These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1333 fasta sequence [ATGCNCAGCAGAATCCCGAGGTTAACAGAGG-CAATTGAACGTCTCGCCTTTTCGTATC-NT-TTTTTCGGGGACCGCAACGAAACTAAACTAATTAAAACATAGGAAATTGTTGTTAGCGCGTTGTTCT-TGTATCAAACACACACAGAGTCGCATCACAGTCGCAGCATGAGGATGGTGCGATCCTT-CGT-CCGGTCACACTTTAAGCTGCTGGCGGCGGTACTGCTGGCCGGTCTGGCCGTGA-GTATGGTCG-AGGCC-GAGAAGGAAATACCACTGA-CCAAGTTCAGCCAAGATGTTGGCAATTACGGTGCAACGATGACGTTCCTGTACTGTTATTCC-TGCGG-GTATCGCAAAGCGTTCGACGACTACCACAACCTCATCCTGG-AGA-A-GTATCCGG-AAA-TTACGATACGGGGCA-GCAACTACG-ATCCGTCCGGCGTGAACA-TGCTGCTGTCGAA-GGTGCTGCTGGTGACGAAGCTGCTGCTGATCGCCGCCCTGATGTCGAACTACG-ACATCGGGCGCTACAT-CGGCAACCCGTTTGCCGGCTGGTGG-CAATGGTGCTTCAACAACAAGCTGTACGCCTCGATGATGATCTTCTTCCTCGGCAACACGCTGGAAGCGCAGCTAATATCATCCGGTGCGTTCGAGATAACGCTGAACGATGTGCCGGTGTGGTCGAAGCTGGAGACGGGCCGG-TTTCCTGCGCCACA-GGAGATGTTCC-AAATCATCGACAATCA-CCTACA-GTTTGCCAACAAGATCGAGCCAAATCCGGATTTCGTGAAATAAGCGGCTCGTTGCCAGCAAGGCCAGTCATCCTACACTACTCTCGGCAGTGGTTCACTTATTATTATTGTTTGTTAGTGTTTTCTTGTCAGTTGCCTTACACCGCGGTGTTCCACAATTGTTTCCAAGTATCGAACAAGGATTATTATTTGCTATAAAGCTGGATGAAGGGTAAATGTATAATTGGAAAAGGATTCAGTTTTAATTTTCTTCGTTTTCCCCGTCGTACATCATTGAACATTTGCAGCACAGGG-ATATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAATTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTAAACAAAATATATTCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTTTGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAACGT-GGGCCGGCAAGTGCAT-AGGAGCAGGTGTGTTTTCGTATCCGTGGAAGAATTGAGGGGACTAAACTAAAACCAAATAAACCCACAAAAAA] [+] EMBL AL692329 [ATGCNCAGCAGAATCCCGAGGTTAACAGAGG CAATTGAACGTCTCGCCTTTTCGTATCTNTATTTTTCGGGGACCGCAACGAAACTAAACTAATTAAAACATAGGAAATTGTTGTTAGCGCGTTGTTCTATGTATCAAACACACACAGAGTCGCATCACAGTCGCAGCATGAGGATGGTGCGATCCTTACGTACCGGTCACACTTTAAGCTGCTGGCGGCGGTACTGCTGGCCGGTCTGGCCGTGANGTATGGTCGCAGGCCTGAGAAGGAAATACCACTGAGCCAAGTTCAGCCAAGATGTNGGCAATTACGGTGCAACGATGACGTTCCTGTACTGTTATTCCTTACGGCGTATCGCAAAGCGTTCGACGACTACCA AACCTCATCCTGGCAGACACGTATCCGGCAAACTTACGATACGGGGCACGCAACTACGCATCCGTCCGGCGTGAACACTGCTGCTGTCGAACGGTGCTGCTGGTGACGAAGCTGCTGCTGATCGACG CCTGATGTCGAACTACGCACATCGGGCGCTACATACGGCAACCCGTTTGCCGGCTGGTGGCCAATGG ] [+] EMBL BX619579 [ CAGAGGCCAATTGAAGTTCTCGCTTTTTCGTATC GT TTTTTCGGGGACCGCAACGAAACTAAACTAATTAAAACATAGGAAATTGTTGTTAGCGCGTTGTTCT TATATCAAACACACACAGAGCCGCATCACAGTCGCAGCATGAGGATGGTGCGATCCTT CGT CCGGTCACACTTTAAGCTGCTGGCGGCGGTACTGCTGGCCGGTCTGGCCGTGA GTATGGTCG AGGCC GAGAAGGAAATACCACTGA CCAAGTTCAGCCAAGATGTTGGCAATTACGGTGCAACGATGACGTTCCTGTACTGTTATTCC TGCGG GTATCGCAAAGCGTTCGACGACTACCACAACCTCATCCTGG AGA A GTATCCGG AAA TTACGATACGGGGCA GCAACTACG ATCCGTCCGGCGTGAACA TGCTGCTGTCGAA GGTGCTGCTGGTGACGAAGCTGCTGCTGATCGCCGCCCTGATGTCGANCTACG ACATCGGGCGCTACAT CGGCAACCCGTTTGCCGGCTGGTGG CAATGGTGCTTCAACNACAAGCTGTACGCCTCGATGATGATCTNCTNCCTCGGCAACACGCTGGAAGCGCAGCTATTATCATCCGGTGCGTTCGAGATAACGCTGAACGATGTGCNNGTGTGGTCGAAG ] [+] EMBL BX627586 [ AGGAAATTGTTGTTAGCGCGTTGTTCT TGTATCAAACACACACAGAGTCGCATCACAGTCGCAGCATGAGGATGGTGCGATCCTT CGT CCGGTCACACTTTAAGCTGCTGGCGGCGGTACTGCTGGCCGGTCTGGCCGTGA GTATGGTCG AGGCC GAGAAGGAAATACCACTGA CCAAGTTCAGCCAAGATGTTGGCAATTACGGTGCAACGATGACGTTCCTGTACTGTTATTCC TGCGG GTATCGCAAAGCGTTCGACGACTACCACAACCTCATCCTGG AGA A GTATCCGG AAA TTACGATACGGGGCA GCAACTACG ATCCGTCCGGCGTGAACA TGCTGCTGTCGAA GGTGCTGCTGGTGACGAAGCTGCTGCTGATCGCCGCCCTGATGTCGAACTACG ACATCGGGCGCTACAT CGGCAACCCGTTTGCCGGCTGGTGG CAATGGTGCTTCAACAACAAGCTGTACGCCTCGATGATGATCTTCTTCCTCGGCAACACGCTGGAAGCGCAGCTAATATCATCCGGTGCGTTCGAGATAACGCTGAACGATGTGCCGGTGTGGTCGAAGCTGGAGACGGGCCGGTTTTCCTGCGCCACAGGGAGATGTTCCAAAATCATCGACAATCACCCTACAGGTTTGCCAACAAGATCGAGCCAAATCCGGATTTCGTGAAA ] [+] EMBL BX613136 [ CTGGTGACGAAGCTGCTGCTGATCGCCGCCCTGATGTCGAACTACG ACATCGGGCGCTACAT CGGCAACCCGTTTGCCGGCTGGTGG CAATGGTGCTTCAACAACAAGCTGTACGCCTCGATGATGATCTTCTTCCTCGGCAACACGCTGGAAGCGCAGCTAATATCATCCGGTGCGTTCGAGATAACGCTGAACGATGTGCCGGTGTGGTCGAAGCTGGAGACGGGCCGG TTTCCTGCGCCACA GGAGATGTTCC AAATCATCGACAATCA CCTACA GTTTGCCAACAAGATCGAGCCAAATCCGGATTTCGTGAAATAAGCGGCTCGTTGCCAGCAAGGCCAGTCATCCTACACTACTCTCGGCAGTGGTTCACTTATTATTATTGTTTGTTAGTGTTTTCTTGTCAGTTGCCTTACACCGCGGTGTTCCACAATTGTTTCCAAGTATCGAACAAGGATTATTATTTGCTATAAAGCTGGATGAAGGGTAAATGTATAATTGGAAAAGGATTCAGTTTTAATTTTCTTCGTTTTCCCCGTCGTACATCATTGAACATTTGCAGCACAGGG ATATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAATTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTAAACAAAATATATTCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTTTGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAA ] [+] EMBL BM627376 [ ccgAGCTAATATCATCCGGTGCGTTCGAGATAACGCTGAACGATGTGCCGGTGTGGTCGAAGTTGGAGACGGGCCGG TTTCCTGCGCCACA GGAGATGTTCC AAATCATCGACAATCA TCTACA GTTTGCCAACAAGATCGAGCCAAATCCGGATTTCGTGAAATAAGCGACTCGTTGCCAGCAAGGGCAGTCATCCTACACTACTCTCGGCAGTGGTTCACTTATTATTATTGTTTGTTAGTGTTTTCTTGTCAGTTGCCTTACACCACGGTGTTCCACAATTGTTTCTAAGTATCGAACAACGATTATTATTTGCTATTAAGCAGGATGAAGGGTAAATGTACAATTGGAAAAGGATTCAGTTTTAATTTTCTTTGTTTTCCCCATCGTACATCATTGAACATTTGCAGCACAGGGTGTATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAATTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTCAACAAAATATATTCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTTTGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAACGTGGGGCCGGCAAGTGCATAAGGAGCAGGTGTGTTTTCGTATCCGTGGAAG ] [-] EMBL AGA280273 [ AATGTATAATTGGAAAAGGATTCAGTTTTAATTTTCTTCGTTTTCCCAGTCGAACATCATTGAACATTTGCAGCACAGGG ATATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAATTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTAAACAAAATATATTCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTTTGAAGGCGTTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAACGT GGGCCGGCAAGTGCAT AGGAGCAGGTGTGTTTTCGTATCCGTGGAAGAATTGAGGGGACTAAACTAAAACCAAATAAACCCACAAAAAA] [-] EMBL AGA284878 [ TTTT TTTTTTTCGTTTTCCCCGTCGTACATCATTGAACATTTGCAGCACAGGG ATATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAATTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTAAACAAAATATATTCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTTTGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAAC ] [+] EMBL AGA283589 [ tTTTTTTTCGTTTTCCCCGTCGTACATCATTGAACATTTGCAGCACAGGG ATATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAATTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTAAACAAAATATATTCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTTTGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAACGT GGGCCGGCctc ] [+] EMBL BM606565 [ ccgAATATATTCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTTTGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAACGT GGGCCGGCAAGTGCAT AGGAGCAGGTGTGTTTTCGTATCCGTGGAAGAATTGAATAAAATAAACTAAAACCAAATAAACCCAC ] consensusID : consensus_8468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [CCGCCCACGCGTCCGATCGAGCCAAATCCGGATTTCGTGAAATAAGCGACTCGTTGCCAGCAAGGGCAGTCATCCTACACTACTCTCGGCAGTGGTTCACTTATTATTATTGTTTGTTAGTGTTTTCTTGTCAGTTGCCTTACACCACGGTGTTCCACAATTGTTTCTAAGTATCGAACAACGATTATTATTTGCTATTAAGCAGGATGAAGGGTAAATGTACAATTGGAAAAGGATTCAGTTTTAATTTTCTTTGTTTTCCCCATCGTACATCATTGAACATTTGCAGCACAGGGTGTATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAATTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTCAACAAAATATATTCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTTTGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAACGTGGGCCGGCAAGTGCATAGGAGCAGGTGTGTTTTCGTATCCGTGGAAGAATTGAATAAAATAAACT] [+] EMBL BM598912 [CCGCCCACGCGTCCGATCGAGCCAAATCCGGATTTCGTGAAATAAGCGACTCGTTGCCAGCAAGGGCAGTCATCCTACACTACTCTCGGCAGTGGTTCACTTATTATTATTGTTTGTTAGTGTTTTCTTGTCAGTTGCCTTACACCACGGTGTTCCACAATTGTTTCTAAGTATCGAACAACGATTATTATTTGCTATTAAGCAGGATGAAGGGTAAATGTACAATTGGAAAAGGATTCAGTTTTAATTTTCTTTGTTTTCCCCATCGTACATCATTGAACATTTGCAGCACAGGGTGTATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAATTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTCAACAAAATATATTCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTTTGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAACGTGGGCCGGCAAGTGCATAGGAGCAGGTGTGTTTTCGTATCCGTGGAAGAATTGAATAAAATAAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8468#0 ATGCNCAGCAGAATCCCGAGGTTAACAGAGGCAATTGAACGTCTCGCCTTTTCGTATCNT 60 consensus_8468#1 ------------------------------------------------------------ consensus_8468#0 TTTTTCGGGGACCGCAACGAAACTAAACTAATTAAAACATAGGAAATTGTTGTTAGCGCG 120 consensus_8468#1 ------------------------------------------------------------ consensus_8468#0 TTGTTCTTGTATCAAACACACACAGAGTCGCATCACAGTCGCAGCATGAGGATGGTGCGA 180 consensus_8468#1 ------------------------------------------------------------ consensus_8468#0 TCCTTCGTCCGGTCACACTTTAAGCTGCTGGCGGCGGTACTGCTGGCCGGTCTGGCCGTG 240 consensus_8468#1 ------------------------------------------------------------ consensus_8468#0 AGTATGGTCGAGGCCGAGAAGGAAATACCACTGACCAAGTTCAGCCAAGATGTTGGCAAT 300 consensus_8468#1 ------------------------------------------------------------ consensus_8468#0 TACGGTGCAACGATGACGTTCCTGTACTGTTATTCCTGCGGGTATCGCAAAGCGTTCGAC 360 consensus_8468#1 ------------------------------------------------------------ consensus_8468#0 GACTACCACAACCTCATCCTGGAGAAGTATCCGGAAATTACGATACGGGGCAGCAACTAC 420 consensus_8468#1 ------------------------------------------------------------ consensus_8468#0 GATCCGTCCGGCGTGAACATGCTGCTGTCGAAGGTGCTGCTGGTGACGAAGCTGCTGCTG 480 consensus_8468#1 ------------------------------------------------------------ consensus_8468#0 ATCGCCGCCCTGATGTCGAACTACGACATCGGGCGCTACATCGGCAACCCGTTTGCCGGC 540 consensus_8468#1 ------------------------------------------------------------ consensus_8468#0 TGGTGGCAATGGTGCTTCAACAACAAGCTGTACGCCTCGATGATGATCTTCTTCCTCGGC 600 consensus_8468#1 ------------------------------------------------------------ consensus_8468#0 AACACGCTGGAAGCGCAGCTAATATCATCCGGTGCGTTCGAGATAACGCTGAACGATGTG 660 consensus_8468#1 ------------------------------------------------------------ consensus_8468#0 CCGGTGTGGTCGAAGCTGGAGACGGGCCGGTTTCCTGCGCCACAGGAGATGTTCCAAATC 720 consensus_8468#1 ------------------------------------------------------------ consensus_8468#0 ATCGACAATCACCTACAGTTTGCCAACAAGATCGAGCCAAATCCGGATTTCGTGAAATAA 780 consensus_8468#1 ---------------CCGCCCACGCGTCCGATCGAGCCAAATCCGGATTTCGTGAAATAA 45 * * * ******************************* consensus_8468#0 GCGGCTCGTTGCCAGCAAGGCCAGTCATCCTACACTACTCTCGGCAGTGGTTCACTTATT 840 consensus_8468#1 GCGACTCGTTGCCAGCAAGGGCAGTCATCCTACACTACTCTCGGCAGTGGTTCACTTATT 105 *** **************** *************************************** consensus_8468#0 ATTATTGTTTGTTAGTGTTTTCTTGTCAGTTGCCTTACACCGCGGTGTTCCACAATTGTT 900 consensus_8468#1 ATTATTGTTTGTTAGTGTTTTCTTGTCAGTTGCCTTACACCACGGTGTTCCACAATTGTT 165 ***************************************** ****************** consensus_8468#0 TCCAAGTATCGAACAAGGATTATTATTTGCTATAAAGCTGGATGAAGGGTAAATGTATAA 960 consensus_8468#1 TCTAAGTATCGAACAACGATTATTATTTGCTATTAAGCAGGATGAAGGGTAAATGTACAA 225 ** ************* **************** **** ****************** ** consensus_8468#0 TTGGAAAAGGATTCAGTTTTAATTTTCTTCGTTTTCCCCGTCGTACATCATTGAACATTT 1020 consensus_8468#1 TTGGAAAAGGATTCAGTTTTAATTTTCTTTGTTTTCCCCATCGTACATCATTGAACATTT 285 ***************************** ********* ******************** consensus_8468#0 GCAGCACAGGG-ATATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAA 1079 consensus_8468#1 GCAGCACAGGGTGTATGTTTGAAATTTTTGTTTTATTTATTTCCCTGTTTTGCGTAAGAA 345 *********** *********************************************** consensus_8468#0 TTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTAAACAAAATATAT 1139 consensus_8468#1 TTTAAATACTCCACACGTTTCCCCTTACGAAATGCAGCAAAACGTCTCAACAAAATATAT 405 *********************************************** ************ consensus_8468#0 TCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTT 1199 consensus_8468#1 TCAACATGTTTTAATCCGCATGTGTTTTGGGCAGGCCGCTCGTGTCTAACGCTCCCCCTT 465 ************************************************************ consensus_8468#0 TGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAACGTGGGCCGGCAAGTGCA 1259 consensus_8468#1 TGAAGGCGCTAGTTTGTAAGGCAATCTGTACGGCGGAGGCAACGTGGGCCGGCAAGTGCA 525 ************************************************************ consensus_8468#0 TAGGAGCAGGTGTGTTTTCGTATCCGTGGAAGAATTGAGGGGACTAAACTAAAACCAAAT 1319 consensus_8468#1 TAGGAGCAGGTGTGTTTTCGTATCCGTGGAAGAATTGAATAAAATAAACT---------- 575 ************************************** * ****** consensus_8468#0 AAACCCACAAAAAA 1333 consensus_8468#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||