCGT TTGGCATTAAGCAAGATAGCAACCCAGGAATGGTTTCAATCGTCACGCCTGATACAAAAGAGCTCACCCTTCAGCTGCAAACCATACAGGCGGAGGGTGCGGTCGGTGTAAAGAAACCAAAGTTCGGATACGAATTCGGGTCGGCCATTGTGGATGTGCTGAAG GCCCAACTCGCATCCTGCCTCGAGCTACTAGAGTACGAACCGGACAGCA AGTGGACGCTGCTTACCGCAGCCCTGCTAATGAA A GCAATCGATCGTCGTAGCTATCACGAAACAATACGCCAACATCTGACGAAGCTGGAAACGGTCGACGCGCTTCGGAA AGGATATTATCTTGATCTTGCTAG CAAATGGGCGATCGA AAATCGGCTAGAACAGTGGATCG AAGCTGGTAAATTG A GTGA GGGAATCGATCTTTCCGGACTTCAATTGAGCGTTGTACACTACACTCCCTACCTCGCCACGGCAAATGCTATTAATCTG AGTGAA AATCGGCTCGTAA ATCGAA ]
consensusID : consensus_8234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1004 fasta sequence
[CCAAGAATCGCGCACGAGTNGGTAAATAACAAATCACCAAAACAAACCCTCTGCTTTGCTCGCATCAACGAAAACGCCTTA-AAAATTGTCTCA--AAATGCATGGTCGTTTAAAAGTCCGCACGAGCGCTGAAGAGGCGGCTCGGAAGAAGCTGG-AACA-GCAACAAAAAGTGAAGATGTTCCGCGCAGCGATGGGACGTATTTTGGA--GAAGAAAACTGCGCAAGAATACG-ATGCCGAA-ATGATGGAGCTAACGGCG-AAACTGTTGAGCAGCAA-TCCGGATATAGCTACGTTGTGGAACCTGCGTCGCTTGTGCATACTGGCGA-GGCCAGAGGGTGAGGACAGCTCCGC-GGTGTTCGA-TAAGGA-TCTTGGATTTACGGAAA--TGTGCCTGATGGTGAATCCAAAATCGTACTGCGCCTGGCACCATCGTT-GCTGGATACTGGAGAATGCACCAAAGGCGGACTGGCAGAAGGAGGTTGACCTATGCACCAAGTACCTCAAGCTGGATGAGCGTAACTTCCACTGCTGGGACTATCGACGTTATGTGGTGGAAAAGGCAGGCGTGACTCC-GGAGAAAGAGTTCGCCTTCTGTACGGAGAAGATTGAGAAAAACTTCTCCAACTACTCGTCGTGGCATTACCGCAGCAAGCTGCTACCGCTGCTCTACCCG-AACGTGGAAGATCCATCGCGTCCAATCAGCGAAGAAAAACTGAAAGAAGAGCTGGAACTCGTGCTTACGGCGGCATTTACTGATCCGAACGATAGCAGCGNGTGGTTTTACCAGCGCTGGCTGCTAGGCTATGCACAGCCAGAGCTCGATCTGGCCGCTTGCCGTATCGATGCCAAGCAAAACCTGGCCGTACTGTCCTTCAGCAAACCGATAAATCTGTCAACGGGTGGATACAAGCTTACAGTTTCTTGCTGTGATAATTGCAACGAAGCAAGCAAATGGATGCCAGCTATCGACGGGAACACGTTTGATACGACATGGACGCTTAGAAGTGCGTTT]
[+] EMBL BX469215 [CCAAGAATCGCGCACGAGTNGGTAAATAACAAATCACCAAAACAAACCCTCTGCTTTGCTCGCATCTACGAAAACGCTTTANTAAATTGTCTCAGTAAGTGCATGGTCGTTTAAAAGTCCGCACGAGCGCTGAAGAGGCGGCTCGGAAGAAGCTGGTAACAGGCAACAAAAAGTGAAGATGTTCCGCGCAGCGAT GGACGTATTTTGGACGGAAGAAAACTGCGCAAGAATACGCATGCCGAACATGATGGAGCTAACGGCGAAAACTGTTGAGCAGCAAGTCCGGATATAGCTACGTTGTGGAACCTGCGTCGCTTGTGCATACTGGCGACGGCCAGAGGGTGAGGACAGTTCCGCGGGTGTTCGAGTAAGGAGTCTTGGATTCACGGAAAAGTGTGCCTGATGGTGAATCCAAAATCGTACTGTGCCTGGCACCATCGTTGGCTGGATACTGGAGAATGCAgc ]
[+] EMBL BM609691 [ ccgCCAAAACAAACCCTCTGCTTTGCTCGCATCAACGAAAACGCCTTA AAAATTGTCTCA AAATGCATGGTCGTTTAAAAGTCCGCGCGAGCGCTGAAGAGGCGGCTCGGAAGAAGCTGG AACA ACAACAAAAAGTGAAGATGTTCCGCGCAGCGATGGGACGTATTTTGGA GAAGAAAACTGCGCAAGAACACG ATGCCGAA ATGATGGAGCTAACGGCG AAACTGTTGAGCAGCAA TCCGGATATAGCTACGTTGTGGAACCTGCGTCGCTTGTGCATACTGGCGA GGCCAGAGGGTGAGGACAGCTCCGC GGTGTTCGA TAAGGA TCTTGGATTTACGGAAA TGTGCCTGATGGTGAATCCAAAATCGTACTGCGCCTGGCACCATCGTT GCTGGATACTGGAGAATGCACCAAAGGCGGACTGGCAGAAGGAGGTTGACCTATGCACCAAGTACCTCAAGCTGGATGAGCGTAACTTCCACTGCTGGGACTATCGACGTTATGTGGTGGAAAAGGCAGGCGTGACTCCGGGAGAAAGAGTTCGCCTTCTGTACGGAGAAGATTGAGAAAAACTTCTCCAACTACTCGTCGTGGCATTACCGCAGCAAGCTGCTACCGCTGCTCTACCCGAAACGTGGAAGATCCATCGCGTCCAATCAGCGAAG AGAACTGA ]
[+] EMBL BM615545 [ ccgCTCTGCTTTGCTCGCATCAACGAAAACGCCTTA AAAATTGTCTCA AAATGCATGGTCGTTTAAAAGTCCGCACGAGCGCTGAAGAGGCGGCTCGGAAGAAGCTGG AACA ACAACAAAAAGTGAAGATGTTCCGCGCAGCGATGGGACGTATTTTGGA GAAGAAAACTGCGCAAGAACACG ATGCCGAA ATGATGGAGCTAACGGCG AAACTGTTGAGCAGCAA TCCGGATATAGCTACGTTGTGGAACCTGCGTCGCTTGTGCATACTGGCGA GGCCAGAGGGTGAGGACAGCTCCGC GGTGTTCGA TAAGGA TCTTGGATTTACGGAAA TGTGCCTGATGGTGAATCCAAAATCGTACTGCGCCTGGCACCATCGTT GCTGGATACTGGAGAATGCACCAAAGGCGGACTGGCAGAAGGAGGTTGACCTATGCACCAAGTACCTCAAGCTGGATGAGCGTAACTTCCACTGCTGGGACTATCGACGTTATGTGGTGGAAAAGGCAGGCGTGACTCC GGAGAAAGAGTTCGCCTTCTGTACGGAGAAGATTGAGAAAAACTTCTCCAACTACTCGTCGTGGCATTACCGCAGCAAGCTGCTACCGCTGCTCTACCCG AACGTGGAAGATCCATCGCGTCCAATCAGCGAAGAAAAACTGAAAGAAG ]
[+] EMBL BM577960 [ ccgGCATCTACGAAAACGCCTTA GAAATTGTCTCA AAATGCATGGTCGTTTAAAAGTCCGCACGAGCGCTGAAGAGGCGGCTCGGAAGAAGCTGG AACA GCAACAAAAAGTGAAGATGTTCCGCGCAGCGATGGGACGTATTTTGGA GAAGAAAACTGCGCAAGAATACG ATACCGAA ATGATGGAGCTAACGGCG AAACTGTTGAGCAGCAA TCCGGATATAGCTACGTTGTGGAACCTGCGTCGCTTGTGCATACTGGCGA GGCCAGAGGGTGAGGACAGCTCCGC GGTGTTCGA TAAGGA TCTTGGATTTACGGAAA TGTGCCTGATGGTGAATCCAAAATCGTACTGCGCCTGGCACCATCGTT GCTGGATACTGGAGAATGCACCAAAGGCGGACTGGCAGAAGGAGGTTGACCTATGCACCAAGTACCTTAAGTTGGATGAGCGTAACTTCCACTGCTGGGACTATCGACGTTATGTGGTGGAAAAGGCAGGCGTGACTCC GGAGAAAGAGTTCGCCTTCTGTACGGAGAAGATTGAGAAAAACTTCTCCAACTACTCGTCGTGGCATTACCGCAGCAAGCTGCTACCGCTGCTCTACCCG AACGTGGAAGATCCATCGCGTCCAATCAGCGAAGAAAAACTGAAAGAAGAGCTGGAACTCGTGCTTACGGCGGCATTTACTGATCCGAACGAT ]
[+] EMBL BM583450 [ ccgGCATCAACGAAAACGCCTTA AAAATTGTCTCA AAATGCATGGTCGTTTAAAAGTCCGCACGAGCGCTGAAGAGGCGGCTCGGAAGAAGCTGG AACA ACAACAAAAAGTGAAGATGTTCCGCGCAGCGATGGGACGTATTTTGGA GAAGAAAACTGCGCAAGAACACG ATGCCGAA ATGATGGAGCTAACGGCG AAACTGTTGAGCAGCAA TCCGGATATAGCTACGTTGTGGAACCTGCGTCGCTTGTGCATACTGGCGA GGCCAGAGGGTGAGGACAGCTCCGC GGTGTTCGA TAAGGA TCTTGGATTTACGGAAA TGTGCCTGATGGTGAATCCAAAATCGTACTGCGCCTGGCACCATCGTT GCTGGATACTGGAGAATGCACCAAAGGCGGACTGGCAGAAGGAGGTTGACCTATGCACCAAGTACCTCAAGCTGGATGAGCGTAACTTCCACTGCTGGGACTATCGACGTTATGTGGTGGAAAAGGCAGGCGTGACTCC GGAGAAAGAGTTCGCCTTCTGTACGGAGAAGATTGAGAAAAACTTCTCCAACTACTCGTCGTG ]
[+] EMBL AL694723 [ cgaggtAAAACG CTTT AAAATTGTCTCA TAATGCATGGTCGTTTAAAAGTCCGCACGAGCGCTGAAGAGGCGGCTCGGAAGAAGCTGG AACA GCAACAAAAAGTGAAGATGTTCCGCGCAGCGATGGGACGTATTTTGGA GAAGAAAACTGCGCAAGAATACG ATGCCGAA ATGATGGAGCTAACGGCA AAACTGTTGAGCAGCAA TCCGGATATAGCTACGTTGTGGAACCTGCGTCGCTTGTGCATACTGGCGA GGCCAGAGGGTGAGGACAGTTCCGC GGTGTTCGA TAAGGA TCTTGGATTCACGGAAA T ]
[+] EMBL AGA283028 [ AAGATCCATCACGTCCAATCAGCGAAGAAAAACTGAAAGAAGAGCTGGAACTCGTGCTTACGGCAGCATTTACTGATCCGAACGATAGCAGCGNGTGGTTTTACCAGCGCTGGCTGCTAGGCTATGCACAGCCAGAGCTCGATCTGGCCGCTTGCCGTATCGATGCCAAGCAAAACCTGGCCGTACTGTCCTTCAGCAAACCGATAAATCTGTCAACGGGTGGATACAAGCTTACAGTTTCTTGCTGTGATAATTGCAACGAAGCAAGCAAATGGATGCCAGCTATCGACGGGAACACGTTTGATACGACATGGACGCTTAGAAGTGCGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8234#0 TCAGCAGAATCGC---CAGACGGTTAAATTA-AGTTTCTTGCTGTGAACCAATTGCATGA 56
consensus_8234#1 CCA--AGAATCGCGCACGAGTNGGTAAATAACAAATCACCAAAACAAACCCTCTGCTTTG 58
** ******** * * ***** * * * **** *** *
consensus_8234#0 AGCTTGCAAATGGATGCCAGCTATCGACGGGNACACGTTTGATACGACATGGACGCTTAG 116
consensus_8234#1 CTCGCATCAACGAAAACGCCTTA-------AAAATTGTCTCAAAATGCATGGTCGTTTAA 111
* ** * * * ** * ** * * * ***** ** ***
consensus_8234#0 AAGTGCGTATTGGCATTAAGCAAGATAGCAACCCAGGAATGGTTTCAATCGTCACGCCTG 176
consensus_8234#1 AAGTCCGCACGAGCGCTGAAGAGG----CGGCTCGGAAGAAGCTGGAACAGCAACA--AA 165
**** ** * ** * * * * * * * * * * * ** * **
consensus_8234#0 ATACAAAAGAGCTCACCCTTCAGCTGCAAACCATACAGGCGGAGGGTGCGGTCGGTGTAA 236
consensus_8234#1 AAGTGAAGATGTTCCGCGCAGCGATGGGACGTATTTTGGAGAAGAAAACTGCGCAAGAAT 225
* ** * ** * * ** * ** ** * ** * * * *
consensus_8234#0 A-GAAACCAAAGTTCGGATACGAATTCGGGTCGGCCATTGTGGAT--GTGCTGAAGNGGC 293
consensus_8234#1 ACGATGCCGAAATGATGGAGCTAA--CGGCGAAACTGTTGAGCAGCAATCCGGATATAGC 283
* ** ** ** * * * ** *** * *** * * * * ** **
consensus_8234#0 CAAATCGC--ATCCTGCTCGAGCTACTAGAGTACGAACCGGACAGCACAGTGGACGCTGC 351
consensus_8234#1 TACGTTGTGGAACCTGCGTCGCTTGT--GCATACTGGCGAGGCCAGAGGGTGAGGACAGC 341
* * * * ***** * * *** * * * * *** * **
consensus_8234#0 TTACCGCAGCCCTGCTAATGAACACGCNATCGATCGTCGTAGCTATCACGAAACAATACG 411
consensus_8234#1 T--CCGCGGTGTT--CGATAAGGAT--CTTGGATTTACGGAAATGTGCCTGATGGTGAAT 395
* **** * * ** * * * *** ** * * * * * *
consensus_8234#0 CCAACATCTGACGAAGCTGGAAACGGTCGACGCGCTTCGGAACAGGATATTATCTTGATC 471
consensus_8234#1 CCAAAATCGTACTGCGCCTGGCACCATCGTTGCTGGATACTGGAGAATGC-ACCAAAGGC 454
**** *** ** ** * ** *** ** ** ** * * *
consensus_8234#0 TTGCTAGCCAAATGGGCGATCGACAAAT-CGGCTAGAACAGTGGATCGCAANCTGGTCAA 530
consensus_8234#1 GGACTGGCAGAA--GGAGGTTGACCTATGCACCAAGTACCTCAAGCTGGATGAGCGTAAC 512
** ** ** ** * * *** ** * * ** ** * * ** *
consensus_8234#0 TTGCACGTGACGGGA--ATCGATCTTTCCGGACTTCAATTGAGCGTTGTACACTACACTC 588
consensus_8234#1 TTCCAC-TGCTGGGACTATCGA-CGTTATGTGGTGGAAAAGGCAGGCGTGACTCCGGAGA 570
** *** ** **** ***** * ** * * ** * * **
consensus_8234#0 CCTAACTCGCCACGGCAAATGCTATTACTCTGCAGTGAACACTCGGCT-CGTAACATCGA 647
consensus_8234#1 AAGAGTTCGCCTTCTGTACGGAGAAGATTGAGAAAAACTTCTCCAACTACTCGTCGTGGC 630
* ***** * * * * * * * * ** * * * *
consensus_8234#0 AATTTCGCGAGTGTTGGTGATTTGGTGTTCTGCCCGNACANGCGTTAACTNTTTGGACCG 707
consensus_8234#1 ATTACCGCAGCAAGCTGCTACC-GCTGCTCTACCCGAACGTGGAAGATCCAT-------- 681
* * *** * * * ** *** **** ** * * * *
consensus_8234#0 NAAACTCAATAGGCGGGGAGAGGACGCCTCGGGAATACAGGAAGGGGTGGCTTGGACAAT 767
consensus_8234#1 CGCGTCCAATCAGCGAAGAAAAACTGAA--AGAAGAGCTGGAACTCGTGCTTACGGCGGC 739
**** *** ** * * * * * **** *** * * *
consensus_8234#0 ANCCCCGGTTGGGTTGGGACACGCAACATAATTCTNACACATTGNGGTAACCCGGCGGGC 827
consensus_8234#1 ATTTACTGATCCGAACGATAGCAGCGNGTGGTTTTACCAGCGCTGGCTGCTAGGCTATGC 799
* * * * * * * * ** * ** * * * **
consensus_8234#0 ACA-CCAGGAC---AATTAAGCANAAAGAACGCTGGCCTCAACCCAAAGTTTGAGAAGCA 883
consensus_8234#1 ACAGCCAGAGCTCGATCTGGCCGCTTGCCGTATCGATGCCAAGCAAAACCT--GGCCGTA 857
*** **** * * * * * *** * *** * * * *
consensus_8234#0 ATNGGNTCTAAAGAACCATCA--CCTTTTCTTGGTTCAACAAACCAACATCGGTTACTNT 941
consensus_8234#1 CTGTCCTTCAGCAAACCGATAAATCTGTCAACGGGTGGATACAAGCTTACAGTTTCTTGC 917
* * * **** * ** * ** * * * * * * ** *
consensus_8234#0 CANGGNAATCGAGCCCACATAANNTT-TCGAGATCACTCCGCACAAGAAACACACACAAC 1000
consensus_8234#1 TGTGATAATTGCAACGAAGCAAGCAAATGGATGCCAGCTATCGACGGGAACACGTTTGAT 977
* *** * * * ** * ** ** * * ***** *
consensus_8234#0 ATCGTGGCCGCGATACTCTAGAAGGGACAA- 1030
consensus_8234#1 AC---GACATGGACGCT-TAGAAGTGCGTTT 1004
* * * ** ** ****** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||