These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1027 fasta sequence [CTGGATATGCATTCGTGTTGTGCGGCATGTGTGGTGCCCGAATCTGAACTGGGAATTGCACGCTTTATCAAAACAATGGATATCATATTGAGTAATTTCATCGTCGATGAACATCCACAGGTTTCAGAGCCCCCCAAGAACACCAGTACC-GCAGTCAATAACAAGGATGAAATTCCAATACGTTTTACTAAAATGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTG-AGCGTTCAGAATAGTGCCAGCAATGAAAAATCACGCCCACGAGAGAATGGTGAAACCAAGGGCAATGTTCCTTCATCCGACGAAAAGCGCCCGAAAGAACAGGTGGTAAAGCAAGAGAAACGGCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTGACTCGATTCGGCCACCTGAAGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAAT-CCTTCGACTCGCTTGATATTCATCCACACTCGAAGAAGAATATCGCAGATCTGCTACAATACGAACACCTAACAACGGTGC-AAAGCATGGCAATTCCGTCGCTGCTCAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGAAAAACGCTCGCCTATGCGCTGCCCCTTATCGAAAGGCTGCATACCATCAGGCCACAGATCCACCGCAGTGATGGGATTCGGGCGGTAGTTATCGTTCCAACGCGCGAGCTTGCTGTACAAACGTATGAGTTGATACAAAAGCTGCTGAAACCCTTCACCTGGATCGTCCCAGGGTATCTGACCGGAGGGGAGAAGCGCAAAA-CCGAGAAGGCTAGACTGCGGGCCGGTTTGAACATACTGATCGCGACACCGGGACGGCTGTGTGACCACATTCGGAATACGGAATCGCTCAAGTTTGGCAATGTGTGCTGTCTCGTGCTGGATGAAGCTGATCGATTGCTTGAGCTTGGATACGAGACGGATGTGAAACAGATTATCGAAGCAATGATGGAAGCCATTTAAAAAAAAA] [+] EMBL CNS09FYW [CTGGATATGCACTCGTGTTGTGCGGCATGTGTGGTGCCCGAATCTGAACTGGGAATTGCACGCTTTATCAAAACAATGGATATCATATTGAGTAATTTCATCGAAGATGAACATCCACAGGTTTCAGAGCCCCCCAAGAACACCAGTACC GCAGTCAATAACAAGGATGAAATTCCAATACGTTTTACTAAAATGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTGCAGCGTTCAGAATAGTGCCAGCAATGAAAAATCACGCCCACGAGAGAATGGTGAAACCAAGGGCAATGTTCCTTCATCCGACGAAAAGCGCCCGAAAGAACAGGTGGTAAAGCAAGAGAAACGGCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTGACTCGATTCGGCCACCTGAAGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAAT CCTTCGACTCGCTTGATATTCATCCACACTCGAAGAAGAATATCGCAGATCTGCTACAATACGAACACCTAACAACGGTGC AAAGCATGGCAATTCCGTCGCTGCTCAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGAAAAACGCTCGCCTATGCGCTGCCCCTTATCGAAAGGCTGCATACCATCAGGCCACAGATCCACCGCAGTGATGGGATTCGGGCGGTAGTTATCGTTCCAACGCGCGAGCTTGCTGTACAAACGTATGAGTTGATACAAAAGCTGCTGAAACCCTTCACCTGGATCGTCCCAGGGTATCTGACCGGAGGGGAGAAGCGCAAAA CCGAGAAGGCTAGACTGCGGGCCGGTTTGAACATACTGATCGCGACACCGGGACGGCTGTTTGACCACATTCGGAATACGGAATCGCTCAAGTTTGGCAATGTGTGCTGTCTCGTGCTGGATGAA ] [+] EMBL CNS09EQM [ tTTCGTGTTGTGCGGCATGTGTGGTG CCGAATCTGAACTGGGAATTGCACGCTTTATCAAAACAATGGATATCATATTGAGTAATTTCATCGTCGATGAACATCCACAGGTTTCAGAGCCCCCCAAGAACACCAGTACC GCAGTCAATAACAAGGATGAAATTCCAATACGTTTCACTAAAATGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTG AGCGTTCAGAATAGTGCCAGCAATGAAAAATCACGCCCACGAGAGAATGGTGAAACCAAGGGCAATGGTCCTTCATCCGACGAAAAGCGCCCAAAAGAACAGGTGGTAAAGCAAGAGAAACGGCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTGACTCGATTCGGCCACCTGAAGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAAT CCTTCGACTCGCTTGATATTCATCCACACTCGAAGAAGAATATCGCAGATCTGCTACAATACGAACACCTAACAACGGTGC AAAGCATGGCAATTCCGTCGCTGCTCAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGAAAAACGCTCGCCTATGCGCTGCCCCTTATCGAAAGGCTGCATACCATCAGGCCACAGATCCACCGCAGTGATGGGATTCGGGCGGTAGTTATCGTTCCAACGCGCGACCTTGCTGTACAAACGTATGAGTTGATACAAAA ] [+] EMBL CNS09LTI [ ggtagcatcTGTG GTGAT TGT GTGCCCGAATCTGAACTGGGAATTGCACGCTTTATCAAAACAATGGATATCATATTGAGTAATTTCATCGTCGATGAACATCCACAGGTTTCAGAGCCCCCCAAGAACACCAGTACC GCAGTCAATAACAAGGATGAAATTCCAATACGTTTTACTAAAATGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTG AGCGTTCAGAATAGTGCCAGCAATGAAAAATCACGCCCACGAGAGAATGGTGAAACCAAGGGCAATGTTCCTTCACCCGACGAAAAGCGCCCGAAAGAACAGGTGGTAAAGCAAGAGAAACGGCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTGACTCGATTCGGCCACCTGAAGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAAT CCTTCGACTCGCTTGATATTCATCCACACTCGAAGAAGAATATCGCAGATCTGCTACAATACGAACACCTAACAACGGTGC AAAGCATGGCAATTCCGTCGCTGCTCAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGAAAAACGCTCGCCTATGCGCTGCCCCTTATCGAAAGGCTGCATACCATCAGGCCACAGATCCACCGCAGTGATGGGATTCGGGCGGTAGTTATCGTTCCAACGCGCGAGCTTGCTGTACAAACG ] [+] EMBL BM580276 [ CCG ATCTGAACTGGGAATTGCACGCTTTATCAAAACAATGGATATCATATTGAGTAATTTCATCGTCGATGAACATCCACAGGTTTCAGAGCCCCACAAGAACACCAGTACC CCAGTCAATAACAAGGATGAAATTCCAATACGTTTTACTAAAGTGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTG AGCGTTCAGAATAGTGCCAGCAATGAAAAATCACGCCCACGAGAGAATGGTGAAACCAAGGGCAATGTTCCTTCATCCGCCGAAAAGCGCCCTAAAGAACAGGTGGTAAAGCAAGAGAAACGGCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTGACTCGATTCGGCCACCTGAGGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAAT CCTTCGACTCGCTTGATATTCATCCACACTCGAAGAAGAATATCGCAGATCTGCTACAATATGAACACCTAACGACGGTGC AAAGCATGGCAATTCCGTCACTGCTCAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGAAAAACGCTCGCCTATGCGCTGCCCCTTATCGAAAGGCTGCATACCATTAGGCCACAGATCCACCGCAGCGATGGGATTCGGGCGGTAGTTATCGTTCCAACGCGCGAGC ] [+] EMBL CNS08FZK [ AATTTCATCGTCGATGAACATCCACAGGTTTCAGAGCCCCCCAAGAACACCAGTACCAGCAGTCAATAACAAGGATGAAATTCCAATACGTTTTACTAAAATGC ] [-] EMBL CNS09FYX [ AGAACACCAGTACC GCAGTCAATTACAAGGATGAAATTCCAATACGTTTTACTAAAATGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTG AGCGTTCAGAATAGTGCCAGCAATGAAAAATAACGCCCACGAGAGAATGGTGAAACCAAGGGCAATGTTCCTTCATCCGACGAAAAGCGCCCGAAAGAACAGGTGGTAAAGCAAGAGAAACGGCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTTACTCGATTCGGCCACCTGAAGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAAT CCTTCAACTCGCTTGATATTCATCCAAACTCGAAGAAGAATATCGCAGTTCTGCTACAATACGAACACCTAACAACGGTGC AAAGCATGGCAATTCCGTCGCTGCTCAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGAAAAAAACTCGCCTATGCGCTGCCCCTTATCGAAAGGCTGCATACCATCAGGCCACAGATCCACCGCAGTGATGGGATTCGGGCGGTAGTTATCGTTCCCACGCGCGAGCTTGCTGTACAAACGTATGAGTTGATACAAAAGCTGCTGAAACCCTTCACCTGGATCGTCCCAGGGTATCTGACCGGAGGGGAGAAGCGCAAAAGCCGAGAAGGCTAGACTGCGGGCCGGTTTGAACATACTGATCGCGACACCGGGACGGCTGTGTGACCACATTCGGAATACGGAATCGCTTAAGTTTGGCAATGTGTGCTGTCTCGTGCTGGATGAAGCTGATCGATTGCTTGAGCTTGGATACGAGACGGATGTGAAACAGATTATCGAAGCAATGATGGAAGCCATTTAAAAAAAAA] [-] EMBL CNS09LTJ [ TCAAGAGAAGCTGTTCAGTGAGCAATACCTTCAACTCGCTTGATATTCATCAAAACTCGAAGAAGAATATCGCAGTTCTGCTACAATACGAACACCTAACAACGGTGCAAAAGCATGGAAATTCCGTCGCTGCTAAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGAAAAACGCTCGCCTATGCGCTGCCCCTTATCGAAAGGCTGCATACCATCAGGCCACAGATCCACCGCAGTGATGGGATTCGGGCGGTAGTTATCGTTCCAACGCGCGAGCTTGCTGTACAAACGTATGAGTTGATACAGAAGCTGCTGAAACCCTTCACCTGGATCGTCCCAGGGTATCTGACCGGAGGGGAGAAGCGCAAAA CCGAGAAGGCTAGACTGCGGGCCGGTTTGAACATACTGATCGCGACACCGGGACGGCTGTGTGACCACATTCGGAATACGGAATCGCTCAAGTTTGGCAAT ] [-] EMBL CNS09EQN [ AACACCTAACAACGGTGC AAAGCATGGCAATTCCGTCGCTGCTCAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGAAAAACGCTCGCCTATGCGCTGCCCCTTATCGAAAGGCTGCATACCATCAGGCCACAGATCCACCGCAGTGATGGGATTCGGGCGGTAGTTATCGTTCCAACGCGCGAGCTTGCTGTACAAACGTATGAGTTGATACAAAAGCTGCTGAAACCCTTCACCTGGATCGTCCCAGGGTATCTGACCGGAGGGGAGAAGCGCAAAA CCGAGAAGGCTAGACTGCGGGCCGGTTTGAACATACTGATCGCGACACCGGGACGGCTGTGTGACCACATTCGGAATACGGAATCGCTCAAGTTTGGCAATGTGTGCTGTCTCGTGa ] consensusID : consensus_8270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [CCGCCCACGCGTCCGCCCGAATCTGAACTGGGAATTGCACGCTTTATCAAAACAATGGATATCATATTGAGTAATTTCATCGTCGATGAACATCCACAGGTTTCAGAGCCCCACAAGAACACCAGTACCCCAGTCAATAACAAGGATGAAATTCCAATACGTTTTACTAAAGTGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTGAGCGTTCAGAATAGTGCCAGCAATGAAAAATCACGCCCACGAGAGAATGGTGAAACCAAGGGCAATGTTCCTTCATCCGCCGAAAAGCGCCCTAAAGAACAGGTGGTAAAGCAAGAGAAACGGCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTGACTCGATTCGGCCACCTGAGGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAATCCTTCGACTCGCTTGATATTCATCCACACTCGAAGAAGAATATCGCAGATCTGCTACAATATGAACACCTAACGACGGTGCAAAGCATGGGCAATTCCGTCACTGCTCAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGGAAAACGCTCGCC] [+] EMBL BM591466 [CCGCCCACGCGTCCGCCCGAATCTGAACTGGGAATTGCACGCTTTATCAAAACAATGGATATCATATTGAGTAATTTCATCGTCGATGAACATCCACAGGTTTCAGAGCCCCACAAGAACACCAGTACCCCAGTCAATAACAAGGATGAAATTCCAATACGTTTTACTAAAGTGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTGAGCGTTCAGAATAGTGCCAGCAATGAAAAATCACGCCCACGAGAGAATGGTGAAACCAAGGGCAATGTTCCTTCATCCGCCGAAAAGCGCCCTAAAGAACAGGTGGTAAAGCAAGAGAAACGGCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTGACTCGATTCGGCCACCTGAGGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAATCCTTCGACTCGCTTGATATTCATCCACACTCGAAGAAGAATATCGCAGATCTGCTACAATATGAACACCTAACGACGGTGCAAAGCATGGGCAATTCCGTCACTGCTCAAGGGCACCGATGCATTGATACGCGCCCAAACTGGTTCGGGGAAAACGCTCGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8270#0 CTGGATATGCATTCGTGTTGTGCGGCATGTGTGGT-GCCCGAATCTGAACTGGGAATTGC 59 consensus_8270#1 ----------------------CCGCCCACGCGTCCGCCCGAATCTGAACTGGGAATTGC 38 * ** * * ************************ consensus_8270#0 ACGCTTTATCAAAACAATGGATATCATATTGAGTAATTTCATCGTCGATGAACATCCACA 119 consensus_8270#1 ACGCTTTATCAAAACAATGGATATCATATTGAGTAATTTCATCGTCGATGAACATCCACA 98 ************************************************************ consensus_8270#0 GGTTTCAGAGCCCCCCAAGAACACCAGTACCGCAGTCAATAACAAGGATGAAATTCCAAT 179 consensus_8270#1 GGTTTCAGAGCCCCACAAGAACACCAGTACCCCAGTCAATAACAAGGATGAAATTCCAAT 158 ************** **************** **************************** consensus_8270#0 ACGTTTTACTAAAATGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTGAG 239 consensus_8270#1 ACGTTTTACTAAAGTGCCAACAGGTAAAGCAATTATTGCTAAAAAACGACCCCAAGTGAG 218 ************* ********************************************** consensus_8270#0 CGTTCAGAATAGTGCCAGCAATGAAAAATCACGCCCACGAGAGAATGGTGAAACCAAGGG 299 consensus_8270#1 CGTTCAGAATAGTGCCAGCAATGAAAAATCACGCCCACGAGAGAATGGTGAAACCAAGGG 278 ************************************************************ consensus_8270#0 CAATGTTCCTTCATCCGACGAAAAGCGCCCGAAAGAACAGGTGGTAAAGCAAGAGAAACG 359 consensus_8270#1 CAATGTTCCTTCATCCGCCGAAAAGCGCCCTAAAGAACAGGTGGTAAAGCAAGAGAAACG 338 ***************** ************ ***************************** consensus_8270#0 GCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTGACTCGAT 419 consensus_8270#1 GCAATTGAAAACAGAAACCCCTGCCTACAGACCGCTATTGAGCAAACCAACTGACTCGAT 398 ************************************************************ consensus_8270#0 TCGGCCACCTGAAGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAATCCTTCGACTC 479 consensus_8270#1 TCGGCCACCTGAGGTACGTCCATTTCAAGAGAAGCTGTTCAGTGAGCAATCCTTCGACTC 458 ************ *********************************************** consensus_8270#0 GCTTGATATTCATCCACACTCGAAGAAGAATATCGCAGATCTGCTACAATACGAACACCT 539 consensus_8270#1 GCTTGATATTCATCCACACTCGAAGAAGAATATCGCAGATCTGCTACAATATGAACACCT 518 *************************************************** ******** consensus_8270#0 AACAACGGTGCAAAGCATGG-CAATTCCGTCGCTGCTCAAGGGCACCGATGCATTGATAC 598 consensus_8270#1 AACGACGGTGCAAAGCATGGGCAATTCCGTCACTGCTCAAGGGCACCGATGCATTGATAC 578 *** **************** ********** **************************** consensus_8270#0 GCGCCCAAACTGGTTCGGGAAAAACGCTCGCCTATGCGCTGCCCCTTATCGAAAGGCTGC 658 consensus_8270#1 GCGCCCAAACTGGTTCGGGGAAAACGCTCGCC---------------------------- 610 ******************* ************ consensus_8270#0 ATACCATCAGGCCACAGATCCACCGCAGTGATGGGATTCGGGCGGTAGTTATCGTTCCAA 718 consensus_8270#1 ------------------------------------------------------------ consensus_8270#0 CGCGCGAGCTTGCTGTACAAACGTATGAGTTGATACAAAAGCTGCTGAAACCCTTCACCT 778 consensus_8270#1 ------------------------------------------------------------ consensus_8270#0 GGATCGTCCCAGGGTATCTGACCGGAGGGGAGAAGCGCAAAACCGAGAAGGCTAGACTGC 838 consensus_8270#1 ------------------------------------------------------------ consensus_8270#0 GGGCCGGTTTGAACATACTGATCGCGACACCGGGACGGCTGTGTGACCACATTCGGAATA 898 consensus_8270#1 ------------------------------------------------------------ consensus_8270#0 CGGAATCGCTCAAGTTTGGCAATGTGTGCTGTCTCGTGCTGGATGAAGCTGATCGATTGC 958 consensus_8270#1 ------------------------------------------------------------ consensus_8270#0 TTGAGCTTGGATACGAGACGGATGTGAAACAGATTATCGAAGCAATGATGGAAGCCATTT 1018 consensus_8270#1 ------------------------------------------------------------ consensus_8270#0 AAAAAAAAA 1027 consensus_8270#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||