These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_841#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 713 fasta sequence [CCGCGCTAGCAAAATTTCTCCTTTTGTTTTAGTTTTAATTAACAATCCAGATTTATACATAAATCTTATTTTCAGCTAAAACATTAGTGTACCACGATGGAACATCTCGTTTCTCTCGGTCTAAATGAGCAAAAAATCAAGGAAACGCTTAAAAACGCAACCCTTACTAGCACAATTACACGTGCCTTCTCTTACGTCCCGCCGGGTGTGGAGTTAAGTTCAGCACAAAAACCGCTTATATTTCAGGCATGCTCAAAGATAAAACCGCAGACGGCTCACCATTTGGAACTTATAGTGAGAAAAATTTTGGATAACAGTTTGGACACTAGTCTACGTGTTGACACCGCACTGGAATATGTTCTGGCTAACGTGACGAAAGCCACTATCGACGAAGCTACTTTCGATGCGGCTTGCGGTGTGGGAGTAGTTGTGACACCGGAAGAAATCGAGCGGGCGGTTGAAATAACCGTTGCCAAATATCGTAGCGATATCGTCGACCAACGTTATCGTTTTAATGTCGGAAAATTGTTGAGCGAAATTCGAAGTGCTTTGCCATGGGTGGATGGTAAAGCCCTTAAAAGTGAGGTGGATGTGCAAATGTTTGATTTACTTGGCCCCAAAACGGATGCCGATGGCGAGAAAGTGGGTAAAAAACGTCGGGAAACCCCAGCCTCAGATACTGCACCCAAAGCAACCTCTGTCGTTGAACCATC] [+] EMBL BM652331 [CCGCGCTAGCAAAATTTCTCCTTTTGTTTTAGTTTTAATTAACAATCCAGATTTATACATAAATCTTATTTTCAGCTAAAACATTAGTGTACCACGATGGAACATCTCGTTTCTCTCGGTCTAAATGAGCAAAAAATCAAGGAAACGCTTAAAAACGCAACCCTTACTAGCACAATTACACGTGCCTTCTCTTACGTCCCGCCGGGTGTGGAGTTAAGTTCAGCACAAAAACCGCTTATATTTCAGGCATGCTCAAAGATAAAACCGCAGACGGCTCACCATTTGGAACTTATAGTGAGAAAAATTTTGGATAACAGTTTGGACACTAGTCTACGTGTTGACACCGCACTGGAATATGTTCTGGCTAACGTGACGAAAGCCACTATCGACGAAGCTACTTTCGATGCGGCTTGCGGTGTGGGAGTAGTTGTGACACCGGAAGAAATCGAGCGGGCGGTTGAAATAACCGTTGCCAAATATCGTAGCGATATCGTCGACCAACGTTATCGTTTTAATGTCGGAAAATTGTTGAGCGAAATTCGAAGTGCTTTGCCATGGGTGGATGGTAAAGCCCTTAAAAGTGAGGTGGATGTGCAAATGTTTGATTTACTTGGCCCCAAAACGGATGCCGATGGCGAGAAAGTGGGTAAAAAACGTCGGGAAACCCCAGCCTCAGATACTGCACCCAAAGCAACCTCTGTCGTTGAACCATC] consensusID : consensus_841#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [CCGACCGAAGAGCTAAAACATTAGTGTACCACGATGGAACATCTCGTTTCTCTCGGGCTAAATGAGCAAAAAATCAAGGAAACGCTTAAAAACGCTACCCTTACTAGCACAATTACACGTGCCTTCTCTTACGTCCCGCCGGGTGTGGAGTTAAGTTCAGCACAAAAACCGCTGATATTTCAGGCATGCTCAAAGATAAAACCGCAGACGGCTCACCATTTGGAACTTATAGTAAGAAAAATTTTGGATAACAGTTTGGACACTAGTCTACGTGTTGACACCGCACTGGAATATGTTCTGGCTAACGTGACGAAAGCCACTATCGACCAAGCTACTTTCGATGCGGCTTGCGGTGTGGGAGTAATTGTGACACCGGAAGAAATCGAGCGGGCGGTTGAAATAACCGTTGCCAAATATCGTAGCGATATCGTCGACCAACGTTATCGTTTTAATGTCGGAAAATTGTTGAGCGAAATTCGAAGT] [+] EMBL BM616904 [CCGACCGAAGAGCTAAAACATTAGTGTACCACGATGGAACATCTCGTTTCTCTCGGGCTAAATGAGCAAAAAATCAAGGAAACGCTTAAAAACGCTACCCTTACTAGCACAATTACACGTGCCTTCTCTTACGTCCCGCCGGGTGTGGAGTTAAGTTCAGCACAAAAACCGCTGATATTTCAGGCATGCTCAAAGATAAAACCGCAGACGGCTCACCATTTGGAACTTATAGTAAGAAAAATTTTGGATAACAGTTTGGACACTAGTCTACGTGTTGACACCGCACTGGAATATGTTCTGGCTAACGTGACGAAAGCCACTATCGACCAAGCTACTTTCGATGCGGCTTGCGGTGTGGGAGTAATTGTGACACCGGAAGAAATCGAGCGGGCGGTTGAAATAACCGTTGCCAAATATCGTAGCGATATCGTCGACCAACGTTATCGTTTTAATGTCGGAAAATTGTTGAGCGAAATTCGAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_841#0 CCGCGCTAGCAAAATTTCTCCTTTTGTTTTAGTTTTAATTAACAATCCAGATTTATACAT 60 consensus_841#1 ------------------------------------------------------------ consensus_841#0 AAATCTTATTTTCAGCTAAAACATTAGTGTACCACGATGGAACATCTCGTTTCTCTCGGT 120 consensus_841#1 ---CCGACCGAAGAGCTAAAACATTAGTGTACCACGATGGAACATCTCGTTTCTCTCGGG 57 * ********************************************** consensus_841#0 CTAAATGAGCAAAAAATCAAGGAAACGCTTAAAAACGCAACCCTTACTAGCACAATTACA 180 consensus_841#1 CTAAATGAGCAAAAAATCAAGGAAACGCTTAAAAACGCTACCCTTACTAGCACAATTACA 117 ************************************** ********************* consensus_841#0 CGTGCCTTCTCTTACGTCCCGCCGGGTGTGGAGTTAAGTTCAGCACAAAAACCGCTTATA 240 consensus_841#1 CGTGCCTTCTCTTACGTCCCGCCGGGTGTGGAGTTAAGTTCAGCACAAAAACCGCTGATA 177 ******************************************************** *** consensus_841#0 TTTCAGGCATGCTCAAAGATAAAACCGCAGACGGCTCACCATTTGGAACTTATAGTGAGA 300 consensus_841#1 TTTCAGGCATGCTCAAAGATAAAACCGCAGACGGCTCACCATTTGGAACTTATAGTAAGA 237 ******************************************************** *** consensus_841#0 AAAATTTTGGATAACAGTTTGGACACTAGTCTACGTGTTGACACCGCACTGGAATATGTT 360 consensus_841#1 AAAATTTTGGATAACAGTTTGGACACTAGTCTACGTGTTGACACCGCACTGGAATATGTT 297 ************************************************************ consensus_841#0 CTGGCTAACGTGACGAAAGCCACTATCGACGAAGCTACTTTCGATGCGGCTTGCGGTGTG 420 consensus_841#1 CTGGCTAACGTGACGAAAGCCACTATCGACCAAGCTACTTTCGATGCGGCTTGCGGTGTG 357 ****************************** ***************************** consensus_841#0 GGAGTAGTTGTGACACCGGAAGAAATCGAGCGGGCGGTTGAAATAACCGTTGCCAAATAT 480 consensus_841#1 GGAGTAATTGTGACACCGGAAGAAATCGAGCGGGCGGTTGAAATAACCGTTGCCAAATAT 417 ****** ***************************************************** consensus_841#0 CGTAGCGATATCGTCGACCAACGTTATCGTTTTAATGTCGGAAAATTGTTGAGCGAAATT 540 consensus_841#1 CGTAGCGATATCGTCGACCAACGTTATCGTTTTAATGTCGGAAAATTGTTGAGCGAAATT 477 ************************************************************ consensus_841#0 CGAAGTGCTTTGCCATGGGTGGATGGTAAAGCCCTTAAAAGTGAGGTGGATGTGCAAATG 600 consensus_841#1 CGAAGT------------------------------------------------------ 483 ****** consensus_841#0 TTTGATTTACTTGGCCCCAAAACGGATGCCGATGGCGAGAAAGTGGGTAAAAAACGTCGG 660 consensus_841#1 ------------------------------------------------------------ consensus_841#0 GAAACCCCAGCCTCAGATACTGCACCCAAAGCAACCTCTGTCGTTGAACCATC 713 consensus_841#1 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||