These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8426#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1197 fasta sequence [GCAAGAATTCCGCACGATGGTCGACGACGACGGGTCAGCCAAGCCCGGACGCACTAAACAATCGTTTTCTGTGTGTTTTATGTCCTTTTTAACCCGAT--CCTTCCATCGGCTGTCCAGAATGTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCG-GCCGAGATCAAGCAGTGGCTCGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCCGCTGCCCGGGGCGCCCGAGGTGATAAATCGTTTCATCGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCG-ACGAAAACGCGCCCGGAATTTGT-GGAGAAAGCGGTCAAGCTTGGCTTTAACGTGACTATCGACAACATCATATCGACTGCGTACCTGGCGGCACAGTACCTGAAGAGTGTGGGCTTCTCCAAGACCGTGTACACGATCGGTTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGCGGACACTGTCGCC-AGCTTTGTGCCCGATCCGGACGTCAGTGCCG-TGATCGTTGGGTTCGATGAA-CACTTTA-GCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTG-AACAATCCGGACGTTATATTCATTGGCACGAACA-CGGATGAGCGGTTCCCGATGCCGGACCGGGTTATACCCGGCACGGGCAGTATCGTGCAGGCGATGGTGACCTGCTCCGAGCGGGAACCGATCGTGAT-GGGCAAACCGAACCCACACATCTGCGAGATTATCCGCCGGGAGTACGATGTGGATCCGGCCCGTACGCTCA-TGATTGGCGATCGGTGC-AATACGGACATTTTGCTGGGGAAGAATTGTGACTTCCAGACGCTGCTGGTCGAAACGGGTATACACAA-GGCGGAGGATATAGCAAAGTACGGACAGTCGGAGGATCCGGCGGTGAGGGAACTGGTGCCGGATGTGTATCTACCTAAGCTGGGTGACTAACTGCCGTATCTATGATGAGAGGGGGATGGCTGAGAGGTGCTTGTAAATGCTGTAAGATTGTTTCAGCATGAGATGGTGCGAAAGTGTAACCGTTGTTTTAAACAATTGGTTTGTGAGAGTGTTG-AAAAAAATACCTCAATAAATGTGCGC-TTAAACAAAATAGGTAACAATAA] [+] EMBL BX468270 [GCAAGAATTCCGCACGATGGTCGACGACGACGGGTCAGCCAAGCCCGGACGCACTAAACAATCGTTTTCTGTGTGTTTTATGTCCTTTTTAACCCGAT CCTTCCATCGGCTGTCCAGAATGTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCG GCCGAGATCAAGCAGTGGCTCGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCCGCTGCCCGGGGCGCCCGAGGTGATAAATCGTTTCATCGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCG ACGAAAACGCGCCCGGAATTTGT GGAGAAAGCGGTCAAGCTTTGCTTTAATGTCACTATCGACAACATCATATCGACTGCGTACCTGGCGGCACAGTACCTGAAGAGTGTGGGCTTCTCCAAGACCGTGTACACGATCGGTTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGCGGACACTGTCGCCAAGCTTTGTGCCCGATCCGGACGTCAGTGCCG TGATCGTTGGGTTCGATGAAGCACTTTAGGCTTCGTCAAGATGATGAA ] [+] EMBL BM644224 [ ccgCAAGCCCGGACGCACTAAACAATCGTTTTCTGTGTGTTTTATGTCCTTTTTAACCCGAT CCTTCCATCGGCTGTCCAGAATGTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCG GCCGAGATCAAGCAGTGGCTCGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCCGCTGCCCTGGGCGCCCGAGGTGATAAATCGTTTCATCGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCG ACGAAAACGCGCCCGGAATTTGT GGAGAAAGCGGTCAAGCTTGGCTTTAATGTCACTATCGACAACATCATATCGACTGCGTACCTGGCGGCACAGTACCTGAAGAGTGTGGGCTTCTCCAAGACCGTGTACACGATCGGTTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGCGGACACTGTCGCC AGCTTTGTGCCCGATCCGGACGTCAGTGCCGATGATCGTTGGGTTCGATGAG CACTTTA GCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTGAAACAATCCGGACGTTATATTCATTGGCACGAACACCGGATGAGCGGTTCCCGATGCCGGACCGGGTTA ] [+] EMBL BX628293 [ CCGGACGCACTAAACAATCGTTTTCTGTGTGTTTTATGTCCTTTTTAACCCGAT CCTTCCATCGGCTGTCCAGAATGTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCG GCCGAGATCAAGCAGTGGCTCGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCCGCTGCCCGGGGCGCCCGAGGTGATAAATCGTTTCATCGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCG ACGAAAACGCGCCCGGAATTTGT GGAGAAAGCGGTCAAGCTTGGCTTTAATGTCACTATCGACAACATCATATCGACTGCGTACCTGGCGGCACAGTACCTGAAGAGTGTGGGCTTCTCCAAGACCGTGTACACGATCGGTTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGCGGACACTGTCGCC AGCTTTGTGCCCGATCCGGACGTCAGTGCCG TGATCGTTGGGTTCGATGAG CACTTTA GCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTG AACAATCCGGACGTTATATTCATTGGCACGAACA CGGATGAGCGGTTCCCGATGCCGGACCGGGTTATACCCGGCACGGGCAGTATCGTGCAGGCGATGGTGACTTGCTCCGAGCGGGAACCGATCG ] [+] EMBL CNS09AUP [ CCGGACG AATAAACAATCGCTTTCTGTGTGTTTTATGTCCTTTTTAACCCTTTTAGCTTCCATCGACTGTCCAGAATGTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCGCGCCGAGATCAAGCAGTGGCTCGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACGACCCGCTGCCCGGGGCGCCCGAGGTGATAAATCGTTTCATCGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCGTACGAAAACGCGCCCGGAATTTGTGGGAGAAAGCGGTCAAGCTTGGCTTTAACGTGACTATCGACAACATCATATCGACTGCGTACCTGGCAGCACAGTACCTGAAGAGTGTGGGCTTCTCCAAGACCGTGTACACGATCGGTTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCA ] [+] EMBL BX620187 [ TTCTGTGTGTTTTATGTCCTTTTTAACCCGAT CCTTCCATCGGCTGTCCAGAATGTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCG GCCGAGATCAAGCAGTGGCTCGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCCGCTGCCTGGGGCGCCCGAGGTGATAAATCGTTTCATTGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCG ACGAAAACGCGCCCGGAATTTGT GGAGAAAGCGGTCAAGCTTGGCTTTAACGTGACTATCGACAACATCATATCGACTGCGTACCTGGCGGCACAGTACCTGAAGAGTGTGGGCTTCTCCAAGACCGTGTACACGATCGGTTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGCGGACACTGTCGCC AGCTTTGTGCCCGATCCGGACGTCGGTGCCG TGATCGTTGGGTTCGATGAA CACTTTA GCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTG AACAATCCGGACGTTATATTCATTGGCACGAACA CGGATGAGCGGT ] [+] EMBL BX628012 [ GCTGTCCAGAATGTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCG GCCGAGATCAAGCAGTGGCTCGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCCGCTGCCTGGGGCGCCCGAGGTGATAAATCGTTTCATTGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCG ACGAAAACGCGCCCGGAATTTGT GGAGAAAGCGGTCAAGCTTGGCTTTAACGTGACTATCGACAACATCATATCGACTGCGTACCTGGCGGCACAGTACCTGAAGAGTGTGGGCTTCTCCAAGACCGTGTACACGATCGGTTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGCGGACACTGTCGCC AGCTTTGTGCCCGATCCGGACGTCGGTGCCG TGATCGTTGGGTTCGATGAA CACTTTA GCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTG AACAATCCGGACGTTATATTCATTGGCACGAACA CGGATGAGCGGTTCCCGATGCCGGACCGGGTTATACCCGGCACGGGCAGTATCGTGCANGCGATGGTGACCTGCTCCGAGCGGGAACCGATCGTGATGGGGCAAACCGAANCCACACATCTGCGANATTATCCGCCGGGAGTACGATGTGGATCCGGCCCGTACGCTCA T ] [+] EMBL BX616959 [ CGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCCGCTGCCTGGGGCGCCCGAGGTGATAAATCGTTTCATTGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCG ACGAAAACGCGCCCGGAATTTGT GGAGAAAGCGGTCAAGCTTGGCTTTAACGTGACTATCGACAACATCATATCGACTGCGTACCTGGCGGCACAGTACCTGAAGAGTGTGGGCTTCTCCAAGACCGTGTACACGATCGGTTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGCGGACACTGTCGCC AGCTTTGTGCCCGATCCGGACGTCGGTGCCG TGATCGTTGGGTTCGATGAA CACTTTA GCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTG AACAATCCGGACGTTATATTCATTGGCACGAACA CGGATGAGCGGTTCCCGATGCCGGACCGGGTTATACCCGGCACGGGCAGTATCGTGCAGGCGATGGTGACCTGCTCCGAGCGGGAACCGATCGTGAT GGGCAAACCGAACCCACACATCTGCGAGATTATCCGCCGGGAGTACGATGTGGATCCGGCCCGTACGCTCA TGATTGGCGATCGGTGC AATACGGACATTTTGCTGGGGAAGAATTGTGACTTCCAGACGCTGCTGGTCGAAACGGGTATACACAAGGGCGGAGGATATAGCTAAG ] [-] EMBL CNS09DGM [ TCCGGACGTTAGTGCCG TGATCGTTGGGTTCGATGAG CACTTTA GCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTG AACAATCCGGACGTTATATTAATTGGCACGAACA CGGATGAGCGGTTCCCGATGCCGGACCGGGTTATACCCGGCACGGGCAGTATCGTGCAGGCGATGGTTACTTGCTCCGAGCGGGAACCGATCGTAAT GGGCAAACCGAACCCAGACATCTGCGAGTTCATACGCCGGGAGTACGATGTGGATCCTGCCCGTACGCTCA TTATTGGGGATCGGTGCAAATACGGACATTTTGCTGGGGAAGAATTGTGACTTCCAGACGCTGCTGGTCGAAACGGGTATACACAA GGCGGAGGATATAGCAAAGTACGGACAGTCGGAGGATCCGGCGGTGAGGGAACTGGTGCCGGATGTGTATCTACCTAAGCTGGGTGACTAACTGCCGTATCTATGATGAGAGGGGGATGGCTGAGAGGTGCTTGTAAATGCTGTAAGATTGTTTCAGCATGAGATGGTGCGAAAGTGTAACCGTTGTTTTAAACAATTGGTTTGTGAGAGTGTTG AAAAAAATACCTCAATAAATGTGCGC TTAAACAAAATA ] [-] EMBL CNS09AUQ [ TATTCATTGGCACGAACA CGGACGAGC GTTCCCGATGCCGGACCGGGTTATACCCGGCACGGGCAGTATCGTGCAGGCGATGGTGACCTGCTCCGAGCGGGAACCGATTGTGAT GGGCAAACCGAACCCACACATCTGCGAGATTATCCGCCGGGAGTACGATGTGGATCCGGCCCGTACGCTCATTGATTGGCGATCGGTGC AATACGGACATTTTGCTGGGGAAGAATTGTGACTTCCAGACGCTGCTGGTCGAAACGGGTATACACAA GGCGGAGGATATAGCAAAGTACGGACAGTCGGAGGATCCGGCGGTGAGGGCACTGGTGCCGGATGTGTATCTACCTAAGCTGGGTGACTTACTGCCGTATCTGTGATGAGTGGGGGATGGCTGAGAGGTGCTTGTAAGTGCTGTAAGATTGTTTCAGCATGAGATGGTGCGAAAGTGTAACCGTTGTTTTAAACAATTGGTTCGTGAGAGTGTTGAAAAAAAATACCTCAATAAATGTGCGCTTTTGGCAAAATGGGTAACAATAA] consensusID : consensus_8426#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence [CTGGGTGACTTTACGGGTAGCAAGCCGGACGCACTAAACAATCGTTTTCTGTGTGTTTTATGTCCTTTTTAACCCGATCCTTCCATCGGCTGTCCAGAATGTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCGGCCGAGATCAAGCAGTGGCTCGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCCGCTGCCCGGGGCGCCCGAGGTGATAATCGTTTCATCGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGCGGACACTGTCGCCCCCTTTGTGCCCGATCCGGACGTCAGTACCGTGATCGTTGGGTTCGATGAGCACTTTAGCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTGAACAATCCGGACGTTATATTCATTGGCACGAACACGGATGAGCGGTTCCCGATGCCGGACCGGGTTATACCCGGCACGGCGAGTATCGTGCAGGCGATGGTGACTTGCTCCGAGCGGGAACCGATCGTGATGGGCAAACCGAACCCACACATCTGCGAGATCATACGCC] [+] EMBL CNS09DGL [CTGGGTGACTTTACGGGTAGCAAGCCGGACGCACTAAACAATCGTTTTCTGTGTGTTTTATGTCCTTTTTAACCCGATCCTTCCATCGGCTGTCCAGAATGTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCGGCCGAGATCAAGCAGTGGCTCGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCCGCTGCCCGGGGCGCCCGAGGTGATAATCGTTTCATCGCGAACGGCAAGAAGCTGTTCTTCGTGACGAACAACTCGACGGGCATCACCAAGGAGCTGGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGCGGACACTGTCGCCCCCTTTGTGCCCGATCCGGACGTCAGTACCGTGATCGTTGGGTTCGATGAGCACTTTAGCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTGAACAATCCGGACGTTATATTCATTGGCACGAACACGGATGAGCGGTTCCCGATGCCGGACCGGGTTATACCCGGCACGGCGAGTATCGTGCAGGCGATGGTGACTTGCTCCGAGCGGGAACCGATCGTGATGGGCAAACCGAACCCACACATCTGCGAGATCATACGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8426#0 GCAAGAATTCCGCACGATGGTCGACGACGACGGGTCAGCCAAGCCCGGACGCACTAAACA 60 consensus_8426#1 ----------------CTGGGTGACT-TTACGGGTAG--CAAGCC-GGACGCACTAAACA 40 *** *** ****** ****** ************** consensus_8426#0 ATCGTTTTCTGTGTGTTTTATGTCCTTTTTAACCCGATCCTTCCATCGGCTGTCCAGAAT 120 consensus_8426#1 ATCGTTTTCTGTGTGTTTTATGTCCTTTTTAACCCGATCCTTCCATCGGCTGTCCAGAAT 100 ************************************************************ consensus_8426#0 GTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCGGCCGAGATCAAGCAGTGGCT 180 consensus_8426#1 GTCGAAATACAGTGGCCAAAACCTTGGCTCCCTTTCGCCGGCCGAGATCAAGCAGTGGCT 160 ************************************************************ consensus_8426#0 CGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCC 240 consensus_8426#1 CGATTCGTTCGACACGGTGCTAACGGACTGCGACGGGGTGATCTGGGTGGACAACAACCC 220 ************************************************************ consensus_8426#0 GCTGCCCGGGGCGCCCGAGGTGATAAATCGTTTCATCGCGAACGGCAAGAAGCTGTTCTT 300 consensus_8426#1 GCTGCCCGGGGCGCCCGAGGTGATAA-TCGTTTCATCGCGAACGGCAAGAAGCTGTTCTT 279 ************************** ********************************* consensus_8426#0 CGTGACGAACAACTCGACGAAAACGCGCCCGGAATTTGTGGAGAAAGCGGTCAAGCTTGG 360 consensus_8426#1 CGTGACGAACAACTCGACG----------------------------------------- 298 ******************* consensus_8426#0 CTTTAACGTGACTATCGACAACATCATATCGACTGCGTACCTGGCGGCACAGTACCTGAA 420 consensus_8426#1 ------------------------------------------------------------ consensus_8426#0 GAGTGTGGGCTTCTCCAAGACCGTGTACACGATCGGTTCGACGGGCATCACCAAGGAGCT 480 consensus_8426#1 -------------------------------------------GGCATCACCAAGGAGCT 315 ***************** consensus_8426#0 GGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGC 540 consensus_8426#1 GGACGCCGTTGGCATACGGCACATCGGCATCGGGCCGGACACGATCCAGGGCAGTCTGGC 375 ************************************************************ consensus_8426#0 GGACACTGTCGCCAGCTTTGTGCCCGATCCGGACGTCAGTGCCGTGATCGTTGGGTTCGA 600 consensus_8426#1 GGACACTGTCGCCCCCTTTGTGCCCGATCCGGACGTCAGTACCGTGATCGTTGGGTTCGA 435 ************* ************************* ******************* consensus_8426#0 TGAACACTTTAGCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTGAACAATCCGGACGT 660 consensus_8426#1 TGAGCACTTTAGCTTCGTCAAGATGATGAAAGCGGCCTCGTATCTGAACAATCCGGACGT 495 *** ******************************************************** consensus_8426#0 TATATTCATTGGCACGAACACGGATGAGCGGTTCCCGATGCCGGACCGGGTTATACCCGG 720 consensus_8426#1 TATATTCATTGGCACGAACACGGATGAGCGGTTCCCGATGCCGGACCGGGTTATACCCGG 555 ************************************************************ consensus_8426#0 CACGGGCAGTATCGTGCAGGCGATGGTGACCTGCTCCGAGCGGGAACCGATCGTGATGGG 780 consensus_8426#1 CACGGCGAGTATCGTGCAGGCGATGGTGACTTGCTCCGAGCGGGAACCGATCGTGATGGG 615 ***** *********************** ***************************** consensus_8426#0 CAAACCGAACCCACACATCTGCGAGATTATCCGCCGGGAGTACGATGTGGATCCGGCCCG 840 consensus_8426#1 CAAACCGAACCCACACATCTGCGAGATCATACGCC------------------------- 650 *************************** ** **** consensus_8426#0 TACGCTCATGATTGGCGATCGGTGCAATACGGACATTTTGCTGGGGAAGAATTGTGACTT 900 consensus_8426#1 ------------------------------------------------------------ consensus_8426#0 CCAGACGCTGCTGGTCGAAACGGGTATACACAAGGCGGAGGATATAGCAAAGTACGGACA 960 consensus_8426#1 ------------------------------------------------------------ consensus_8426#0 GTCGGAGGATCCGGCGGTGAGGGAACTGGTGCCGGATGTGTATCTACCTAAGCTGGGTGA 1020 consensus_8426#1 ------------------------------------------------------------ consensus_8426#0 CTAACTGCCGTATCTATGATGAGAGGGGGATGGCTGAGAGGTGCTTGTAAATGCTGTAAG 1080 consensus_8426#1 ------------------------------------------------------------ consensus_8426#0 ATTGTTTCAGCATGAGATGGTGCGAAAGTGTAACCGTTGTTTTAAACAATTGGTTTGTGA 1140 consensus_8426#1 ------------------------------------------------------------ consensus_8426#0 GAGTGTTGAAAAAAATACCTCAATAAATGTGCGCTTAAACAAAATAGGTAACAATAA 1197 consensus_8426#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||