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Anopheles gambiae
cluster # 8328 cluster # 8328       Sequences # 10       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8328#0 length = 821 sequences # 6  
consensus_8328#1 length = 656 sequences # 1  
consensus_8328#2 length = 642 sequences # 1  
consensus_8328#3 length = 581 sequences # 1  
consensus_8328#4 length = 429 sequences # 1  

consensusID : consensus_8328#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 821
fasta sequence
                              [CCGGCGGGAAGTGTGAATAGATGTACCACAAACGAGTGAAAGTATTACCTGTTTGTTCGTGATCGATCGTTTCACT--------TGTGTCTGTGTGTGTGTGTGTGTGCAAAACAAACCAAACAAATGTCTGCATTTGCGCAATGGATTAAGCGTTACCCTGTAGTACGAGGCATGATTACGTACAGTTTTCTATGGCCAACGGGATGTTTCATTCAACAAAAACTCTCCGGCAAAAAGCTTGATGAAATCGATTGGAAGAAGTGTTGGCGATTTTTCTTCTACGGTGGATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCGATCATGTGGCCAAACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTATACACCGATGGCAATGACTGCGTTCTACTTCAGCATGAGCCTACTGGAGTCAAAAACTGTGGAGGAGTCACTAAACGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGTCGCACTGTGTATCTGGCCTTTCATACAAACATTCAACTTTTCCGTGGTTCCGGAAAAAAATCGCGTACCTTTCGTCAGTATGTGTAGTCTACTGTGGACCATATTTTTAGCTTACATGAAACAAAAAGAGCAAAAGGAACTCGAAGCCGGTA-TTTTCGTAAAATAATGTAATGCTCTGTAATGGCAGGAGCTATTTTACATTATCTCAAATGGTAGATAC-AAAGCAATTGCACCGATTCATACNATGCTGAACGAGGGTCGAGTTAAAGGGTGATTCCTTCGTTTACTTGGNAAAACAAGNGCAGTACTTCTTTTAAC]

[+] EMBL BM599657             [CCGGCGGGAAGTGTGAATAGATGTACCACAAACGAGTGAAAGTATTACCTGTTTGTTCGTGATCGATCGTTTCACTCGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGCAAAACAAACCAAACAAATGTCTGCATTTGCGCAATGGATTAAGCGTTACCCTGTAGTACGAGGCATGATTACGTACAGTTTTCTATGGCCAACGGGATGTTTCATTCAACAAAAACTCTCCGGCAAAAAGCTTGATGAAATCGATTGGAAGAAGTGTTGGCGATTTTTCTTCTACGGTGGATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCGATCATGTGGCCAAACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTATACACCGATGGCAATGACTGCGTTCTACTTCAGCATGAGCCTACTGGAGTCAAAAACTGTGGAGGAGTCACTAAACGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGTCGCACTGTGTATCTGGCCTTTCATACAAACATTCAACTTTTCCGTGGTTCCAGAAAAAAATCGCGTACCTTTCGTCAGTATGTGTAGTCTA                                                                                                                                                                                                                                     ]
[+] EMBL BX624785             [                    ATGTACCACAAACGAGTGAAAGTATTACCTGTTTGTTCGTGATCGATCGTTTCACT        TGTGTCTGTGTGTGTGTGTGTGTGCAAAACAAACCAAACAAATGTCTGCATTTGCGCAATGGATTAAGCGTTACCCTGTAGTACGAGGCATGATTACGTACAGTTTTCTATGGCCAACGGGATGTTTCATTCAACAAAAACTCTCCGGCAAAAAGCTTGATGAAATCGATTGGAAGAAGTGTTGGCGATTTTTCTTCTACGGTGGATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCGATCATGTGGCCAAACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTATACACCGATGGCAATGACTGCGTTCTACTTCAGCATGAGCCTACTGGAGTCAAAAACTGTGGAGGAGTCACTAAACGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGTCGCACTGTGTATCTGGCCTTTCATACAAACATTCAACTTTTCCGTGGTTCCGGAAAAAAATCGCGTACCTTTCGTCAGTATGTGTAGTCTACTGTGGACCATATTTTTAGCTTACATGAAACAAAAAGAGCAAAAGGAACTCGAAGCCGGTATTTTTCGTAAAATAATGTAATGCTCTGTAATGGCAGGAGCTATTTTACATTATCTC AATGGTAGATACAAAAGCAATTGCACCGATTCATACNATGCTGAACGAGGGTCGAGTTAAAGGGTGATTCCTTCGTTTACTTGGNAAAACAAGNGCAGTACTTCTTTTAAC]
[+] EMBL BX609772             [                       TACCACAAACGAGTGAAAGTATTACCTGTTTGTTCGTGATCGATCGTTTGACT        CGTGTC    TGTGTGTGTGTGTGCAAAACAAACCAAACAAATGTCTGCATTTGCGCAATGGATTAAGCGTTACCCTGTAGTACGAGGCATGATTACGTACAGTTTTCTATGGCCAACGGGATGTTTCATTCAACAAAAACTCTCCGGCAAAAAGCTTGATGAAATCGATTGGAAGAAGTGTTGGCGATTTTTCTTCTACGGTGGATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCGATCATGTGGCCAAACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTATACACCGATGGCAATGACTGCGTTCTACTTCAGCATGAGCCTACTGGAGTCAAAAACTGTGGAGGAGTCACTAAACGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGTCGCACTGTGTATCTGGCCTTTCATACAAACATTCAACTTTTCCGTGGTTCCAGAAAAAAATCGCGTACCTTTCGTCAGTATGTGTAGTCTACTGTGGACCATATTTTTAGCT                                                                                                                                                                                                                ]
[+] EMBL BX614963             [                                                               CGATCGTTTCACT        TGTGTCTGTGTGTGTGTGTGTGTGCAAAACAAACCAAACAAATGTCTGCATTTGCGCAATGGATTAAGCGTTACCCTGTAGTACGAGGCATGATTACGTACAGTTTTCTATGGCCAACGGGATGTTTCATTCAACAAAAACTCTCCGGCAAAAAGCTTGATGAAATCGATTGGAAGAAGTGTTGGCGATTTTTCTTCTACGGTGGATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCGATCATGTGGCCAAACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTATACACCGATGGCAATGACTGCGTTCTACTTCAGCATGAGCCTACTGGAGTCAAAAACTGTGGAGGAGTCACTAAACGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGTCGCACTGTGTATCTGGCCTTTCATACAAACATTCAACTTTTCCGTGGTTCCGGAAAAAAATCGCGTACCTTTCGTCAGTATGTGTAGTCTACTGTGGACCATATTTTTAGCTTACATGAAACAAAAAGAGCAAAAGGAACTCGAAGCCGGTA TTTTCGTAAAATAATGTAATGCTCTGTAATGGCAGGAGCTATTTTACATTATCTCAAATGGTAGATAC AAAGCAATTGCACCGATTC                                                                               ]
[+] EMBL BX627491             [                                                                                                                                             AATGGATTAAGCGTTACCCTGTAGTACGAGGCATGATTACGTACAGTTTTCTATGGCCAACGGGATGTTTCATTCAACAAAAACTCTCCGGCAAAAAGCTTGATGAAATCGATTGGAAGAAGTGTTGGCGATTTTTCTTCTACGGTGGATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCGATCATGTGGCCAAACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTATACACCGATGGCAATGACTGCGTTCTACTTCAGCATGAGCCTACTGGAGTCAAAAACTGTGGAGGAGTCACTAAACGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGTCGCACTGTGTATCTGGCCTTTCATACAAACATTCAACTTTTCCGTGGTTCCGGAAAAAAATCGCGTACCTTTCGTCAGTATGTGTAGTCTACTGTGGACCATATTTTTAGCTTACATGAAACAAAAAGAGCAAAAGGAACTCGAAGCCGGTA TTTTCGTAAAATAATGTAATGCTCTGTAATGGCAGGAGCTATTTTACATTATCTCAAATGGTAGATAC AAAGCAATTGCACCGATTCATACAATGCTGAACGAG                                                              ]
[+] EMBL BX614922             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CAAAAAGAGCAAAAGGAACTCGAAGCCGGTA TTTTCGTAAAATAATGTAATGGTCTGTAATGGCAGGAGCTATTTTAAATTATCTCAAATGGTAGATAC AAAGCAAa                                                                                          ]


>consensus_8328#0 CCGGCGGGAAGTGTGAATAGATGTACCACAAACGAGTGAAAGTATTACCTGTTTGTTCGT GATCGATCGTTTCACTTGTGTCTGTGTGTGTGTGTGTGTGCAAAACAAACCAAACAAATG TCTGCATTTGCGCAATGGATTAAGCGTTACCCTGTAGTACGAGGCATGATTACGTACAGT TTTCTATGGCCAACGGGATGTTTCATTCAACAAAAACTCTCCGGCAAAAAGCTTGATGAA ATCGATTGGAAGAAGTGTTGGCGATTTTTCTTCTACGGTGGATTCATTGTCGCCCCATCG TTGTACTGTTGGATACGGGTAGCCTCGATCATGTGGCCAAACCAAAATCTAAAATCAGCC GTTGCCAAGGCTTTGACGGAGCAAATCAGCTATACACCGATGGCAATGACTGCGTTCTAC TTCAGCATGAGCCTACTGGAGTCAAAAACTGTGGAGGAGTCACTAAACGAAGTACGAGTG AAGCTGTTTCCTACTTACAAGGTCGCACTGTGTATCTGGCCTTTCATACAAACATTCAAC TTTTCCGTGGTTCCGGAAAAAAATCGCGTACCTTTCGTCAGTATGTGTAGTCTACTGTGG ACCATATTTTTAGCTTACATGAAACAAAAAGAGCAAAAGGAACTCGAAGCCGGTATTTTC GTAAAATAATGTAATGCTCTGTAATGGCAGGAGCTATTTTACATTATCTCAAATGGTAGA TACAAAGCAATTGCACCGATTCATACNATGCTGAACGAGGGTCGAGTTAAAGGGTGATTC CTTCGTTTACTTGGNAAAACAAGNGCAGTACTTCTTTTAAC



consensusID : consensus_8328#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence
                              [CCGCGGGAAGTGTGAATAGATGTACCACAAACGAGTGAAAGTATTACCTGTTTGTTCGTGATCGATCGTTTCACTCGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGCAAAACAAACCAAACAAATGTCTGCATTTGCGCAATGGATTAAGCGTTACCCTGTAGTACGAGGCATGATTACGTACAGTTTTCTATGGCCAACGGGATGTTTCATTCAACAAAAACTCTCCGGCAAAAAGCTTGATGAAATCGATTGGAAGAAGTGTTGGCGATTTTTCTTCTACGGTGGATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCGATCATGTGGCCAAACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTATACACCGATGGCAATGACTGCGTTCTACTTCAGCATGAGCCTACTGGAGTCAAAAACTGTGGAGGAGTCACTAAACGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGTGAGCTGAAGATAGGAAGAAAATACATGTTTTAAACATTGTGCTTTTGCATTACAGGTCGCACTGTGTATCTGGCCTTTCATACAAACATTCAACTTTTCCGTGGTTCCAGAAAAAAATCGCGTACCTTTCGTCAGTATGTGTAGTC]

[+] EMBL BM627768             [CCGCGGGAAGTGTGAATAGATGTACCACAAACGAGTGAAAGTATTACCTGTTTGTTCGTGATCGATCGTTTCACTCGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGCAAAACAAACCAAACAAATGTCTGCATTTGCGCAATGGATTAAGCGTTACCCTGTAGTACGAGGCATGATTACGTACAGTTTTCTATGGCCAACGGGATGTTTCATTCAACAAAAACTCTCCGGCAAAAAGCTTGATGAAATCGATTGGAAGAAGTGTTGGCGATTTTTCTTCTACGGTGGATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCGATCATGTGGCCAAACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTATACACCGATGGCAATGACTGCGTTCTACTTCAGCATGAGCCTACTGGAGTCAAAAACTGTGGAGGAGTCACTAAACGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGTGAGCTGAAGATAGGAAGAAAATACATGTTTTAAACATTGTGCTTTTGCATTACAGGTCGCACTGTGTATCTGGCCTTTCATACAAACATTCAACTTTTCCGTGGTTCCAGAAAAAAATCGCGTACCTTTCGTCAGTATGTGTAGTC]


>consensus_8328#1 CCGCGGGAAGTGTGAATAGATGTACCACAAACGAGTGAAAGTATTACCTGTTTGTTCGTG ATCGATCGTTTCACTCGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGCAAAACAAACCAA ACAAATGTCTGCATTTGCGCAATGGATTAAGCGTTACCCTGTAGTACGAGGCATGATTAC GTACAGTTTTCTATGGCCAACGGGATGTTTCATTCAACAAAAACTCTCCGGCAAAAAGCT TGATGAAATCGATTGGAAGAAGTGTTGGCGATTTTTCTTCTACGGTGGATTCATTGTCGC CCCATCGTTGTACTGTTGGATACGGGTAGCCTCGATCATGTGGCCAAACCAAAATCTAAA ATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTATACACCGATGGCAATGACTGC GTTCTACTTCAGCATGAGCCTACTGGAGTCAAAAACTGTGGAGGAGTCACTAAACGAAGT ACGAGTGAAGCTGTTTCCTACTTACAAGGTGAGCTGAAGATAGGAAGAAAATACATGTTT TAAACATTGTGCTTTTGCATTACAGGTCGCACTGTGTATCTGGCCTTTCATACAAACATT CAACTTTTCCGTGGTTCCAGAAAAAAATCGCGTACCTTTCGTCAGTATGTGTAGTC



consensusID : consensus_8328#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence
                              [GAGGCACGAATCGCCACGAGGNTATGAATAGATGTACCACAAACGAGTGAAAGTATTACCTGTTTGTTCGTGATCGATCGTTTCACTTGTGTCTGTGTGTGTGTGTGTGTGCAAAACAAACCAAACAAATGTCTGCATTTGCGCAATGGATTAAGCGTTACCCTGTAGTACGAGGCATGATTACGTACAGTTTTCTATGGCCAACGGGATGTTTCATTCAAGCAAAAACTCTCCGGCAAAAAGCTTGATGAAATCGATTGGAAGAAGTGTTGGCGATTTGGTGCTTCTACGGTGGATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCGGATCATGTGGCCAAACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTATACACCGATGGCAATGACTGCGTTCTACTTCAGGCATGAGCCTACTGGAGTCAAGAGAACTGTGGAGGAGTCACGTAAGAGCGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGTCGCACTGTGTATCTGGGGCCTTGTCAGTACAAAACATGTGCGAAGCTNTAGGGGCCGTGGGTTCCGGANAAAGAAATCGCGTACCGTTTGACGTCAGGATGTAGTANGTACGTACGTA]

[+] EMBL BX468015             [GAGGCACGAATCGCCACGAGGNTATGAATAGATGTACCACAAACGAGTGAAAGTATTACCTGTTTGTTCGTGATCGATCGTTTCACTTGTGTCTGTGTGTGTGTGTGTGTGCAAAACAAACCAAACAAATGTCTGCATTTGCGCAATGGATTAAGCGTTACCCTGTAGTACGAGGCATGATTACGTACAGTTTTCTATGGCCAACGGGATGTTTCATTCAAGCAAAAACTCTCCGGCAAAAAGCTTGATGAAATCGATTGGAAGAAGTGTTGGCGATTTGGTGCTTCTACGGTGGATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCGGATCATGTGGCCAAACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTATACACCGATGGCAATGACTGCGTTCTACTTCAGGCATGAGCCTACTGGAGTCAAGAGAACTGTGGAGGAGTCACGTAAGAGCGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGTCGCACTGTGTATCTGGGGCCTTGTCAGTACAAAACATGTGCGAAGCTNTAGGGGCCGTGGGTTCCGGANAAAGAAATCGCGTACCGTTTGACGTCAGGATGTAGTANGTACGTACGTA]


>consensus_8328#2 GAGGCACGAATCGCCACGAGGNTATGAATAGATGTACCACAAACGAGTGAAAGTATTACC TGTTTGTTCGTGATCGATCGTTTCACTTGTGTCTGTGTGTGTGTGTGTGTGCAAAACAAA CCAAACAAATGTCTGCATTTGCGCAATGGATTAAGCGTTACCCTGTAGTACGAGGCATGA TTACGTACAGTTTTCTATGGCCAACGGGATGTTTCATTCAAGCAAAAACTCTCCGGCAAA AAGCTTGATGAAATCGATTGGAAGAAGTGTTGGCGATTTGGTGCTTCTACGGTGGATTCA TTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCGGATCATGTGGCCAAACCAA AATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTATACACCGATGGCA ATGACTGCGTTCTACTTCAGGCATGAGCCTACTGGAGTCAAGAGAACTGTGGAGGAGTCA CGTAAGAGCGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGTCGCACTGTGTATCTGG GGCCTTGTCAGTACAAAACATGTGCGAAGCTNTAGGGGCCGTGGGTTCCGGANAAAGAAA TCGCGTACCGTTTGACGTCAGGATGTAGTANGTACGTACGTA



consensusID : consensus_8328#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGTAGATGTACCACAAACGAGTGAAAGTATTACCAATTTGTTCGTGATCGCTCGTTTCACTCGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAAAACAAACCAAACAAATGTCTGCATTTGCGCAATGGATTAAGCGTTACCCTGTAGTACGAGGCATGATTACGTACAGTTTTCTATGGCCAACGGGATGTTTCATTCAACAAAAACTCTCCGGCAAAAAGCTTGATGAAATCGATTGGAAGAAGTGTTGGCGATTTTTCTTCTACGGTGGATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCGATCATGTGGCCAAACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTATACACCAATGGCAATGACTGCGTTCTACTTCAGCATGAGCCTACTGGAGTCAAAAACTGTGGAGGAGTCACTAAACGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGTCGCACTGTGTATCTGGCCTTTCATACAAACATTCAACTTTTCCGTGGTTCCAGAAAAA]

[+] EMBL BM633737             [CCGCCCACGCGTCCGCCCACGCGTCCGTAGATGTACCACAAACGAGTGAAAGTATTACCAATTTGTTCGTGATCGCTCGTTTCACTCGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAAAACAAACCAAACAAATGTCTGCATTTGCGCAATGGATTAAGCGTTACCCTGTAGTACGAGGCATGATTACGTACAGTTTTCTATGGCCAACGGGATGTTTCATTCAACAAAAACTCTCCGGCAAAAAGCTTGATGAAATCGATTGGAAGAAGTGTTGGCGATTTTTCTTCTACGGTGGATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCGATCATGTGGCCAAACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTATACACCAATGGCAATGACTGCGTTCTACTTCAGCATGAGCCTACTGGAGTCAAAAACTGTGGAGGAGTCACTAAACGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGTCGCACTGTGTATCTGGCCTTTCATACAAACATTCAACTTTTCCGTGGTTCCAGAAAAA]


>consensus_8328#3 CCGCCCACGCGTCCGCCCACGCGTCCGTAGATGTACCACAAACGAGTGAAAGTATTACCA ATTTGTTCGTGATCGCTCGTTTCACTCGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTG CAAAACAAACCAAACAAATGTCTGCATTTGCGCAATGGATTAAGCGTTACCCTGTAGTAC GAGGCATGATTACGTACAGTTTTCTATGGCCAACGGGATGTTTCATTCAACAAAAACTCT CCGGCAAAAAGCTTGATGAAATCGATTGGAAGAAGTGTTGGCGATTTTTCTTCTACGGTG GATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCGATCATGTGGCCAA ACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTATACACCAA TGGCAATGACTGCGTTCTACTTCAGCATGAGCCTACTGGAGTCAAAAACTGTGGAGGAGT CACTAAACGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGTCGCACTGTGTATCTGGC CTTTCATACAAACATTCAACTTTTCCGTGGTTCCAGAAAAA



consensusID : consensus_8328#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence
                              [GCAGAATCGCCCCGAGGTTATTGGAAGAAGTGTTGGCGATCNTTTTTTCTACGGTGTGATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCGATCATGTGGCCAAACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTATACACCGATGGCAATGACTGCGTTCTACTTCAGCATGAGCCTACTGGAGTCAAAAACTGTGGAGGAGTCACTAAACGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGTCGCACTGTGTATCTGGCCTTTCATACAAACATTCAACTTTTCCGTGGTTCCAGAAAAAAATCGCGTACCTTTCGTCAGTATGTGTAGTCTACTGTGGACCATATTTTTAGCTTACATGAAACAAAAAGAGCAAAAGGAACTCGAAGCCG]

[+] EMBL AL696966             [GCAGAATCGCCCCGAGGTTATTGGAAGAAGTGTTGGCGATCNTTTTTTCTACGGTGTGATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCGATCATGTGGCCAAACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTATACACCGATGGCAATGACTGCGTTCTACTTCAGCATGAGCCTACTGGAGTCAAAAACTGTGGAGGAGTCACTAAACGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGTCGCACTGTGTATCTGGCCTTTCATACAAACATTCAACTTTTCCGTGGTTCCAGAAAAAAATCGCGTACCTTTCGTCAGTATGTGTAGTCTACTGTGGACCATATTTTTAGCTTACATGAAACAAAAAGAGCAAAAGGAACTCGAAGCCG]


>consensus_8328#4 GCAGAATCGCCCCGAGGTTATTGGAAGAAGTGTTGGCGATCNTTTTTTCTACGGTGTGAT TCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCGATCATGTGGCCAAACC AAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTATACACCGATGG CAATGACTGCGTTCTACTTCAGCATGAGCCTACTGGAGTCAAAAACTGTGGAGGAGTCAC TAAACGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGTCGCACTGTGTATCTGGCCTT TCATACAAACATTCAACTTTTCCGTGGTTCCAGAAAAAAATCGCGTACCTTTCGTCAGTA TGTGTAGTCTACTGTGGACCATATTTTTAGCTTACATGAAACAAAAAGAGCAAAAGGAAC TCGAAGCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8328#1      -------------CCGCGGGAAGTGTGAATAGATGTACCACAAACGAGTGAAAGTATTAC 47
consensus_8328#3      -CCGCCCACGCGTCCGCCC-ACGCGTCCGTAGATGTACCACAAACGAGTGAAAGTATTAC 58
consensus_8328#2      GAGGCACGAATCGCCACGA-GGNTATGAATAGATGTACCACAAACGAGTGAAAGTATTAC 59
consensus_8328#0      ------------CCGGCGGGAAGTGTGAATAGATGTACCACAAACGAGTGAAAGTATTAC 48
consensus_8328#4      ------------------------------------------------------------
                                                                                  

consensus_8328#1      CTGTTTGTTCGTGATCGATCGTTTCACTCGTGTCTGTGTGTGTGTGTGTGTGTGTGTGT- 106
consensus_8328#3      CAATTTGTTCGTGATCGCTCGTTTCACTCGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTG 118
consensus_8328#2      CTGTTTGTTCGTGATCGATCGTTTCACTTGTGTCTGTGTGTGTGTGTGTGTG-------- 111
consensus_8328#0      CTGTTTGTTCGTGATCGATCGTTTCACTTGTGTCTGTGTGTGTGTGTGTGTG-------- 100
consensus_8328#4      ------------------------------------------------------------
                                                                                  

consensus_8328#1      -GCAAAACAAACCAAACAAATGTCTGCATTTGCGCAATGGATTAAGCGTTACCCTGTAGT 165
consensus_8328#3      TGCAAAACAAACCAAACAAATGTCTGCATTTGCGCAATGGATTAAGCGTTACCCTGTAGT 178
consensus_8328#2      --CAAAACAAACCAAACAAATGTCTGCATTTGCGCAATGGATTAAGCGTTACCCTGTAGT 169
consensus_8328#0      --CAAAACAAACCAAACAAATGTCTGCATTTGCGCAATGGATTAAGCGTTACCCTGTAGT 158
consensus_8328#4      ------------------------------------------------------------
                                                                                  

consensus_8328#1      ACGAGGCATGATTACGTACAGTTTTCTATGGCCAACGGGATGTTTCATTCAA-CAAAAAC 224
consensus_8328#3      ACGAGGCATGATTACGTACAGTTTTCTATGGCCAACGGGATGTTTCATTCAA-CAAAAAC 237
consensus_8328#2      ACGAGGCATGATTACGTACAGTTTTCTATGGCCAACGGGATGTTTCATTCAAGCAAAAAC 229
consensus_8328#0      ACGAGGCATGATTACGTACAGTTTTCTATGGCCAACGGGATGTTTCATTCAA-CAAAAAC 217
consensus_8328#4      ------------------------------------------------------------
                                                                                  

consensus_8328#1      TCTCCGGCAAAAAGCTTGATGAAATCGATTGGAAGAAGTGTTGGCGATTT--TTCTTCTA 282
consensus_8328#3      TCTCCGGCAAAAAGCTTGATGAAATCGATTGGAAGAAGTGTTGGCGATTT--TTCTTCTA 295
consensus_8328#2      TCTCCGGCAAAAAGCTTGATGAAATCGATTGGAAGAAGTGTTGGCGATTTGGTGCTTCTA 289
consensus_8328#0      TCTCCGGCAAAAAGCTTGATGAAATCGATTGGAAGAAGTGTTGGCGATTT--TTCTTCTA 275
consensus_8328#4      ------GCAGAAT-CGCCCCGAGGTT-ATTGGAAGAAGTGTTGGCGATCNT-TTTTTCTA 51
                            *** **  *     **  *  *********************    *  *****

consensus_8328#1      CGGTG-GATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCG-ATCATG 340
consensus_8328#3      CGGTG-GATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCG-ATCATG 353
consensus_8328#2      CGGTG-GATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCGGATCATG 348
consensus_8328#0      CGGTG-GATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCG-ATCATG 333
consensus_8328#4      CGGTGTGATTCATTGTCGCCCCATCGTTGTACTGTTGGATACGGGTAGCCTCG-ATCATG 110
                      ***** *********************************************** ******

consensus_8328#1      TGGCCAAACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTAT 400
consensus_8328#3      TGGCCAAACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTAT 413
consensus_8328#2      TGGCCAAACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTAT 408
consensus_8328#0      TGGCCAAACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTAT 393
consensus_8328#4      TGGCCAAACCAAAATCTAAAATCAGCCGTTGCCAAGGCTTTGACGGAGCAAATCAGCTAT 170
                      ************************************************************

consensus_8328#1      ACACCGATGGCAATGACTGCGTTCTACTTCAG-CATGAGCCTACTGGAGTCAAAA--ACT 457
consensus_8328#3      ACACCAATGGCAATGACTGCGTTCTACTTCAG-CATGAGCCTACTGGAGTCAAAA--ACT 470
consensus_8328#2      ACACCGATGGCAATGACTGCGTTCTACTTCAGGCATGAGCCTACTGGAGTCAAGAGAACT 468
consensus_8328#0      ACACCGATGGCAATGACTGCGTTCTACTTCAG-CATGAGCCTACTGGAGTCAAAA--ACT 450
consensus_8328#4      ACACCGATGGCAATGACTGCGTTCTACTTCAG-CATGAGCCTACTGGAGTCAAAA--ACT 227
                      ***** ************************** ******************** *  ***

consensus_8328#1      GTGGAGGAGTCACTAAA---CGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGTGAGC 514
consensus_8328#3      GTGGAGGAGTCACTAAA---CGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGT---- 523
consensus_8328#2      GTGGAGGAGTCACGTAAGAGCGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGT---- 524
consensus_8328#0      GTGGAGGAGTCACTAAA---CGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGT---- 503
consensus_8328#4      GTGGAGGAGTCACTAAA---CGAAGTACGAGTGAAGCTGTTTCCTACTTACAAGGT---- 280
                      *************  **   ************************************    

consensus_8328#1      TGAAGATAGGAAGAAAATACATGTTTTAAACATTGTGCTTTTGCATTACAGGTCGCACTG 574
consensus_8328#3      -----------------------------------------------------CGCACTG 530
consensus_8328#2      -----------------------------------------------------CGCACTG 531
consensus_8328#0      -----------------------------------------------------CGCACTG 510
consensus_8328#4      -----------------------------------------------------CGCACTG 287
                                                                           *******

consensus_8328#1      TGTATCTGG---CCTTTCA-TACAAA-CATTC---AACTTTT-----CCGTGGTTCC--- 618
consensus_8328#3      TGTATCTGG---CCTTTCA-TACAAA-CATTC---AACTTTT-----CCGTGGTTCC--- 574
consensus_8328#2      TGTATCTGGGGCCTTGTCAGTACAAAACATGTGCGAAGCTNTAGGGGCCGTGGGTTCCGG 591
consensus_8328#0      TGTATCTGG---CCTTTCA-TACAAA-CATTC---AACTTTT-----CCGTGGTTCC--- 554
consensus_8328#4      TGTATCTGG---CCTTTCA-TACAAA-CATTC---AACTTTT-----CCGTGGTTCC--- 331
                      *********   * * *** ****** ***     **  * *     ****** * *   

consensus_8328#1      AGAAAAAAATCGCGTACCTTTCGTCAGTATG-TGTAGTC--------------------- 656
consensus_8328#3      AGAAAAA----------------------------------------------------- 581
consensus_8328#2      ANAAAGAAATCGCGTACCGTTTGACGTCAGGATGTAGTANGTACGTACGTA--------- 642
consensus_8328#0      GGAAAAAAATCGCGTACCTTTCGTCAGTATG-TGTAGTCTACTGTGGACCATATTTTTAG 613
consensus_8328#4      AGAAAAAAATCGCGTACCTTTCGTCAGTATG-TGTAGTCTACTGTGGACCATATTTTTAG 390
                        *** *                                                     

consensus_8328#1      ------------------------------------------------------------
consensus_8328#3      ------------------------------------------------------------
consensus_8328#2      ------------------------------------------------------------
consensus_8328#0      CTTACATGAAACAAAAAGAGCAAAAGGAACTCGAAGCCGGTATTTTCGTAAAATAATGTA 673
consensus_8328#4      CTTACATGAAACAAAAAGAGCAAAAGGAACTCGAAGCCG--------------------- 429
                                                                                  

consensus_8328#1      ------------------------------------------------------------
consensus_8328#3      ------------------------------------------------------------
consensus_8328#2      ------------------------------------------------------------
consensus_8328#0      ATGCTCTGTAATGGCAGGAGCTATTTTACATTATCTCAAATGGTAGATACAAAGCAATTG 733
consensus_8328#4      ------------------------------------------------------------
                                                                                  

consensus_8328#1      ------------------------------------------------------------
consensus_8328#3      ------------------------------------------------------------
consensus_8328#2      ------------------------------------------------------------
consensus_8328#0      CACCGATTCATACNATGCTGAACGAGGGTCGAGTTAAAGGGTGATTCCTTCGTTTACTTG 793
consensus_8328#4      ------------------------------------------------------------
                                                                                  

consensus_8328#1      ----------------------------
consensus_8328#3      ----------------------------
consensus_8328#2      ----------------------------
consensus_8328#0      GNAAAACAAGNGCAGTACTTCTTTTAAC 821
consensus_8328#4      ----------------------------
                                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)